Wall clock time and date at job start Mon Mar 30 2020 01:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.05644 * 2 1 4 4 C 1.54265 * 110.03622 * 238.57884 * 2 1 3 5 5 C 1.54893 * 104.19570 * 264.33030 * 4 2 1 6 6 C 1.54886 * 102.74736 * 322.05096 * 5 4 2 7 7 C 1.53879 * 110.02994 * 121.41034 * 2 1 3 8 8 H 1.08995 * 110.03196 * 359.95398 * 7 2 1 9 9 C 1.53001 * 110.03401 * 238.56660 * 7 2 1 10 10 C 1.53000 * 109.46886 * 174.99985 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46852 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99910 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00389 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00447 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99742 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46758 * 89.99993 * 20 18 16 22 22 H 1.48494 * 109.46958 * 210.00189 * 20 18 16 23 23 H 1.48503 * 109.46885 * 330.00122 * 20 18 16 24 24 H 1.08999 * 109.47081 * 298.58930 * 1 2 3 25 25 H 1.09002 * 109.46691 * 58.58957 * 1 2 3 26 26 H 1.09000 * 109.46947 * 178.58657 * 1 2 3 27 27 H 1.08998 * 109.47095 * 181.41798 * 3 2 1 28 28 H 1.08996 * 109.46755 * 301.41162 * 3 2 1 29 29 H 1.09000 * 109.47272 * 61.41471 * 3 2 1 30 30 H 1.08999 * 110.48147 * 23.00208 * 4 2 1 31 31 H 1.08996 * 110.48946 * 145.51255 * 4 2 1 32 32 H 1.08999 * 110.75875 * 80.37213 * 5 4 2 33 33 H 1.08998 * 110.75145 * 203.55448 * 5 4 2 34 34 H 1.08999 * 110.48869 * 279.27171 * 6 5 4 35 35 H 1.09001 * 110.48672 * 156.62211 * 6 5 4 36 36 H 1.09001 * 109.46652 * 55.00330 * 9 7 2 37 37 H 1.08992 * 109.47514 * 295.00419 * 9 7 2 38 38 H 1.09002 * 109.47398 * 300.00496 * 10 9 7 39 39 H 1.09001 * 109.47194 * 60.00677 * 10 9 7 40 40 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 41 41 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 42 42 H 1.09000 * 109.47319 * 299.99842 * 15 14 12 43 43 H 1.08996 * 109.47236 * 60.00639 * 15 14 12 44 44 H 0.97003 * 119.99911 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3280 -2.1903 -0.7189 6 6 2.8874 -1.9407 0.7037 7 6 2.0570 -0.7535 1.2339 8 1 1.2228 -1.1183 1.8330 9 6 2.9408 0.1705 2.0742 10 6 3.3558 -0.5502 3.3585 11 7 4.2016 0.3347 4.1634 12 6 4.6886 -0.0908 5.3459 13 8 4.4265 -1.2092 5.7444 14 7 5.4663 0.7235 6.0867 15 6 5.9952 0.2612 7.3723 16 6 6.8276 1.3524 7.9947 17 1 6.9500 2.2962 7.4839 18 6 7.4329 1.1462 9.2161 19 7 8.1588 2.0987 9.7595 20 14 7.2206 -0.4858 10.0999 21 1 8.3013 -1.4168 9.6865 22 1 7.2901 -0.2669 11.5670 23 1 5.9018 -1.0711 9.7487 24 1 -0.3633 0.4918 0.9024 25 1 -0.3633 0.5356 -0.8771 26 1 -0.3633 -1.0274 -0.0253 27 1 3.1443 1.4262 -0.0254 28 1 1.6762 1.9621 -0.8770 29 1 1.7174 1.9472 0.9024 30 1 1.3062 -0.7697 -2.0253 31 1 2.9799 -0.2987 -1.5980 32 1 1.4031 -2.7652 -0.6750 33 1 3.0651 -2.6943 -1.3439 34 1 3.9439 -1.6766 0.6573 35 1 2.7401 -2.8196 1.3312 36 1 2.3851 1.0733 2.3275 37 1 3.8304 0.4392 1.5047 38 1 2.4662 -0.8190 3.9280 39 1 3.9116 -1.4530 3.1052 40 1 4.4111 1.2268 3.8454 41 1 5.6751 1.6158 5.7689 42 1 5.1681 0.0109 8.0366 43 1 6.6143 -0.6219 7.2140 44 1 8.5843 1.9536 10.6191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875539968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:39 Heat of formation + Delta-G solvation = -64.244604 kcal Electronic energy + Delta-G solvation = -20504.606170 eV Core-core repulsion = 17455.523819 eV Total energy + Delta-G solvation = -3049.082351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01600 -39.11292 -35.17773 -34.08283 -32.50083 -32.39435 -31.58443 -28.08553 -27.75522 -26.49246 -24.63889 -22.67186 -21.82744 -20.63483 -20.25967 -18.55616 -17.97640 -16.35077 -16.07994 -15.65886 -15.47691 -15.10390 -14.53645 -14.23489 -13.97503 -13.71978 -13.52389 -13.33474 -13.20732 -13.02546 -12.50084 -12.31331 -12.14442 -11.84940 -11.57244 -11.50078 -11.21318 -10.95908 -10.87683 -10.80974 -10.72882 -10.69636 -10.55058 -10.45772 -9.93162 -9.53598 -9.41563 -8.79555 -8.70376 -7.95275 -6.17899 -4.19513 3.29246 3.32932 3.39532 3.46575 3.87787 4.22715 4.27805 4.37329 4.41027 4.89924 4.93551 4.98218 5.01786 5.06516 5.13613 5.17861 5.22192 5.27031 5.40196 5.41586 5.50397 5.52953 5.62044 5.69037 5.70377 5.73170 5.79839 5.88706 5.97990 6.04890 6.07860 6.13029 6.17519 6.27968 6.79257 6.86299 7.16139 7.29735 7.46023 7.63611 8.32471 8.73834 8.86432 9.27297 9.44529 10.94124 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042798 B = 0.002957 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.078434 B = 9466.601815 C = 9771.535934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.079 4.079 8 H 0.076 0.924 9 C -0.126 4.126 10 C 0.139 3.861 11 N -0.756 5.756 12 C 0.693 3.307 13 O -0.605 6.605 14 N -0.724 5.724 15 C 0.238 3.762 16 C -0.541 4.541 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.894 5.894 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.392 0.608 41 H 0.392 0.608 42 H 0.023 0.977 43 H 0.018 0.982 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 -3.292 -23.073 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.160 4.160 7 C -0.098 4.098 8 H 0.094 0.906 9 C -0.163 4.163 10 C 0.015 3.985 11 N -0.413 5.413 12 C 0.393 3.607 13 O -0.485 6.485 14 N -0.376 5.376 15 C 0.115 3.885 16 C -0.579 4.579 17 H 0.097 0.903 18 C -0.127 4.127 19 N -0.532 5.532 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.184 1.184 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.225 0.775 41 H 0.225 0.775 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.975 -4.289 -22.487 26.821 hybrid contribution 0.213 0.110 0.282 0.370 sum -13.762 -4.178 -22.205 26.456 Atomic orbital electron populations 1.21908 0.94444 1.01622 1.01592 1.21182 0.95355 0.95310 0.94676 1.22043 1.01144 0.95312 1.01554 1.22486 1.00693 0.95366 0.96721 1.22473 1.00691 0.96646 0.96471 1.22488 0.99640 0.97882 0.95952 1.21783 0.97799 0.94932 0.95320 0.90581 1.22057 1.00019 0.98973 0.95273 1.21129 0.94047 0.92998 0.90364 1.45137 1.56217 1.18642 1.21319 1.16145 0.79464 0.84840 0.80251 1.90857 1.64966 1.20029 1.72642 1.45391 1.52311 1.17135 1.22795 1.19345 0.93813 0.95809 0.79492 1.21106 1.30881 1.00813 1.05135 0.90325 1.24783 0.94173 0.96969 0.96738 1.69882 1.32264 1.32947 1.18077 0.86808 0.79923 0.84022 0.78896 1.19858 1.20960 1.18416 0.92606 0.92872 0.92658 0.92204 0.93155 0.92192 0.91913 0.91589 0.91706 0.91775 0.91304 0.91493 0.90935 0.91073 0.92275 0.92046 0.77501 0.77517 0.95959 0.96415 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.15 37.16 0.30 -0.63 16 2 C -0.07 -0.46 0.94 -153.39 -0.14 -0.61 16 3 C -0.14 -0.99 7.20 37.16 0.27 -0.72 16 4 C -0.12 -0.79 5.90 -25.07 -0.15 -0.94 16 5 C -0.13 -0.90 6.91 -24.74 -0.17 -1.07 16 6 C -0.12 -1.01 5.53 -25.07 -0.14 -1.15 16 7 C -0.08 -0.64 2.58 -89.49 -0.23 -0.88 16 8 H 0.08 0.65 7.67 -51.93 -0.40 0.26 16 9 C -0.13 -1.11 3.50 -26.73 -0.09 -1.20 16 10 C 0.14 1.76 5.53 -4.04 -0.02 1.74 16 11 N -0.76 -11.15 5.56 -65.22 -0.36 -11.51 16 12 C 0.69 14.17 8.57 -86.91 -0.74 13.43 16 13 O -0.61 -14.86 16.34 5.29 0.09 -14.77 16 14 N -0.72 -15.37 5.55 -66.41 -0.37 -15.73 16 15 C 0.24 6.07 4.50 -5.19 -0.02 6.05 16 16 C -0.54 -15.15 9.83 -34.44 -0.34 -15.49 16 17 H 0.08 2.28 7.84 -52.48 -0.41 1.87 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 20 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 6.62 -51.93 -0.34 0.07 16 30 H 0.06 0.40 7.84 -51.93 -0.41 -0.01 16 31 H 0.07 0.46 7.83 -51.93 -0.41 0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.60 7.76 -51.93 -0.40 0.20 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.61 6.42 -51.93 -0.33 0.27 16 37 H 0.07 0.60 6.91 -51.93 -0.36 0.25 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.84 7.51 -51.93 -0.39 0.45 16 40 H 0.39 4.60 8.49 -40.82 -0.35 4.25 16 41 H 0.39 7.26 8.33 -40.82 -0.34 6.92 16 42 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 43 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 342.53 15.07 5.16 5.16 Total: -1.00 -32.83 342.53 -8.77 -41.60 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.81 Total: 3.53 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.58 Total: 0.65 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.04 Total: -53.33 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.09 Total: -14.77 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.83 -8.77 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.641 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds