Wall clock time and date at job start Mon Mar 30 2020 01:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.05644 * 2 1 4 4 C 1.54265 * 110.03622 * 238.57884 * 2 1 3 5 5 C 1.54893 * 104.19570 * 264.33030 * 4 2 1 6 6 C 1.54886 * 102.74736 * 322.05096 * 5 4 2 7 7 C 1.53879 * 110.02994 * 121.41034 * 2 1 3 8 8 H 1.08995 * 110.03196 * 359.95398 * 7 2 1 9 9 C 1.53001 * 110.03401 * 238.56660 * 7 2 1 10 10 C 1.53000 * 109.46886 * 174.99985 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46852 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99910 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00389 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00447 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99742 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46758 * 89.99993 * 20 18 16 22 22 H 1.48494 * 109.46958 * 210.00189 * 20 18 16 23 23 H 1.48503 * 109.46885 * 330.00122 * 20 18 16 24 24 H 1.08999 * 109.47081 * 298.58930 * 1 2 3 25 25 H 1.09002 * 109.46691 * 58.58957 * 1 2 3 26 26 H 1.09000 * 109.46947 * 178.58657 * 1 2 3 27 27 H 1.08998 * 109.47095 * 181.41798 * 3 2 1 28 28 H 1.08996 * 109.46755 * 301.41162 * 3 2 1 29 29 H 1.09000 * 109.47272 * 61.41471 * 3 2 1 30 30 H 1.08999 * 110.48147 * 23.00208 * 4 2 1 31 31 H 1.08996 * 110.48946 * 145.51255 * 4 2 1 32 32 H 1.08999 * 110.75875 * 80.37213 * 5 4 2 33 33 H 1.08998 * 110.75145 * 203.55448 * 5 4 2 34 34 H 1.08999 * 110.48869 * 279.27171 * 6 5 4 35 35 H 1.09001 * 110.48672 * 156.62211 * 6 5 4 36 36 H 1.09001 * 109.46652 * 55.00330 * 9 7 2 37 37 H 1.08992 * 109.47514 * 295.00419 * 9 7 2 38 38 H 1.09002 * 109.47398 * 300.00496 * 10 9 7 39 39 H 1.09001 * 109.47194 * 60.00677 * 10 9 7 40 40 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 41 41 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 42 42 H 1.09000 * 109.47319 * 299.99842 * 15 14 12 43 43 H 1.08996 * 109.47236 * 60.00639 * 15 14 12 44 44 H 0.97003 * 119.99911 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3280 -2.1903 -0.7189 6 6 2.8874 -1.9407 0.7037 7 6 2.0570 -0.7535 1.2339 8 1 1.2228 -1.1183 1.8330 9 6 2.9408 0.1705 2.0742 10 6 3.3558 -0.5502 3.3585 11 7 4.2016 0.3347 4.1634 12 6 4.6886 -0.0908 5.3459 13 8 4.4265 -1.2092 5.7444 14 7 5.4663 0.7235 6.0867 15 6 5.9952 0.2612 7.3723 16 6 6.8276 1.3524 7.9947 17 1 6.9500 2.2962 7.4839 18 6 7.4329 1.1462 9.2161 19 7 8.1588 2.0987 9.7595 20 14 7.2206 -0.4858 10.0999 21 1 8.3013 -1.4168 9.6865 22 1 7.2901 -0.2669 11.5670 23 1 5.9018 -1.0711 9.7487 24 1 -0.3633 0.4918 0.9024 25 1 -0.3633 0.5356 -0.8771 26 1 -0.3633 -1.0274 -0.0253 27 1 3.1443 1.4262 -0.0254 28 1 1.6762 1.9621 -0.8770 29 1 1.7174 1.9472 0.9024 30 1 1.3062 -0.7697 -2.0253 31 1 2.9799 -0.2987 -1.5980 32 1 1.4031 -2.7652 -0.6750 33 1 3.0651 -2.6943 -1.3439 34 1 3.9439 -1.6766 0.6573 35 1 2.7401 -2.8196 1.3312 36 1 2.3851 1.0733 2.3275 37 1 3.8304 0.4392 1.5047 38 1 2.4662 -0.8190 3.9280 39 1 3.9116 -1.4530 3.1052 40 1 4.4111 1.2268 3.8454 41 1 5.6751 1.6158 5.7689 42 1 5.1681 0.0109 8.0366 43 1 6.6143 -0.6219 7.2140 44 1 8.5843 1.9536 10.6191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875539968.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:39 Heat of formation + Delta-G solvation = -86.116416 kcal Electronic energy + Delta-G solvation = -20505.554603 eV Core-core repulsion = 17455.523819 eV Total energy + Delta-G solvation = -3050.030784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01840 -40.36748 -36.55637 -35.87887 -34.42250 -33.07017 -32.67823 -29.89169 -28.29516 -27.53950 -25.35938 -24.13378 -23.14518 -21.92347 -21.30941 -19.93479 -18.97461 -18.27550 -17.44584 -16.80644 -16.40049 -16.31148 -15.91477 -15.60627 -15.13580 -14.99212 -14.60113 -14.38393 -14.25279 -14.16781 -13.88034 -13.78000 -13.03712 -13.01253 -12.70422 -12.53334 -12.29823 -12.24263 -11.92139 -11.82252 -11.65750 -11.58160 -11.39013 -11.34851 -11.22852 -11.11914 -11.10191 -10.91139 -10.29330 -9.63157 -8.39255 -6.45997 1.34152 1.35888 1.49644 1.90008 2.22135 2.29670 2.96375 3.48771 3.61310 3.67770 3.82345 4.11823 4.23251 4.37998 4.47840 4.50230 4.53049 4.64233 4.71631 4.74257 4.79614 4.82106 4.89401 4.99394 5.04637 5.06029 5.10504 5.16914 5.18578 5.22317 5.25989 5.29679 5.32635 5.49077 5.54253 5.54758 5.55399 5.60823 5.66305 6.00108 6.30584 6.56144 7.15301 7.28760 7.68335 8.75478 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042798 B = 0.002957 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.078434 B = 9466.601815 C = 9771.535934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.144 4.144 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.078 4.078 8 H 0.071 0.929 9 C -0.112 4.112 10 C 0.139 3.861 11 N -0.733 5.733 12 C 0.691 3.309 13 O -0.647 6.647 14 N -0.722 5.722 15 C 0.251 3.749 16 C -0.545 4.545 17 H 0.060 0.940 18 C 0.027 3.973 19 N -0.931 5.931 20 Si 0.938 3.062 21 H -0.265 1.265 22 H -0.272 1.272 23 H -0.261 1.261 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.410 0.590 41 H 0.405 0.595 42 H 0.009 0.991 43 H 0.008 0.992 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.639 -3.427 -24.409 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.201 4.201 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.163 4.163 7 C -0.097 4.097 8 H 0.089 0.911 9 C -0.149 4.149 10 C 0.015 3.985 11 N -0.390 5.390 12 C 0.391 3.609 13 O -0.530 6.530 14 N -0.376 5.376 15 C 0.127 3.873 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.570 5.570 20 Si 0.761 3.239 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.186 1.186 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.246 0.754 41 H 0.240 0.760 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.766 -4.377 -23.884 28.419 hybrid contribution 0.430 0.196 0.619 0.779 sum -14.335 -4.180 -23.265 27.645 Atomic orbital electron populations 1.21902 0.94094 1.01684 1.01826 1.21163 0.95611 0.95420 0.94086 1.22045 1.01168 0.95000 1.01875 1.22480 1.00965 0.94896 0.96722 1.22466 1.00821 0.97095 0.95713 1.22494 0.99464 0.97637 0.96669 1.21775 0.97429 0.94870 0.95663 0.91100 1.21993 1.00666 0.98977 0.93309 1.21291 0.92913 0.92916 0.91425 1.44983 1.54970 1.19677 1.19362 1.16292 0.79204 0.84064 0.81339 1.90827 1.66383 1.21864 1.73962 1.45110 1.52686 1.17968 1.21851 1.18941 0.92800 0.94575 0.81012 1.21275 1.31042 1.00729 1.05279 0.92224 1.25577 0.93883 1.00266 0.97617 1.69976 1.33297 1.34896 1.18838 0.85855 0.79832 0.79940 0.78250 1.18950 1.19701 1.18576 0.92843 0.92154 0.92746 0.92159 0.92580 0.92181 0.91189 0.91468 0.91509 0.91387 0.91754 0.92391 0.89825 0.90083 0.93377 0.93083 0.75350 0.75958 0.97274 0.97380 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.15 71.98 0.59 -1.01 16 2 C -0.06 -0.76 0.94 -51.46 -0.05 -0.81 16 3 C -0.14 -1.63 7.20 71.98 0.52 -1.11 16 4 C -0.11 -1.32 5.90 31.67 0.19 -1.13 16 5 C -0.12 -1.58 6.91 31.89 0.22 -1.36 16 6 C -0.13 -1.94 5.53 31.67 0.18 -1.76 16 7 C -0.08 -1.15 2.58 -10.06 -0.03 -1.18 16 8 H 0.07 1.14 7.67 -2.39 -0.02 1.12 16 9 C -0.11 -1.76 3.50 30.59 0.11 -1.65 16 10 C 0.14 3.35 5.53 86.38 0.48 3.83 16 11 N -0.73 -20.51 5.56 -478.52 -2.66 -23.17 16 12 C 0.69 27.75 8.57 179.05 1.53 29.28 16 13 O -0.65 -31.72 16.34 -4.00 -0.07 -31.78 16 14 N -0.72 -30.23 5.55 -482.28 -2.68 -32.91 16 15 C 0.25 12.76 4.50 85.63 0.38 13.15 16 16 C -0.55 -30.63 9.83 25.60 0.25 -30.38 16 17 H 0.06 3.50 7.84 -2.91 -0.02 3.47 16 18 C 0.03 1.54 5.47 84.65 0.46 2.00 16 19 N -0.93 -56.06 13.96 21.44 0.30 -55.76 16 20 Si 0.94 44.78 27.47 68.60 1.88 46.66 16 21 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.26 -12.48 6.54 99.48 0.65 -11.83 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.68 6.86 -2.39 -0.02 0.66 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.68 6.62 -2.39 -0.02 0.66 16 30 H 0.07 0.73 7.84 -2.39 -0.02 0.71 16 31 H 0.07 0.78 7.83 -2.39 -0.02 0.76 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 1.05 7.76 -2.39 -0.02 1.03 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.18 6.42 -2.39 -0.02 1.16 16 37 H 0.08 1.16 6.91 -2.39 -0.02 1.15 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.37 7.51 -2.39 -0.02 1.35 16 40 H 0.41 8.66 8.49 -92.71 -0.79 7.87 16 41 H 0.41 14.65 8.33 -92.71 -0.77 13.87 16 42 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 43 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -69.62 342.53 0.97 -68.65 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -0.64 Total: 20.46 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 4.83 Total: 7.86 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -5.04 Total: -111.84 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.07 Total: -31.78 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -69.62 0.97 -68.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539968.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.467 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds