Wall clock time and date at job start Mon Mar 30 2020 01:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47149 * 2 1 4 4 C 1.53006 * 109.47099 * 119.99359 * 2 1 3 5 5 C 1.53008 * 109.46814 * 60.00299 * 4 2 1 6 6 C 1.52998 * 109.47007 * 59.99839 * 5 4 2 7 7 C 1.52997 * 109.47291 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.47237 * 59.99821 * 6 5 4 9 9 C 1.34773 * 119.99969 * 179.72043 * 8 6 5 10 10 O 1.21586 * 120.00012 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99940 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00211 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47426 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99731 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00455 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99724 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00211 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47390 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47183 * 120.00029 * 17 15 13 20 20 H 1.48496 * 109.47130 * 240.00073 * 17 15 13 21 21 C 1.52998 * 109.47322 * 300.00199 * 6 5 4 22 22 C 1.52992 * 109.47451 * 59.99853 * 21 6 5 23 23 H 1.08995 * 109.47372 * 299.99870 * 1 2 3 24 24 H 1.09000 * 109.47257 * 60.00150 * 1 2 3 25 25 H 1.09002 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47268 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46918 * 300.00057 * 3 2 1 28 28 H 1.09005 * 109.47422 * 59.99701 * 3 2 1 29 29 H 1.08995 * 109.47637 * 300.00608 * 4 2 1 30 30 H 1.09002 * 109.47078 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46711 * 300.00066 * 5 4 2 32 32 H 1.09000 * 109.47136 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.47000 * 300.00701 * 7 6 5 34 34 H 1.09002 * 109.46917 * 59.99921 * 7 6 5 35 35 H 1.08995 * 109.47505 * 180.02562 * 7 6 5 36 36 H 0.97005 * 119.99811 * 0.02562 * 8 6 5 37 37 H 0.97004 * 120.00041 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47182 * 299.99924 * 12 11 9 39 39 H 1.09001 * 109.47115 * 59.99869 * 12 11 9 40 40 H 0.96993 * 120.00031 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.47120 * 180.02562 * 21 6 5 42 42 H 1.09002 * 109.46792 * 300.00022 * 21 6 5 43 43 H 1.09000 * 109.47344 * 180.02562 * 22 21 6 44 44 H 1.09002 * 109.46985 * 60.00287 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.5300 -2.1637 1.2494 6 6 2.0400 -2.8850 0.0002 7 6 1.5306 -4.3277 0.0005 8 7 3.5051 -2.8849 0.0002 9 6 4.1789 -3.4734 -1.0077 10 8 3.5710 -4.0040 -1.9172 11 7 5.5267 -3.4738 -1.0075 12 6 6.2592 -4.1131 -2.1033 13 6 7.7409 -3.9743 -1.8655 14 1 8.1008 -3.4615 -0.9857 15 6 8.6369 -4.5027 -2.7704 16 7 8.1986 -5.1275 -3.8415 17 14 10.4734 -4.3312 -2.4752 18 1 10.7042 -3.5925 -1.2078 19 1 11.0875 -5.6800 -2.3803 20 1 11.0884 -3.5855 -3.6024 21 6 1.5301 -2.1638 -1.2491 22 6 2.0400 -0.7213 -1.2491 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 -0.2074 2.1393 30 1 3.1300 -0.7207 1.2496 31 1 0.4400 -2.1637 1.2494 32 1 1.8936 -2.6776 2.1392 33 1 1.8942 -4.8412 0.8906 34 1 0.4406 -4.3281 0.0007 35 1 1.8943 -4.8416 -0.8891 36 1 3.9901 -2.4652 0.7279 37 1 6.0117 -3.0502 -0.2820 38 1 5.9957 -5.1697 -2.1489 39 1 5.9962 -3.6320 -3.0454 40 1 8.8289 -5.4989 -4.4783 41 1 1.8931 -2.6780 -2.1390 42 1 0.4401 -2.1638 -1.2491 43 1 1.6763 -0.2074 -2.1389 44 1 3.1300 -0.7213 -1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:44 Heat of formation + Delta-G solvation = -61.030144 kcal Electronic energy + Delta-G solvation = -21834.893437 eV Core-core repulsion = 18785.950475 eV Total energy + Delta-G solvation = -3048.942962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54002 -38.36861 -35.21481 -33.91739 -32.42865 -31.05217 -30.80752 -28.66597 -27.42577 -26.86144 -24.16181 -22.83736 -22.68606 -20.61109 -19.68898 -18.21660 -17.91524 -16.12304 -15.54342 -15.01560 -14.88417 -14.59689 -14.53644 -14.04198 -13.82534 -13.68381 -13.52481 -12.83564 -12.37066 -12.27027 -12.08567 -11.97126 -11.93670 -11.91462 -11.72052 -11.55553 -11.20848 -11.15123 -10.90043 -10.88254 -10.74698 -10.30073 -10.26813 -10.09272 -9.95097 -9.30955 -9.00168 -8.68237 -8.51844 -7.66839 -6.12192 -4.18167 3.25853 3.32400 3.35417 3.51072 4.07075 4.35816 4.57604 4.65907 4.71704 4.95021 5.13035 5.18673 5.24045 5.31157 5.33168 5.44653 5.51327 5.57369 5.64184 5.72354 5.74597 5.84594 5.87761 5.89981 5.96894 5.98719 6.10099 6.15842 6.18560 6.32385 6.39551 6.52760 6.65028 6.67994 7.14622 7.22638 7.59463 7.63015 7.64940 7.98183 8.12291 8.82568 9.05194 9.41774 9.57552 10.98145 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028253 B = 0.004266 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.802938 B = 6562.068560 C = 6960.616533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.107 4.107 5 C -0.122 4.122 6 C 0.201 3.799 7 C -0.165 4.165 8 N -0.747 5.747 9 C 0.696 3.304 10 O -0.597 6.597 11 N -0.733 5.733 12 C 0.268 3.732 13 C -0.540 4.540 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.131 4.131 22 C -0.103 4.103 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.387 0.613 37 H 0.384 0.616 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.264 0.736 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 10.164 11.302 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C -0.198 4.198 4 C -0.145 4.145 5 C -0.160 4.160 6 C 0.114 3.886 7 C -0.223 4.223 8 N -0.404 5.404 9 C 0.396 3.604 10 O -0.477 6.477 11 N -0.385 5.385 12 C 0.147 3.853 13 C -0.578 4.578 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.170 4.170 22 C -0.140 4.140 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.221 0.779 37 H 0.216 0.784 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.898 9.551 10.250 20.451 hybrid contribution 1.535 0.443 0.768 1.773 sum -13.363 9.993 11.017 19.996 Atomic orbital electron populations 1.21962 0.94989 1.01949 1.01159 1.20542 0.95402 0.94884 0.95679 1.21858 1.01100 0.95573 1.01283 1.21579 1.00716 0.95021 0.97143 1.21877 1.01459 0.95514 0.97133 1.19947 0.79210 0.94763 0.94678 1.22254 1.00018 0.96328 1.03689 1.45330 1.05980 1.63042 1.26054 1.16128 0.82459 0.79514 0.82329 1.90790 1.67815 1.51445 1.37624 1.45738 1.03566 1.60789 1.28389 1.18927 0.89498 0.92870 0.84002 1.21281 0.90575 1.37630 1.08333 0.92003 1.24941 0.99416 0.94842 0.94842 1.69991 1.34801 1.36298 1.11250 0.86380 0.84550 0.77873 0.78200 1.19701 1.20847 1.20842 1.22011 0.99812 0.95406 0.99736 1.21507 1.01126 0.95213 0.96180 0.93165 0.92961 0.91994 0.92665 0.92843 0.93033 0.92132 0.91873 0.90427 0.91636 0.93162 0.92755 0.89723 0.77909 0.78412 0.95886 0.95882 0.92584 0.89234 0.91887 0.92538 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.78 37.16 0.29 -0.98 16 2 C -0.07 -0.64 0.77 -154.51 -0.12 -0.76 16 3 C -0.14 -1.31 8.47 37.16 0.31 -0.99 16 4 C -0.11 -1.00 4.56 -26.72 -0.12 -1.12 16 5 C -0.12 -1.20 4.51 -26.73 -0.12 -1.32 16 6 C 0.20 2.63 0.66 -131.82 -0.09 2.54 16 7 C -0.16 -2.31 8.40 37.16 0.31 -1.99 16 8 N -0.75 -11.13 4.04 -52.42 -0.21 -11.34 16 9 C 0.70 14.10 7.98 -86.92 -0.69 13.41 16 10 O -0.60 -14.28 12.55 5.29 0.07 -14.22 16 11 N -0.73 -15.76 5.55 -66.42 -0.37 -16.13 16 12 C 0.27 7.24 5.43 -5.20 -0.03 7.21 16 13 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 14 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 17 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.13 -1.81 4.25 -26.74 -0.11 -1.93 16 22 C -0.10 -1.30 4.57 -26.74 -0.12 -1.42 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.62 6.86 -51.93 -0.36 0.26 16 31 H 0.08 0.69 6.43 -51.93 -0.33 0.36 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.50 6.14 -51.93 -0.32 1.18 16 36 H 0.39 4.86 7.33 -40.82 -0.30 4.56 16 37 H 0.38 7.17 8.34 -40.82 -0.34 6.83 16 38 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.09 1.59 6.18 -51.93 -0.32 1.27 16 42 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.95 7.60 -51.93 -0.39 0.56 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -31.23 332.13 -8.26 -39.48 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.56 Total: 7.65 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.91 Total: -0.84 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.16 Total: -53.11 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.07 Total: -14.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.23 -8.26 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.549 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds