Wall clock time and date at job start Mon Mar 30 2020 01:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47149 * 2 1 4 4 C 1.53006 * 109.47099 * 119.99359 * 2 1 3 5 5 C 1.53008 * 109.46814 * 60.00299 * 4 2 1 6 6 C 1.52998 * 109.47007 * 59.99839 * 5 4 2 7 7 C 1.52997 * 109.47291 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.47237 * 59.99821 * 6 5 4 9 9 C 1.34773 * 119.99969 * 179.72043 * 8 6 5 10 10 O 1.21586 * 120.00012 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99940 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00211 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47426 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99731 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00455 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99724 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00211 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47390 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47183 * 120.00029 * 17 15 13 20 20 H 1.48496 * 109.47130 * 240.00073 * 17 15 13 21 21 C 1.52998 * 109.47322 * 300.00199 * 6 5 4 22 22 C 1.52992 * 109.47451 * 59.99853 * 21 6 5 23 23 H 1.08995 * 109.47372 * 299.99870 * 1 2 3 24 24 H 1.09000 * 109.47257 * 60.00150 * 1 2 3 25 25 H 1.09002 * 109.46897 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47268 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46918 * 300.00057 * 3 2 1 28 28 H 1.09005 * 109.47422 * 59.99701 * 3 2 1 29 29 H 1.08995 * 109.47637 * 300.00608 * 4 2 1 30 30 H 1.09002 * 109.47078 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.46711 * 300.00066 * 5 4 2 32 32 H 1.09000 * 109.47136 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.47000 * 300.00701 * 7 6 5 34 34 H 1.09002 * 109.46917 * 59.99921 * 7 6 5 35 35 H 1.08995 * 109.47505 * 180.02562 * 7 6 5 36 36 H 0.97005 * 119.99811 * 0.02562 * 8 6 5 37 37 H 0.97004 * 120.00041 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47182 * 299.99924 * 12 11 9 39 39 H 1.09001 * 109.47115 * 59.99869 * 12 11 9 40 40 H 0.96993 * 120.00031 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.47120 * 180.02562 * 21 6 5 42 42 H 1.09002 * 109.46792 * 300.00022 * 21 6 5 43 43 H 1.09000 * 109.47344 * 180.02562 * 22 21 6 44 44 H 1.09002 * 109.46985 * 60.00287 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.5300 -2.1637 1.2494 6 6 2.0400 -2.8850 0.0002 7 6 1.5306 -4.3277 0.0005 8 7 3.5051 -2.8849 0.0002 9 6 4.1789 -3.4734 -1.0077 10 8 3.5710 -4.0040 -1.9172 11 7 5.5267 -3.4738 -1.0075 12 6 6.2592 -4.1131 -2.1033 13 6 7.7409 -3.9743 -1.8655 14 1 8.1008 -3.4615 -0.9857 15 6 8.6369 -4.5027 -2.7704 16 7 8.1986 -5.1275 -3.8415 17 14 10.4734 -4.3312 -2.4752 18 1 10.7042 -3.5925 -1.2078 19 1 11.0875 -5.6800 -2.3803 20 1 11.0884 -3.5855 -3.6024 21 6 1.5301 -2.1638 -1.2491 22 6 2.0400 -0.7213 -1.2491 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 -0.2074 2.1393 30 1 3.1300 -0.7207 1.2496 31 1 0.4400 -2.1637 1.2494 32 1 1.8936 -2.6776 2.1392 33 1 1.8942 -4.8412 0.8906 34 1 0.4406 -4.3281 0.0007 35 1 1.8943 -4.8416 -0.8891 36 1 3.9901 -2.4652 0.7279 37 1 6.0117 -3.0502 -0.2820 38 1 5.9957 -5.1697 -2.1489 39 1 5.9962 -3.6320 -3.0454 40 1 8.8289 -5.4989 -4.4783 41 1 1.8931 -2.6780 -2.1390 42 1 0.4401 -2.1638 -1.2491 43 1 1.6763 -0.2074 -2.1389 44 1 3.1300 -0.7213 -1.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875540023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:43 Heat of formation + Delta-G solvation = -81.790464 kcal Electronic energy + Delta-G solvation = -21835.793672 eV Core-core repulsion = 18785.950475 eV Total energy + Delta-G solvation = -3049.843197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75186 -39.77099 -36.52987 -35.75086 -34.41099 -32.47790 -31.76560 -29.67154 -28.94690 -28.08071 -25.22197 -24.66163 -23.75288 -22.14249 -20.97227 -19.69416 -19.16459 -18.04426 -17.02026 -16.52508 -16.24369 -15.97213 -15.64801 -15.33571 -15.03162 -14.91736 -14.65168 -14.31558 -13.98574 -13.98365 -13.28677 -13.15024 -13.05211 -12.84454 -12.79660 -12.74876 -12.66074 -12.51971 -12.21642 -12.15049 -12.06142 -11.72469 -11.43093 -11.23491 -11.08389 -10.98457 -10.79330 -10.53586 -10.04607 -9.49445 -8.27878 -6.44027 1.42980 1.44567 1.57797 2.00892 2.39256 2.40396 3.07150 3.55813 3.70700 3.82011 3.87568 4.09664 4.16553 4.35999 4.47299 4.56769 4.61738 4.70060 4.80907 4.86034 4.89750 4.91159 4.98786 5.06488 5.10589 5.13821 5.17924 5.23602 5.24557 5.29748 5.32701 5.34244 5.41252 5.51877 5.52412 5.59868 5.68949 5.78505 5.87173 5.89182 6.37534 6.68997 7.26076 7.42902 7.87681 8.84784 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028253 B = 0.004266 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.802938 B = 6562.068560 C = 6960.616533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C -0.140 4.140 4 C -0.106 4.106 5 C -0.112 4.112 6 C 0.195 3.805 7 C -0.162 4.162 8 N -0.723 5.723 9 C 0.693 3.307 10 O -0.637 6.637 11 N -0.729 5.729 12 C 0.289 3.711 13 C -0.553 4.553 14 H 0.082 0.918 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.986 3.014 18 H -0.253 1.253 19 H -0.278 1.278 20 H -0.279 1.279 21 C -0.128 4.128 22 C -0.100 4.100 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.404 0.596 37 H 0.401 0.599 38 H -0.017 1.017 39 H -0.018 1.018 40 H 0.268 0.732 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 11.897 14.433 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 C -0.197 4.197 4 C -0.144 4.144 5 C -0.150 4.150 6 C 0.109 3.891 7 C -0.220 4.220 8 N -0.380 5.380 9 C 0.393 3.607 10 O -0.519 6.519 11 N -0.383 5.383 12 C 0.166 3.834 13 C -0.591 4.591 14 H 0.100 0.900 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.809 3.191 18 H -0.177 1.177 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.166 4.166 22 C -0.137 4.137 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.240 0.760 37 H 0.235 0.765 38 H 0.001 0.999 39 H 0.000 1.000 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.120 11.328 13.453 23.194 hybrid contribution 1.482 -0.101 -0.254 1.507 sum -13.639 11.227 13.199 22.052 Atomic orbital electron populations 1.21947 0.93638 1.02277 1.02010 1.20512 0.96409 0.94904 0.94253 1.21844 1.00536 0.95217 1.02088 1.21605 1.00450 0.94693 0.97626 1.21852 1.02568 0.95354 0.95188 1.20241 0.77579 0.94866 0.96436 1.22210 1.01727 0.96378 1.01735 1.45166 1.06948 1.61255 1.24659 1.16309 0.81971 0.79467 0.82935 1.90784 1.68472 1.53069 1.39565 1.45349 1.04180 1.61043 1.27754 1.18317 0.90585 0.90397 0.84127 1.21638 0.90500 1.37826 1.09128 0.90014 1.26063 1.05275 0.94016 0.94237 1.70155 1.37014 1.37339 1.12509 0.85101 0.77168 0.78072 0.78793 1.17689 1.20407 1.20440 1.21934 1.00982 0.95664 0.98068 1.21467 0.99386 0.94866 0.98011 0.91293 0.93230 0.91886 0.93593 0.93113 0.91172 0.89575 0.92474 0.88416 0.90060 0.92400 0.90081 0.94241 0.76019 0.76465 0.99942 1.00049 0.92294 0.94132 0.89790 0.93123 0.94397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 7.78 71.98 0.56 -1.47 16 2 C -0.06 -1.06 0.77 -52.18 -0.04 -1.10 16 3 C -0.14 -2.28 8.47 71.98 0.61 -1.67 16 4 C -0.11 -1.60 4.56 30.60 0.14 -1.46 16 5 C -0.11 -1.80 4.51 30.60 0.14 -1.66 16 6 C 0.19 4.90 0.66 3.60 0.00 4.91 16 7 C -0.16 -4.46 8.40 71.98 0.60 -3.86 16 8 N -0.72 -21.40 4.04 -438.02 -1.77 -23.17 16 9 C 0.69 29.31 7.98 179.06 1.43 30.74 16 10 O -0.64 -32.67 12.55 -3.99 -0.05 -32.72 16 11 N -0.73 -32.47 5.55 -482.31 -2.68 -35.15 16 12 C 0.29 16.48 5.43 85.63 0.46 16.94 16 13 C -0.55 -30.84 9.28 25.60 0.24 -30.60 16 14 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 17 Si 0.99 43.03 29.54 68.60 2.03 45.06 16 18 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 21 C -0.13 -3.57 4.25 30.59 0.13 -3.44 16 22 C -0.10 -2.51 4.57 30.59 0.14 -2.37 16 23 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.89 4.81 -2.39 -0.01 0.88 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.95 6.86 -2.39 -0.02 0.93 16 31 H 0.10 1.27 6.43 -2.39 -0.02 1.26 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.46 6.14 -2.39 -0.01 1.44 16 36 H 0.40 9.49 7.33 -92.70 -0.68 8.81 16 37 H 0.40 14.92 8.34 -92.71 -0.77 14.15 16 38 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.04 1.54 6.18 -2.38 -0.01 1.52 16 42 H 0.08 1.95 6.43 -2.39 -0.02 1.93 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.04 1.14 7.60 -2.39 -0.02 1.12 16 Total: -1.00 -72.65 332.13 2.23 -70.42 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.46 Total: 26.92 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 4.88 Total: 5.62 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -4.16 Total: -115.30 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.05 Total: -32.72 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -72.65 2.23 -70.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.369 kcal (2) G-P(sol) polarization free energy of solvation -72.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds