Wall clock time and date at job start Mon Mar 30 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99974 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00091 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47323 * 89.99961 * 9 7 5 11 11 H 1.48504 * 109.46935 * 209.99740 * 9 7 5 12 12 H 1.48493 * 109.47102 * 329.99583 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 C 1.50696 * 109.46800 * 180.02562 * 15 14 13 17 17 N 1.31046 * 126.46149 * 89.72146 * 16 15 14 18 18 C 1.35021 * 105.59068 * 179.89231 * 17 16 15 19 19 N 1.38842 * 126.38681 * 180.13303 * 18 17 16 20 20 C 1.46496 * 120.00273 * 180.29991 * 19 18 17 21 21 C 1.46503 * 119.99815 * 0.30380 * 19 18 17 22 22 N 1.30629 * 107.22383 * 0.36476 * 18 17 16 23 23 O 1.21284 * 110.12963 * 359.77379 * 22 18 17 24 24 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 25 25 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 26 26 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 28 28 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 29 29 H 0.97003 * 120.00629 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 31 31 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 32 32 H 1.00902 * 111.00582 * 303.95797 * 14 13 2 33 33 H 1.08995 * 109.47167 * 300.00240 * 15 14 13 34 34 H 1.09003 * 109.46442 * 60.00214 * 15 14 13 35 35 H 1.09005 * 109.47126 * 60.00028 * 20 19 18 36 36 H 1.09003 * 109.47717 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.47169 * 300.00522 * 20 19 18 38 38 H 1.08998 * 109.47409 * 90.00167 * 21 19 18 39 39 H 1.08999 * 109.46863 * 209.99991 * 21 19 18 40 40 H 1.08994 * 109.47207 * 329.99333 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6457 0.2777 -4.7993 9 14 2.9638 -1.9882 -3.9027 10 1 2.0248 -3.1326 -4.0200 11 1 3.8128 -1.9178 -5.1191 12 1 3.8254 -2.1753 -2.7079 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 6 1.7077 0.1782 4.8708 17 7 0.5894 0.0527 5.5423 18 6 0.6533 0.9723 6.5288 19 7 -0.3117 1.2081 7.4989 20 6 -0.0993 2.2515 8.5050 21 6 -1.5422 0.4132 7.5164 22 7 1.7901 1.6023 6.3974 23 8 2.4061 1.1587 5.4514 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1264 -0.7993 -1.2056 28 1 1.6055 -1.7198 -1.2951 29 1 1.8930 -0.0451 -5.6800 30 1 3.1264 -0.7993 1.2056 31 1 1.6054 -1.7197 1.2951 32 1 1.9880 0.9874 2.3967 33 1 1.6905 -1.6248 3.7297 34 1 3.2117 -0.7049 3.6405 35 1 0.0171 3.2155 8.0097 36 1 -0.9576 2.2895 9.1759 37 1 0.8003 2.0264 9.0777 38 1 -1.3952 -0.4704 8.1374 39 1 -2.3561 1.0126 7.9242 40 1 -1.7909 0.1062 6.5006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877412852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:01 Heat of formation + Delta-G solvation = 76.433279 kcal Electronic energy + Delta-G solvation = -19921.121948 eV Core-core repulsion = 16774.599504 eV Total energy + Delta-G solvation = -3146.522444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.38094 -37.72731 -37.33158 -35.19233 -34.15242 -32.33745 -31.46994 -28.72559 -27.83049 -26.75659 -26.06797 -24.55019 -23.07547 -22.01562 -21.18987 -19.25235 -18.09728 -17.83799 -16.81142 -16.27085 -15.99464 -15.28855 -15.20444 -14.83768 -14.45732 -14.07939 -13.60765 -13.17278 -12.99227 -12.93049 -12.80013 -12.35611 -12.32852 -12.05157 -11.92664 -11.73782 -11.62022 -10.97020 -10.95749 -10.77034 -10.53919 -10.47209 -9.82271 -9.74423 -9.45870 -9.07386 -8.51586 -8.46396 -8.29510 -6.01462 -3.98668 1.14442 2.26287 2.39321 2.80179 3.31817 3.39400 3.41884 3.76109 4.28967 4.42431 4.46964 4.70692 4.96554 4.98739 5.05418 5.12907 5.25494 5.31854 5.34347 5.40649 5.50218 5.52642 5.64609 5.88585 5.96947 6.22283 6.35213 6.55056 6.55950 6.77660 6.84920 6.95164 7.04098 7.16579 7.25882 7.33658 7.46857 7.82497 8.30760 8.57565 9.04419 9.61092 11.11973 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042526 B = 0.002936 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.259285 B = 9534.567342 C = 9722.731999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.062 0.938 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.063 3.937 14 N -0.680 5.680 15 C 0.151 3.849 16 C 0.211 3.789 17 N -0.492 5.492 18 C 0.422 3.578 19 N -0.592 5.592 20 C 0.109 3.891 21 C 0.108 3.892 22 N -0.437 5.437 23 O 0.058 5.942 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.014 0.986 28 H 0.012 0.988 29 H 0.262 0.738 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.346 0.654 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -0.835 25.493 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.065 4.065 14 N -0.313 5.313 15 C 0.020 3.980 16 C -0.011 4.011 17 N -0.233 5.233 18 C 0.062 3.938 19 N -0.320 5.320 20 C -0.034 4.034 21 C -0.035 4.035 22 N -0.165 5.165 23 O 0.013 5.987 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.134 0.866 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.693 -0.651 25.991 26.138 hybrid contribution 1.424 -0.651 -0.346 1.603 sum -1.269 -1.302 25.645 25.710 Atomic orbital electron populations 1.21615 0.95142 1.00782 1.00786 1.21023 0.96484 0.99157 0.92617 0.91993 1.19615 0.95774 0.95934 0.93352 1.21125 1.35310 1.09618 0.89076 0.90818 1.25037 0.95681 0.96955 0.95958 1.69913 1.47178 1.39319 0.98017 0.86797 0.80617 0.84339 0.77606 1.20369 1.21538 1.19084 1.22259 0.97691 0.97894 0.88668 1.60496 1.64088 1.06323 1.00405 1.20397 0.99168 0.95859 0.82567 1.28429 0.86170 0.89734 0.96789 1.71833 1.20869 1.23433 1.07149 1.22029 0.89544 0.90918 0.91335 1.45043 1.17305 1.40386 1.29294 1.21606 1.02080 0.89587 0.90089 1.21660 0.83700 0.94588 1.03525 1.74799 1.08755 1.24254 1.08729 1.85252 1.41432 1.40198 1.31787 0.93712 0.92172 0.94067 0.96817 0.96928 0.92820 0.94903 0.90810 0.83565 0.86608 0.91342 0.92466 0.90001 0.92566 0.93126 0.90988 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.07 -1.38 2.48 -90.62 -0.22 -1.60 16 3 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 4 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 5 C -0.51 -14.27 8.96 -34.44 -0.31 -14.58 16 6 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 9 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.06 0.91 5.07 -3.83 -0.02 0.89 16 14 N -0.68 -8.64 5.94 -115.06 -0.68 -9.32 16 15 C 0.15 1.56 6.31 -4.98 -0.03 1.53 16 16 C 0.21 2.61 8.01 -12.99 -0.10 2.51 16 17 N -0.49 -6.78 10.96 -12.68 -0.14 -6.92 16 18 C 0.42 5.70 8.35 -321.19 -2.68 3.02 16 19 N -0.59 -6.25 3.39 -193.16 -0.65 -6.90 16 20 C 0.11 0.83 10.51 59.84 0.63 1.46 16 21 C 0.11 0.85 10.57 59.85 0.63 1.48 16 22 N -0.44 -6.20 11.84 28.62 0.34 -5.86 16 23 O 0.06 0.77 11.29 18.08 0.20 0.97 16 24 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 25 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 26 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 28 H 0.01 0.28 7.57 -51.92 -0.39 -0.11 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.35 4.29 8.72 -39.29 -0.34 3.95 16 33 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.37 7.79 -51.93 -0.40 -0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.38 7.92 -51.93 -0.41 -0.03 16 40 H 0.08 0.73 7.68 -51.93 -0.40 0.33 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -32.70 334.22 -8.21 -40.91 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.44 Total: -1.86 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.97 Total: -5.84 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.36 Total: -56.03 kcal Atomic # 8 Polarization: 0.77 SS G_CDS: 0.20 Total: 0.97 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.70 -8.21 -40.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877412852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.346 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds