Wall clock time and date at job start Mon Mar 30 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99974 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00091 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47323 * 89.99961 * 9 7 5 11 11 H 1.48504 * 109.46935 * 209.99740 * 9 7 5 12 12 H 1.48493 * 109.47102 * 329.99583 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 C 1.50696 * 109.46800 * 180.02562 * 15 14 13 17 17 N 1.31046 * 126.46149 * 89.72146 * 16 15 14 18 18 C 1.35021 * 105.59068 * 179.89231 * 17 16 15 19 19 N 1.38842 * 126.38681 * 180.13303 * 18 17 16 20 20 C 1.46496 * 120.00273 * 180.29991 * 19 18 17 21 21 C 1.46503 * 119.99815 * 0.30380 * 19 18 17 22 22 N 1.30629 * 107.22383 * 0.36476 * 18 17 16 23 23 O 1.21284 * 110.12963 * 359.77379 * 22 18 17 24 24 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 25 25 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 26 26 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 28 28 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 29 29 H 0.97003 * 120.00629 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 31 31 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 32 32 H 1.00902 * 111.00582 * 303.95797 * 14 13 2 33 33 H 1.08995 * 109.47167 * 300.00240 * 15 14 13 34 34 H 1.09003 * 109.46442 * 60.00214 * 15 14 13 35 35 H 1.09005 * 109.47126 * 60.00028 * 20 19 18 36 36 H 1.09003 * 109.47717 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.47169 * 300.00522 * 20 19 18 38 38 H 1.08998 * 109.47409 * 90.00167 * 21 19 18 39 39 H 1.08999 * 109.46863 * 209.99991 * 21 19 18 40 40 H 1.08994 * 109.47207 * 329.99333 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6457 0.2777 -4.7993 9 14 2.9638 -1.9882 -3.9027 10 1 2.0248 -3.1326 -4.0200 11 1 3.8128 -1.9178 -5.1191 12 1 3.8254 -2.1753 -2.7079 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 6 1.7077 0.1782 4.8708 17 7 0.5894 0.0527 5.5423 18 6 0.6533 0.9723 6.5288 19 7 -0.3117 1.2081 7.4989 20 6 -0.0993 2.2515 8.5050 21 6 -1.5422 0.4132 7.5164 22 7 1.7901 1.6023 6.3974 23 8 2.4061 1.1587 5.4514 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1264 -0.7993 -1.2056 28 1 1.6055 -1.7198 -1.2951 29 1 1.8930 -0.0451 -5.6800 30 1 3.1264 -0.7993 1.2056 31 1 1.6054 -1.7197 1.2951 32 1 1.9880 0.9874 2.3967 33 1 1.6905 -1.6248 3.7297 34 1 3.2117 -0.7049 3.6405 35 1 0.0171 3.2155 8.0097 36 1 -0.9576 2.2895 9.1759 37 1 0.8003 2.0264 9.0777 38 1 -1.3952 -0.4704 8.1374 39 1 -2.3561 1.0126 7.9242 40 1 -1.7909 0.1062 6.5006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877412852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:01 Heat of formation + Delta-G solvation = 53.833054 kcal Electronic energy + Delta-G solvation = -19922.101968 eV Core-core repulsion = 16774.599504 eV Total energy + Delta-G solvation = -3147.502463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.34201 -38.55491 -38.50660 -36.35944 -35.39301 -34.13556 -32.67006 -29.75371 -29.16150 -27.97990 -26.84991 -25.93602 -24.07078 -23.59086 -22.05824 -20.77322 -19.09280 -18.91752 -18.68658 -17.16713 -17.00159 -16.49333 -16.08874 -15.93550 -15.58730 -15.53377 -14.93093 -14.62016 -14.20362 -14.00514 -13.56774 -13.49613 -13.37240 -13.04123 -12.97237 -12.91698 -12.83344 -12.74366 -12.44817 -12.15633 -11.93152 -11.68715 -11.50284 -11.41860 -11.12583 -11.00966 -10.69767 -9.43021 -9.10722 -8.22072 -6.24560 0.19485 1.40625 1.41942 1.42285 1.51571 1.53788 1.90693 2.41901 2.88259 3.13683 3.30399 3.63156 4.03832 4.15805 4.23536 4.36240 4.38697 4.41470 4.47587 4.53506 4.65124 4.68421 4.78092 4.85477 4.90716 4.95586 4.98859 5.00068 5.14720 5.43946 5.45882 5.58843 5.73749 5.77723 5.86947 5.93906 6.02719 6.29821 6.39492 6.84054 7.36897 7.38981 8.94923 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.042526 B = 0.002936 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.259285 B = 9534.567342 C = 9722.731999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 H 0.050 0.950 4 C -0.007 4.007 5 C -0.518 4.518 6 H 0.031 0.969 7 C -0.003 4.003 8 N -0.958 5.958 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.240 1.240 13 C 0.078 3.922 14 N -0.690 5.690 15 C 0.156 3.844 16 C 0.216 3.784 17 N -0.512 5.512 18 C 0.410 3.590 19 N -0.595 5.595 20 C 0.106 3.894 21 C 0.105 3.895 22 N -0.460 5.460 23 O 0.050 5.950 24 H 0.059 0.941 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.347 0.653 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -2.717 27.670 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.045 4.045 5 C -0.557 4.557 6 H 0.049 0.951 7 C -0.199 4.199 8 N -0.599 5.599 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.163 1.163 13 C -0.050 4.050 14 N -0.323 5.323 15 C 0.026 3.974 16 C -0.006 4.006 17 N -0.253 5.253 18 C 0.050 3.950 19 N -0.323 5.323 20 C -0.036 4.036 21 C -0.036 4.036 22 N -0.191 5.191 23 O 0.008 5.992 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.034 -2.534 28.205 28.391 hybrid contribution 1.113 0.041 -0.983 1.486 sum -0.920 -2.493 27.221 27.351 Atomic orbital electron populations 1.21512 0.95483 1.00795 0.99680 1.20897 0.96141 0.98673 0.93326 0.93197 1.19574 0.96257 0.95796 0.92864 1.21496 1.34105 1.08617 0.91442 0.95083 1.26061 0.97145 1.01146 0.95512 1.70088 1.49307 1.41797 0.98735 0.85651 0.79286 0.79257 0.78383 1.19425 1.21629 1.16294 1.21965 0.98430 0.97560 0.87085 1.60369 1.64773 1.06466 1.00705 1.20541 1.00925 0.95473 0.80488 1.28821 0.85697 0.89200 0.96847 1.71839 1.21614 1.24109 1.07781 1.22458 0.89998 0.90709 0.91861 1.45529 1.17200 1.40798 1.28819 1.21782 1.03596 0.88412 0.89814 1.21813 0.83574 0.95377 1.02877 1.74767 1.09444 1.25298 1.09612 1.85212 1.41576 1.40532 1.31877 0.92187 0.95810 0.93416 0.95941 0.96107 0.92801 0.93358 0.89737 0.83483 0.85340 0.88473 0.93289 0.86514 0.92927 0.92227 0.87997 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.89 71.98 0.64 -3.69 16 2 C -0.07 -2.57 2.48 -10.80 -0.03 -2.60 16 3 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 4 C -0.01 -0.31 3.52 29.85 0.10 -0.21 16 5 C -0.52 -29.38 8.96 25.60 0.23 -29.15 16 6 H 0.03 1.96 7.30 -2.91 -0.02 1.94 16 7 C 0.00 -0.18 5.47 84.66 0.46 0.29 16 8 N -0.96 -60.59 13.96 21.45 0.30 -60.29 16 9 Si 0.95 43.67 27.47 68.60 1.88 45.55 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 13 C 0.08 2.00 5.07 86.30 0.44 2.44 16 14 N -0.69 -15.73 5.94 -517.93 -3.08 -18.81 16 15 C 0.16 2.75 6.31 85.55 0.54 3.29 16 16 C 0.22 5.01 8.01 88.36 0.71 5.72 16 17 N -0.51 -13.52 10.96 -311.45 -3.41 -16.94 16 18 C 0.41 10.75 8.35 260.92 2.18 12.93 16 19 N -0.59 -11.73 3.39 -767.84 -2.60 -14.33 16 20 C 0.11 1.44 10.51 127.77 1.34 2.78 16 21 C 0.11 1.47 10.57 127.77 1.35 2.82 16 22 N -0.46 -12.81 11.84 -66.71 -0.79 -13.60 16 23 O 0.05 1.29 11.29 74.77 0.84 2.14 16 24 H 0.06 2.00 7.75 -2.39 -0.02 1.99 16 25 H 0.02 1.01 6.95 -2.39 -0.02 0.99 16 26 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 28 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.35 7.93 8.72 -89.69 -0.78 7.14 16 33 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.12 0.72 7.79 -2.39 -0.02 0.71 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.10 0.78 7.92 -2.39 -0.02 0.76 16 40 H 0.06 1.07 7.68 -2.39 -0.02 1.05 16 Total: -1.00 -72.82 334.22 1.31 -71.52 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.19 Total: 10.16 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 7.97 Total: -5.39 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -9.58 Total: -123.97 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.84 Total: 2.14 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -72.82 1.31 -71.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877412852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.350 kcal (2) G-P(sol) polarization free energy of solvation -72.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds