Wall clock time and date at job start Mon Mar 30 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.53004 * 109.47252 * 119.99898 * 2 1 3 5 5 C 1.50699 * 109.46847 * 295.00216 * 4 2 1 6 6 H 1.08002 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99573 * 180.27665 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 C 1.52999 * 109.47141 * 240.00071 * 2 1 3 14 14 N 1.46897 * 109.47460 * 65.00083 * 13 2 1 15 15 C 1.46899 * 111.00155 * 179.97438 * 14 13 2 16 16 C 1.50696 * 109.46868 * 179.97438 * 15 14 13 17 17 N 1.31041 * 126.46344 * 89.71167 * 16 15 14 18 18 C 1.35023 * 105.59526 * 179.89430 * 17 16 15 19 19 N 1.38838 * 126.39461 * 180.14171 * 18 17 16 20 20 C 1.46498 * 120.00259 * 180.30543 * 19 18 17 21 21 C 1.46503 * 119.99378 * 0.29730 * 19 18 17 22 22 N 1.30634 * 107.21975 * 0.37036 * 18 17 16 23 23 O 1.21293 * 110.13254 * 359.76748 * 22 18 17 24 24 H 1.08998 * 109.46866 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47348 * 299.99780 * 1 2 3 26 26 H 1.09001 * 109.47203 * 60.00346 * 1 2 3 27 27 H 1.08992 * 109.47264 * 175.00390 * 4 2 1 28 28 H 1.09005 * 109.46510 * 54.99977 * 4 2 1 29 29 H 0.97004 * 119.99485 * 179.72881 * 8 7 5 30 30 H 1.08999 * 109.47079 * 185.00055 * 13 2 1 31 31 H 1.09002 * 109.47002 * 304.99434 * 13 2 1 32 32 H 1.00902 * 110.99904 * 56.03912 * 14 13 2 33 33 H 1.09000 * 109.47069 * 299.99468 * 15 14 13 34 34 H 1.09001 * 109.46872 * 59.99839 * 15 14 13 35 35 H 1.08990 * 109.47362 * 89.99918 * 20 19 18 36 36 H 1.09005 * 109.46468 * 209.99570 * 20 19 18 37 37 H 1.08997 * 109.47058 * 329.98821 * 20 19 18 38 38 H 1.08995 * 109.46944 * 90.00771 * 21 19 18 39 39 H 1.09007 * 109.46902 * 210.00154 * 21 19 18 40 40 H 1.09000 * 109.47621 * 330.00230 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 1.6397 0.2742 4.7997 9 14 2.9615 -1.9895 3.9029 10 1 4.4152 -1.6870 3.8788 11 1 2.6132 -2.6432 5.1900 12 1 2.6267 -2.9002 2.7788 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1259 -0.6266 -3.6671 16 6 1.7088 0.1786 -4.8708 17 7 2.3911 1.1438 -5.4366 18 6 1.6332 1.5657 -6.4714 19 7 1.9513 2.5784 -7.3663 20 6 1.0173 2.9276 -8.4396 21 6 3.2209 3.2979 -7.2371 22 7 0.5427 0.8465 -6.4705 23 8 0.5707 0.0468 -5.5591 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.1263 -0.7994 1.2057 28 1 1.6053 -1.7198 1.2951 29 1 1.8832 -0.0510 5.6805 30 1 3.1263 -0.7995 -1.2056 31 1 1.6054 -1.7198 -1.2951 32 1 1.9881 0.9873 -2.3966 33 1 3.2128 -0.7036 -3.6400 34 1 1.6922 -1.6246 -3.7300 35 1 0.3338 3.7009 -8.0892 36 1 1.5747 3.2980 -9.3000 37 1 0.4487 2.0436 -8.7283 38 1 3.9876 2.7896 -7.8217 39 1 3.0999 4.3170 -7.6045 40 1 3.5197 3.3225 -6.1892 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877412853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:04 Heat of formation + Delta-G solvation = 76.219511 kcal Electronic energy + Delta-G solvation = -19916.049017 eV Core-core repulsion = 16769.517303 eV Total energy + Delta-G solvation = -3146.531714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.37472 -37.73547 -37.34380 -35.22465 -34.11574 -32.33415 -31.47508 -28.75300 -27.83138 -26.76031 -26.06038 -24.56094 -23.03088 -21.98618 -21.27869 -19.25243 -18.07183 -17.90658 -16.78640 -16.23425 -15.67848 -15.46233 -15.25836 -14.82108 -14.61265 -14.09413 -13.75760 -13.06582 -12.97963 -12.92931 -12.53362 -12.42877 -12.34134 -12.07357 -12.01234 -11.74275 -11.72158 -11.02115 -10.95321 -10.74147 -10.55786 -10.41184 -9.94143 -9.67282 -9.47190 -9.07588 -8.51368 -8.47670 -8.30108 -6.01548 -3.98711 1.14437 2.24526 2.36088 2.82635 3.31425 3.39353 3.42227 3.73996 4.30626 4.40283 4.46950 4.75699 4.93764 4.96363 5.04659 5.12099 5.24202 5.31821 5.34299 5.38840 5.48005 5.50070 5.64470 5.83666 5.96831 6.22080 6.35053 6.54213 6.55514 6.77899 6.83269 6.95622 7.03756 7.16376 7.24403 7.33938 7.47606 7.82507 8.30382 8.57528 9.04358 9.61025 11.11905 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039614 B = 0.002930 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.649624 B = 9554.582063 C = 9622.962711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.062 3.938 14 N -0.681 5.681 15 C 0.148 3.852 16 C 0.216 3.784 17 N -0.509 5.509 18 C 0.423 3.577 19 N -0.592 5.592 20 C 0.107 3.893 21 C 0.108 3.892 22 N -0.438 5.438 23 O 0.070 5.930 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.009 0.991 28 H 0.017 0.983 29 H 0.262 0.738 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.348 0.652 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 1.703 -25.262 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.065 4.065 14 N -0.314 5.314 15 C 0.017 3.983 16 C -0.006 4.006 17 N -0.251 5.251 18 C 0.063 3.937 19 N -0.321 5.321 20 C -0.036 4.036 21 C -0.034 4.034 22 N -0.165 5.165 23 O 0.026 5.974 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.166 0.834 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.619 1.823 -25.768 25.883 hybrid contribution 1.533 -0.571 0.356 1.674 sum 3.152 1.252 -25.412 25.637 Atomic orbital electron populations 1.21616 0.95098 1.00822 1.00816 1.21023 0.96522 0.99127 0.92621 0.92063 1.19616 0.95428 0.96292 0.93344 1.21126 1.35337 1.09583 0.89083 0.90820 1.25040 0.95732 0.96907 0.95962 1.69918 1.47150 1.39360 0.97994 0.86800 0.80540 0.84515 0.77520 1.20454 1.21506 1.19005 1.22259 0.97711 0.97891 0.88686 1.60542 1.63980 1.06501 1.00419 1.20393 0.99319 0.95933 0.82646 1.28383 0.82701 0.93384 0.96109 1.71808 1.30572 1.13570 1.09110 1.21980 0.87724 0.93000 0.91031 1.45044 1.21603 1.35414 1.29994 1.21625 0.92451 1.01257 0.88273 1.21620 0.83175 0.95332 1.03316 1.74809 1.21311 1.09220 1.11206 1.85272 1.36843 1.44579 1.30755 0.94006 0.92150 0.93694 0.97274 0.96457 0.92824 0.94953 0.90749 0.83382 0.90513 0.87217 0.92916 0.90759 0.91023 0.93113 0.90982 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.89 37.16 0.33 -2.01 16 2 C -0.07 -1.38 2.48 -90.62 -0.22 -1.60 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.27 8.96 -34.44 -0.31 -14.58 16 6 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 9 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.06 0.90 5.07 -3.83 -0.02 0.88 16 14 N -0.68 -8.68 5.94 -115.06 -0.68 -9.36 16 15 C 0.15 1.53 6.31 -4.98 -0.03 1.50 16 16 C 0.22 2.67 8.01 -12.99 -0.10 2.56 16 17 N -0.51 -6.77 10.95 -12.67 -0.14 -6.91 16 18 C 0.42 5.64 8.33 -321.19 -2.68 2.97 16 19 N -0.59 -6.17 3.39 -193.15 -0.65 -6.82 16 20 C 0.11 0.81 10.59 59.85 0.63 1.44 16 21 C 0.11 0.83 10.60 59.85 0.63 1.47 16 22 N -0.44 -6.25 11.55 28.63 0.33 -5.92 16 23 O 0.07 0.96 11.30 18.07 0.20 1.17 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 26 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 27 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 28 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.35 4.50 8.72 -39.29 -0.34 4.16 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.07 0.61 7.69 -51.93 -0.40 0.21 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 40 H 0.08 0.68 7.69 -51.93 -0.40 0.29 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -32.41 334.00 -8.21 -40.62 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.44 Total: -1.67 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.96 Total: -5.92 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.37 Total: -56.04 kcal Atomic # 8 Polarization: 0.96 SS G_CDS: 0.20 Total: 1.17 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.41 -8.21 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877412853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.835 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds