Wall clock time and date at job start Mon Mar 30 2020 00:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.53004 * 109.47252 * 119.99898 * 2 1 3 5 5 C 1.50699 * 109.46847 * 295.00216 * 4 2 1 6 6 H 1.08002 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99573 * 180.27665 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 C 1.52999 * 109.47141 * 240.00071 * 2 1 3 14 14 N 1.46897 * 109.47460 * 65.00083 * 13 2 1 15 15 C 1.46899 * 111.00155 * 179.97438 * 14 13 2 16 16 C 1.50696 * 109.46868 * 179.97438 * 15 14 13 17 17 N 1.31041 * 126.46344 * 89.71167 * 16 15 14 18 18 C 1.35023 * 105.59526 * 179.89430 * 17 16 15 19 19 N 1.38838 * 126.39461 * 180.14171 * 18 17 16 20 20 C 1.46498 * 120.00259 * 180.30543 * 19 18 17 21 21 C 1.46503 * 119.99378 * 0.29730 * 19 18 17 22 22 N 1.30634 * 107.21975 * 0.37036 * 18 17 16 23 23 O 1.21293 * 110.13254 * 359.76748 * 22 18 17 24 24 H 1.08998 * 109.46866 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47348 * 299.99780 * 1 2 3 26 26 H 1.09001 * 109.47203 * 60.00346 * 1 2 3 27 27 H 1.08992 * 109.47264 * 175.00390 * 4 2 1 28 28 H 1.09005 * 109.46510 * 54.99977 * 4 2 1 29 29 H 0.97004 * 119.99485 * 179.72881 * 8 7 5 30 30 H 1.08999 * 109.47079 * 185.00055 * 13 2 1 31 31 H 1.09002 * 109.47002 * 304.99434 * 13 2 1 32 32 H 1.00902 * 110.99904 * 56.03912 * 14 13 2 33 33 H 1.09000 * 109.47069 * 299.99468 * 15 14 13 34 34 H 1.09001 * 109.46872 * 59.99839 * 15 14 13 35 35 H 1.08990 * 109.47362 * 89.99918 * 20 19 18 36 36 H 1.09005 * 109.46468 * 209.99570 * 20 19 18 37 37 H 1.08997 * 109.47058 * 329.98821 * 20 19 18 38 38 H 1.08995 * 109.46944 * 90.00771 * 21 19 18 39 39 H 1.09007 * 109.46902 * 210.00154 * 21 19 18 40 40 H 1.09000 * 109.47621 * 330.00230 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 1.6397 0.2742 4.7997 9 14 2.9615 -1.9895 3.9029 10 1 4.4152 -1.6870 3.8788 11 1 2.6132 -2.6432 5.1900 12 1 2.6267 -2.9002 2.7788 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1259 -0.6266 -3.6671 16 6 1.7088 0.1786 -4.8708 17 7 2.3911 1.1438 -5.4366 18 6 1.6332 1.5657 -6.4714 19 7 1.9513 2.5784 -7.3663 20 6 1.0173 2.9276 -8.4396 21 6 3.2209 3.2979 -7.2371 22 7 0.5427 0.8465 -6.4705 23 8 0.5707 0.0468 -5.5591 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.1263 -0.7994 1.2057 28 1 1.6053 -1.7198 1.2951 29 1 1.8832 -0.0510 5.6805 30 1 3.1263 -0.7995 -1.2056 31 1 1.6054 -1.7198 -1.2951 32 1 1.9881 0.9873 -2.3966 33 1 3.2128 -0.7036 -3.6400 34 1 1.6922 -1.6246 -3.7300 35 1 0.3338 3.7009 -8.0892 36 1 1.5747 3.2980 -9.3000 37 1 0.4487 2.0436 -8.7283 38 1 3.9876 2.7896 -7.8217 39 1 3.0999 4.3170 -7.6045 40 1 3.5197 3.3225 -6.1892 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877412853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:03 Heat of formation + Delta-G solvation = 53.943769 kcal Electronic energy + Delta-G solvation = -19917.014965 eV Core-core repulsion = 16769.517303 eV Total energy + Delta-G solvation = -3147.497662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.33275 -38.54955 -38.52527 -36.39262 -35.35909 -34.12464 -32.67249 -29.76285 -29.17371 -27.97710 -26.83837 -25.93886 -24.07745 -23.51276 -22.14779 -20.76251 -19.07104 -18.94948 -18.72018 -17.11706 -16.65448 -16.50283 -16.33330 -15.93954 -15.59099 -15.53511 -15.11893 -14.71475 -14.11717 -13.83217 -13.56063 -13.51241 -13.26120 -13.08071 -13.01917 -12.96040 -12.90095 -12.79193 -12.36658 -12.07801 -11.97624 -11.75960 -11.52954 -11.40865 -11.14348 -11.00743 -10.69464 -9.45613 -9.10345 -8.22231 -6.24692 0.19543 1.39853 1.40072 1.42481 1.50016 1.54021 1.93697 2.41867 2.85923 3.13524 3.31308 3.61610 4.04742 4.13818 4.28266 4.32967 4.38582 4.40987 4.45099 4.53378 4.64506 4.68908 4.78148 4.82579 4.89912 4.94312 4.97275 4.99554 5.15903 5.44403 5.45213 5.59328 5.74237 5.77425 5.86171 5.93552 6.01838 6.26530 6.39234 6.83904 7.36471 7.38829 8.94790 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.039614 B = 0.002930 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.649624 B = 9554.582063 C = 9622.962711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.072 4.072 3 H 0.047 0.953 4 C -0.007 4.007 5 C -0.519 4.519 6 H 0.031 0.969 7 C -0.003 4.003 8 N -0.958 5.958 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.240 1.240 13 C 0.077 3.923 14 N -0.688 5.688 15 C 0.153 3.847 16 C 0.221 3.779 17 N -0.523 5.523 18 C 0.412 3.588 19 N -0.595 5.595 20 C 0.103 3.897 21 C 0.106 3.894 22 N -0.461 5.461 23 O 0.057 5.943 24 H 0.049 0.951 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.020 0.980 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.345 0.655 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.960 0.239 -27.388 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.045 4.045 5 C -0.557 4.557 6 H 0.049 0.951 7 C -0.199 4.199 8 N -0.599 5.599 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.216 1.216 12 H -0.163 1.163 13 C -0.051 4.051 14 N -0.322 5.322 15 C 0.023 3.977 16 C -0.001 4.001 17 N -0.265 5.265 18 C 0.052 3.948 19 N -0.324 5.324 20 C -0.039 4.039 21 C -0.036 4.036 22 N -0.192 5.192 23 O 0.015 5.985 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.163 0.837 33 H 0.114 0.886 34 H 0.150 0.850 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.063 0.364 -27.927 28.097 hybrid contribution 1.041 0.032 0.977 1.428 sum 4.104 0.396 -26.950 27.264 Atomic orbital electron populations 1.21520 0.95328 1.00942 0.99759 1.20896 0.96281 0.98545 0.93335 0.93434 1.19575 0.96033 0.96033 0.92856 1.21496 1.34126 1.08598 0.91454 0.95103 1.26066 0.97190 1.01108 0.95509 1.70093 1.49303 1.41815 0.98714 0.85651 0.79024 0.79804 0.78096 1.19336 1.21649 1.16327 1.21977 0.98341 0.97699 0.87092 1.60428 1.64514 1.06451 1.00766 1.20556 1.00511 0.96122 0.80551 1.28785 0.82121 0.93018 0.96177 1.71816 1.31053 1.14118 1.09506 1.22405 0.87529 0.93469 0.91431 1.45526 1.22629 1.34532 1.29679 1.21795 0.92642 1.00832 0.88595 1.21776 0.82410 0.96703 1.02738 1.74782 1.22207 1.10170 1.12091 1.85230 1.37407 1.44822 1.31043 0.93218 0.95826 0.92048 0.96199 0.95826 0.92802 0.93637 0.89368 0.83669 0.88618 0.84962 0.92574 0.87588 0.92246 0.92171 0.88203 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.89 71.98 0.64 -3.70 16 2 C -0.07 -2.58 2.48 -10.79 -0.03 -2.61 16 3 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.01 -0.31 3.52 29.85 0.10 -0.21 16 5 C -0.52 -29.41 8.96 25.60 0.23 -29.18 16 6 H 0.03 1.95 7.30 -2.91 -0.02 1.93 16 7 C 0.00 -0.18 5.47 84.66 0.46 0.28 16 8 N -0.96 -60.60 13.96 21.45 0.30 -60.30 16 9 Si 0.95 43.66 27.47 68.60 1.88 45.54 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 13 C 0.08 1.98 5.07 86.30 0.44 2.42 16 14 N -0.69 -15.78 5.94 -517.95 -3.08 -18.86 16 15 C 0.15 2.69 6.31 85.56 0.54 3.23 16 16 C 0.22 5.10 8.01 88.36 0.71 5.81 16 17 N -0.52 -13.30 10.95 -311.39 -3.41 -16.71 16 18 C 0.41 10.65 8.33 260.92 2.17 12.82 16 19 N -0.60 -11.55 3.39 -767.78 -2.60 -14.15 16 20 C 0.10 1.40 10.59 127.77 1.35 2.75 16 21 C 0.11 1.43 10.60 127.77 1.35 2.78 16 22 N -0.46 -12.95 11.55 -66.65 -0.77 -13.72 16 23 O 0.06 1.51 11.30 74.71 0.84 2.36 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.02 1.00 6.95 -2.39 -0.02 0.98 16 26 H 0.06 2.02 7.75 -2.39 -0.02 2.00 16 27 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 28 H 0.02 1.02 7.20 -2.38 -0.02 1.00 16 29 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.35 8.31 8.72 -89.69 -0.78 7.53 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.74 8.07 -2.38 -0.02 0.72 16 37 H 0.06 0.96 7.69 -2.39 -0.02 0.94 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.78 8.07 -2.38 -0.02 0.76 16 40 H 0.06 1.03 7.69 -2.39 -0.02 1.01 16 Total: -1.00 -72.15 334.00 1.33 -70.82 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.19 Total: 10.62 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 7.98 Total: -5.60 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -9.56 Total: -123.75 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.84 Total: 2.36 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -72.15 1.33 -70.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877412853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.762 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds