Wall clock time and date at job start Mon Mar 30 2020 00:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46770 * 2 1 4 4 N 1.46498 * 109.46452 * 179.97438 * 3 2 1 5 5 C 1.35321 * 125.86630 * 124.97830 * 4 3 2 6 6 C 1.35346 * 106.17575 * 179.97438 * 5 4 3 7 7 C 1.50699 * 126.75053 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47457 * 94.99796 * 7 6 5 9 9 C 1.36933 * 120.00036 * 89.99890 * 8 7 6 10 10 H 1.08004 * 119.99968 * 326.06055 * 9 8 7 11 11 C 1.38812 * 119.99979 * 146.05722 * 9 8 7 12 12 N 1.31619 * 120.00051 * 336.75771 * 11 9 8 13 13 Si 1.86799 * 119.99805 * 156.75212 * 11 9 8 14 14 H 1.48500 * 109.47048 * 90.00309 * 13 11 9 15 15 H 1.48506 * 109.47306 * 210.00028 * 13 11 9 16 16 H 1.48498 * 109.47303 * 330.00166 * 13 11 9 17 17 C 1.46495 * 119.99753 * 269.99676 * 8 7 6 18 18 C 1.53004 * 109.46803 * 92.19887 * 17 8 7 19 19 O 1.42899 * 109.47013 * 64.99903 * 18 17 8 20 20 C 1.42909 * 113.99777 * 180.02562 * 19 18 17 21 21 N 1.33773 * 106.49780 * 359.97438 * 6 5 4 22 22 N 1.28638 * 108.88664 * 0.02562 * 21 6 5 23 23 H 1.08994 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46919 * 300.00131 * 1 2 3 25 25 H 1.09000 * 109.46687 * 59.99872 * 1 2 3 26 26 H 1.08998 * 109.46553 * 240.00152 * 2 1 3 27 27 H 1.09000 * 109.46687 * 120.00128 * 2 1 3 28 28 H 1.08999 * 109.46946 * 60.00606 * 3 2 1 29 29 H 1.08997 * 109.47198 * 299.99823 * 3 2 1 30 30 H 1.07995 * 126.90794 * 0.02562 * 5 4 3 31 31 H 1.09010 * 109.46847 * 214.99768 * 7 6 5 32 32 H 1.09001 * 109.46981 * 334.99349 * 7 6 5 33 33 H 0.96997 * 119.99985 * 179.97438 * 12 11 9 34 34 H 1.08995 * 109.46967 * 212.19384 * 17 8 7 35 35 H 1.09000 * 109.47519 * 332.19871 * 17 8 7 36 36 H 1.08997 * 109.46985 * 184.99926 * 18 17 8 37 37 H 1.09006 * 109.47383 * 304.99584 * 18 17 8 38 38 H 1.09004 * 109.46922 * 59.99949 * 20 19 18 39 39 H 1.08998 * 109.46881 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.46844 * 300.00201 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2982 2.0710 -0.8977 6 6 5.5724 1.8100 -0.5231 7 6 6.8285 2.2880 -1.2048 8 7 7.3011 3.5129 -0.5547 9 6 8.1747 3.4366 0.4970 10 1 8.1139 2.6110 1.1907 11 6 9.1386 4.4202 0.6714 12 7 9.5301 5.1471 -0.3536 13 14 9.8797 4.7123 2.3610 14 1 11.0805 3.8550 2.5297 15 1 10.2684 6.1397 2.4911 16 1 8.8797 4.3744 3.4055 17 6 6.8391 4.8194 -1.0299 18 6 5.5989 5.2403 -0.2388 19 8 5.9529 5.4398 1.1312 20 6 4.8600 5.8369 1.9620 21 7 5.4974 1.0452 0.5719 22 7 4.2588 0.8454 0.8562 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.9788 2.6625 -1.7429 31 1 7.5969 1.5182 -1.1319 32 1 6.6171 2.4921 -2.2545 33 1 10.2033 5.8346 -0.2316 34 1 7.6284 5.5575 -0.8879 35 1 6.5895 4.7534 -2.0888 36 1 5.2031 6.1686 -0.6506 37 1 4.8412 4.4597 -0.3084 38 1 4.0874 5.0683 1.9380 39 1 5.2106 5.9673 2.9858 40 1 4.4484 6.7774 1.5959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877579536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:46 Heat of formation + Delta-G solvation = 75.195177 kcal Electronic energy + Delta-G solvation = -21415.273715 eV Core-core repulsion = 18268.697583 eV Total energy + Delta-G solvation = -3146.576132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.65445 -37.18294 -36.07322 -35.18015 -32.43980 -31.68739 -30.36359 -28.76744 -27.03624 -25.70622 -25.60560 -23.10017 -22.60749 -21.37007 -20.72877 -19.81728 -17.01338 -16.61235 -16.12575 -15.65319 -15.21793 -14.91184 -14.55265 -14.41004 -13.98422 -13.70188 -13.51853 -13.25908 -13.09661 -12.62866 -12.29808 -11.80392 -11.78718 -11.43530 -11.40684 -11.12728 -10.90981 -10.72799 -10.62438 -10.59964 -10.19158 -10.00535 -9.83709 -9.60118 -9.50740 -8.87967 -8.47618 -8.25990 -6.50979 -5.59935 -3.11296 2.09535 2.68942 3.26044 3.55294 3.60716 3.71532 4.34048 4.51952 4.70468 4.76701 4.81021 4.88571 5.05540 5.12603 5.31254 5.46877 5.53914 5.63542 5.66733 5.70658 5.77438 5.80079 5.83790 5.89189 6.09240 6.10176 6.18316 6.35059 6.51949 6.68433 6.70946 6.85826 6.91664 7.05487 7.75132 8.07730 8.14831 8.69230 9.14795 9.36072 9.99806 10.50057 11.42518 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.005474 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.138066 B = 5114.170384 C = 5342.162782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.120 3.880 4 N -0.302 5.302 5 C -0.069 4.069 6 C -0.001 4.001 7 C 0.217 3.783 8 N -0.564 5.564 9 C -0.231 4.231 10 H 0.062 0.938 11 C 0.017 3.983 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.291 1.291 15 H -0.293 1.293 16 H -0.279 1.279 17 C 0.136 3.864 18 C 0.046 3.954 19 O -0.349 6.349 20 C 0.033 3.967 21 N -0.254 5.254 22 N -0.103 5.103 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.177 0.823 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.251 0.749 34 H 0.111 0.889 35 H 0.040 0.960 36 H 0.020 0.980 37 H 0.026 0.974 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.686 -3.771 -3.561 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.002 4.002 4 N -0.097 5.097 5 C -0.219 4.219 6 C -0.142 4.142 7 C 0.087 3.913 8 N -0.282 5.282 9 C -0.360 4.360 10 H 0.080 0.920 11 C -0.181 4.181 12 N -0.540 5.540 13 Si 0.728 3.272 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.205 1.205 17 C 0.009 3.991 18 C -0.033 4.033 19 O -0.267 6.267 20 C -0.065 4.065 21 N -0.121 5.121 22 N -0.082 5.082 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.194 0.806 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.092 0.908 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -17.306 -4.540 -2.241 18.032 hybrid contribution -0.509 1.183 -0.015 1.288 sum -17.816 -3.357 -2.257 18.269 Atomic orbital electron populations 1.21702 0.94259 1.02552 1.02159 1.21805 0.96538 0.94964 1.04148 1.22009 0.74136 0.99589 1.04499 1.47295 1.08261 1.34655 1.19449 1.23298 0.91385 1.06758 1.00441 1.23777 0.97007 0.98187 0.95264 1.19246 0.88885 0.90815 0.92347 1.43676 1.49123 0.98397 1.37012 1.18944 1.06655 1.09413 1.01003 0.91980 1.24863 0.96219 1.00359 0.96697 1.69943 1.31005 1.24838 1.28264 0.86376 0.78456 0.76742 0.85603 1.21830 1.21894 1.20475 1.21190 0.94841 0.90994 0.92067 1.23451 1.00365 0.96161 0.83300 1.88253 1.31041 1.88447 1.18937 1.22588 0.91143 0.96806 0.95955 1.75084 1.08213 1.15442 1.13337 1.78189 0.97109 1.17998 1.14916 0.91851 0.92217 0.92397 0.91172 0.90052 0.89075 0.88339 0.80558 0.91199 0.92759 0.93931 0.87141 0.94168 0.96203 0.95556 0.95923 0.90800 0.95635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.14 -1.19 6.06 -26.72 -0.16 -1.35 16 3 C 0.12 1.18 6.46 -4.04 -0.03 1.15 16 4 N -0.30 -4.61 3.44 -61.26 -0.21 -4.82 16 5 C -0.07 -1.10 9.98 -17.04 -0.17 -1.27 16 6 C 0.00 -0.02 6.53 -82.78 -0.54 -0.57 16 7 C 0.22 4.58 6.27 -5.19 -0.03 4.54 16 8 N -0.56 -14.00 2.43 -174.61 -0.42 -14.43 16 9 C -0.23 -6.55 8.87 -15.06 -0.13 -6.68 16 10 H 0.06 1.87 7.93 -52.48 -0.42 1.45 16 11 C 0.02 0.48 4.96 -17.43 -0.09 0.40 16 12 N -0.90 -26.16 11.30 55.49 0.63 -25.53 16 13 Si 0.90 23.39 29.61 -169.99 -5.03 18.35 16 14 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 15 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 16 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 17 C 0.14 3.13 5.80 -4.04 -0.02 3.11 16 18 C 0.05 0.97 6.28 37.16 0.23 1.20 16 19 O -0.35 -8.21 10.07 -35.23 -0.35 -8.57 16 20 C 0.03 0.60 11.01 101.05 1.11 1.71 16 21 N -0.25 -5.62 12.41 33.29 0.41 -5.20 16 22 N -0.10 -1.99 12.92 60.35 0.78 -1.21 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.07 1.55 8.04 -51.92 -0.42 1.13 16 32 H 0.05 0.98 7.88 -51.93 -0.41 0.57 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.11 2.97 5.31 -51.93 -0.28 2.69 16 35 H 0.04 0.82 7.87 -51.93 -0.41 0.41 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.03 0.52 6.19 -51.93 -0.32 0.20 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -34.05 334.69 -5.07 -39.12 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -6.45 Total: -4.46 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 0.54 Total: 1.71 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 1.19 Total: -51.20 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.35 Total: -8.57 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.03 Total: 18.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.05 -5.07 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877579536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.316 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds