Wall clock time and date at job start Mon Mar 30 2020 00:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46770 * 2 1 4 4 N 1.46498 * 109.46452 * 179.97438 * 3 2 1 5 5 C 1.35321 * 125.86630 * 124.97830 * 4 3 2 6 6 C 1.35346 * 106.17575 * 179.97438 * 5 4 3 7 7 C 1.50699 * 126.75053 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47457 * 94.99796 * 7 6 5 9 9 C 1.36933 * 120.00036 * 89.99890 * 8 7 6 10 10 H 1.08004 * 119.99968 * 326.06055 * 9 8 7 11 11 C 1.38812 * 119.99979 * 146.05722 * 9 8 7 12 12 N 1.31619 * 120.00051 * 336.75771 * 11 9 8 13 13 Si 1.86799 * 119.99805 * 156.75212 * 11 9 8 14 14 H 1.48500 * 109.47048 * 90.00309 * 13 11 9 15 15 H 1.48506 * 109.47306 * 210.00028 * 13 11 9 16 16 H 1.48498 * 109.47303 * 330.00166 * 13 11 9 17 17 C 1.46495 * 119.99753 * 269.99676 * 8 7 6 18 18 C 1.53004 * 109.46803 * 92.19887 * 17 8 7 19 19 O 1.42899 * 109.47013 * 64.99903 * 18 17 8 20 20 C 1.42909 * 113.99777 * 180.02562 * 19 18 17 21 21 N 1.33773 * 106.49780 * 359.97438 * 6 5 4 22 22 N 1.28638 * 108.88664 * 0.02562 * 21 6 5 23 23 H 1.08994 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46919 * 300.00131 * 1 2 3 25 25 H 1.09000 * 109.46687 * 59.99872 * 1 2 3 26 26 H 1.08998 * 109.46553 * 240.00152 * 2 1 3 27 27 H 1.09000 * 109.46687 * 120.00128 * 2 1 3 28 28 H 1.08999 * 109.46946 * 60.00606 * 3 2 1 29 29 H 1.08997 * 109.47198 * 299.99823 * 3 2 1 30 30 H 1.07995 * 126.90794 * 0.02562 * 5 4 3 31 31 H 1.09010 * 109.46847 * 214.99768 * 7 6 5 32 32 H 1.09001 * 109.46981 * 334.99349 * 7 6 5 33 33 H 0.96997 * 119.99985 * 179.97438 * 12 11 9 34 34 H 1.08995 * 109.46967 * 212.19384 * 17 8 7 35 35 H 1.09000 * 109.47519 * 332.19871 * 17 8 7 36 36 H 1.08997 * 109.46985 * 184.99926 * 18 17 8 37 37 H 1.09006 * 109.47383 * 304.99584 * 18 17 8 38 38 H 1.09004 * 109.46922 * 59.99949 * 20 19 18 39 39 H 1.08998 * 109.46881 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.46844 * 300.00201 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2982 2.0710 -0.8977 6 6 5.5724 1.8100 -0.5231 7 6 6.8285 2.2880 -1.2048 8 7 7.3011 3.5129 -0.5547 9 6 8.1747 3.4366 0.4970 10 1 8.1139 2.6110 1.1907 11 6 9.1386 4.4202 0.6714 12 7 9.5301 5.1471 -0.3536 13 14 9.8797 4.7123 2.3610 14 1 11.0805 3.8550 2.5297 15 1 10.2684 6.1397 2.4911 16 1 8.8797 4.3744 3.4055 17 6 6.8391 4.8194 -1.0299 18 6 5.5989 5.2403 -0.2388 19 8 5.9529 5.4398 1.1312 20 6 4.8600 5.8369 1.9620 21 7 5.4974 1.0452 0.5719 22 7 4.2588 0.8454 0.8562 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.9788 2.6625 -1.7429 31 1 7.5969 1.5182 -1.1319 32 1 6.6171 2.4921 -2.2545 33 1 10.2033 5.8346 -0.2316 34 1 7.6284 5.5575 -0.8879 35 1 6.5895 4.7534 -2.0888 36 1 5.2031 6.1686 -0.6506 37 1 4.8412 4.4597 -0.3084 38 1 4.0874 5.0683 1.9380 39 1 5.2106 5.9673 2.9858 40 1 4.4484 6.7774 1.5959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877579536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:46 Heat of formation + Delta-G solvation = 51.710082 kcal Electronic energy + Delta-G solvation = -21416.292106 eV Core-core repulsion = 18268.697583 eV Total energy + Delta-G solvation = -3147.594522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.00407 -38.85376 -37.32024 -36.64642 -33.81894 -33.23749 -32.02536 -30.40151 -27.97787 -27.46341 -27.14342 -24.88754 -23.51591 -22.75710 -22.21944 -21.24591 -18.61386 -18.13610 -17.50911 -17.09185 -16.68701 -16.39943 -16.03018 -15.73513 -15.62350 -15.38954 -14.88091 -14.66262 -14.35341 -13.44366 -13.40027 -13.36474 -13.02964 -12.90752 -12.72880 -12.56058 -12.46649 -12.31779 -12.26282 -11.95677 -11.92901 -11.81342 -11.51413 -11.41834 -10.80827 -10.49752 -10.33926 -9.88666 -8.51877 -7.71614 -5.25400 0.81278 1.44604 1.46996 1.58849 1.64051 1.77600 2.62743 3.22331 3.38757 3.55593 3.71810 3.84613 3.86679 4.14094 4.24934 4.31448 4.35805 4.43236 4.46103 4.47395 4.59785 4.68429 4.74047 4.76997 4.82514 4.90804 5.00326 5.08927 5.12477 5.17443 5.22854 5.35564 5.43020 5.79747 5.88616 5.91559 6.50372 6.70939 7.29989 7.75490 7.99069 8.43803 9.24798 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.005474 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.138066 B = 5114.170384 C = 5342.162782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.107 3.893 4 N -0.287 5.287 5 C -0.042 4.042 6 C -0.030 4.030 7 C 0.219 3.781 8 N -0.578 5.578 9 C -0.227 4.227 10 H 0.032 0.968 11 C -0.020 4.020 12 N -0.914 5.914 13 Si 0.939 3.061 14 H -0.287 1.287 15 H -0.289 1.289 16 H -0.291 1.291 17 C 0.133 3.867 18 C 0.053 3.947 19 O -0.398 6.398 20 C 0.031 3.969 21 N -0.309 5.309 22 N -0.127 5.127 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.223 0.777 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.248 0.752 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.039 0.961 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.724 -2.984 -4.836 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.012 4.012 4 N -0.082 5.082 5 C -0.193 4.193 6 C -0.172 4.172 7 C 0.091 3.909 8 N -0.297 5.297 9 C -0.357 4.357 10 H 0.050 0.950 11 C -0.217 4.217 12 N -0.560 5.560 13 Si 0.769 3.231 14 H -0.214 1.214 15 H -0.215 1.215 16 H -0.217 1.217 17 C 0.007 3.993 18 C -0.025 4.025 19 O -0.317 6.317 20 C -0.066 4.066 21 N -0.175 5.175 22 N -0.105 5.105 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.157 0.843 30 H 0.239 0.761 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.390 -3.779 -3.505 21.032 hybrid contribution 0.273 0.885 0.353 0.991 sum -20.117 -2.895 -3.152 20.567 Atomic orbital electron populations 1.21668 0.91880 1.03176 1.03283 1.21752 0.98422 0.94031 1.02745 1.22590 0.70825 1.00793 1.07015 1.47725 1.10071 1.32512 1.17844 1.23766 0.89893 1.05099 1.00576 1.23517 0.98079 0.99852 0.95782 1.19243 0.88913 0.88729 0.94014 1.43767 1.49125 1.00227 1.36563 1.18777 1.06969 1.08377 1.01606 0.95007 1.25238 0.97063 1.00810 0.98555 1.70024 1.31638 1.25323 1.28975 0.85737 0.77677 0.76649 0.83032 1.21411 1.21518 1.21750 1.21167 0.94762 0.89190 0.94133 1.23334 0.99184 0.97793 0.82189 1.88177 1.33896 1.89061 1.20518 1.22719 0.90125 0.98257 0.95458 1.75018 1.09990 1.17397 1.15096 1.78087 0.96731 1.19398 1.16330 0.91576 0.91677 0.90644 0.91691 0.92458 0.88032 0.84315 0.76060 0.93759 0.89280 0.94261 0.90866 0.91255 0.93401 0.94297 0.95230 0.90784 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.91 71.99 0.71 -0.57 16 2 C -0.13 -1.98 6.06 30.60 0.19 -1.79 16 3 C 0.11 1.71 6.46 86.38 0.56 2.26 16 4 N -0.29 -8.03 3.44 -347.74 -1.20 -9.22 16 5 C -0.04 -1.19 9.98 83.49 0.83 -0.36 16 6 C -0.03 -1.19 6.53 41.59 0.27 -0.92 16 7 C 0.22 9.17 6.27 85.63 0.54 9.70 16 8 N -0.58 -28.63 2.43 -706.33 -1.71 -30.34 16 9 C -0.23 -13.17 8.87 84.03 0.75 -12.43 16 10 H 0.03 2.02 7.93 -2.91 -0.02 1.99 16 11 C -0.02 -1.19 4.96 84.86 0.42 -0.77 16 12 N -0.91 -54.08 11.30 21.65 0.24 -53.84 16 13 Si 0.94 49.06 29.61 68.60 2.03 51.09 16 14 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 15 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 16 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16 17 C 0.13 5.98 5.80 86.38 0.50 6.48 16 18 C 0.05 2.09 6.28 71.98 0.45 2.54 16 19 O -0.40 -18.24 10.07 -148.98 -1.50 -19.74 16 20 C 0.03 1.08 11.01 113.37 1.25 2.33 16 21 N -0.31 -13.86 12.41 -48.60 -0.60 -14.46 16 22 N -0.13 -4.84 12.92 37.02 0.48 -4.36 16 23 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.14 1.16 8.07 -2.39 -0.02 1.14 16 30 H 0.22 4.16 8.06 -2.91 -0.02 4.13 16 31 H 0.04 2.02 8.04 -2.38 -0.02 2.00 16 32 H 0.09 3.02 7.88 -2.39 -0.02 3.00 16 33 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.07 3.92 5.31 -2.39 -0.01 3.91 16 35 H 0.07 2.62 7.87 -2.39 -0.02 2.60 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.04 1.40 6.19 -2.38 -0.01 1.38 16 38 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -77.24 334.69 5.21 -72.03 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.01 Total: 2.37 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.47 Total: 6.48 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -2.79 Total: -112.22 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -1.50 Total: -19.74 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.03 Total: 51.09 kcal Total: -77.24 5.21 -72.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877579536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.739 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds