Wall clock time and date at job start Mon Mar 30 2020 01:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00015 * 2 1 4 4 H 1.48497 * 109.46946 * 239.99823 * 3 2 1 5 5 H 1.48499 * 109.47248 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46688 * 120.00241 * 3 2 1 7 7 C 1.37881 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46876 * 180.02562 * 9 7 2 11 11 N 1.50245 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.49734 * 105.83882 * 184.31999 * 11 10 9 13 13 C 1.52329 * 110.97461 * 73.07222 * 12 11 10 14 14 C 1.53254 * 109.01172 * 206.73518 * 13 12 11 15 15 C 1.52912 * 110.19518 * 48.50043 * 14 13 12 16 16 C 1.52990 * 109.57857 * 259.56693 * 15 14 13 17 17 C 1.52849 * 110.49037 * 149.42677 * 16 15 14 18 18 N 1.47198 * 109.83385 * 302.23476 * 17 16 15 19 19 C 1.35931 * 117.89381 * 283.43049 * 18 17 16 20 20 O 1.21256 * 120.68941 * 352.89017 * 19 18 17 21 21 C 1.50637 * 119.10837 * 173.19707 * 19 18 17 22 22 C 1.49481 * 106.04066 * 73.26152 * 11 10 9 23 23 H 0.96999 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47195 * 60.00032 * 9 7 2 25 25 H 1.08996 * 109.46872 * 299.99643 * 9 7 2 26 26 H 1.09001 * 109.47715 * 59.99502 * 10 9 7 27 27 H 1.09001 * 109.47061 * 299.99723 * 10 9 7 28 28 H 1.07808 * 108.27083 * 313.51135 * 12 11 10 29 29 H 1.08788 * 108.13034 * 193.80820 * 12 11 10 30 30 H 1.09476 * 109.56908 * 87.96780 * 13 12 11 31 31 H 1.08710 * 111.43380 * 327.16406 * 13 12 11 32 32 H 1.09035 * 109.37050 * 287.98670 * 14 13 12 33 33 H 1.08996 * 109.27512 * 168.68032 * 14 13 12 34 34 H 1.09391 * 108.89717 * 140.38674 * 15 14 13 35 35 H 1.08660 * 110.24363 * 21.32405 * 15 14 13 36 36 H 1.09277 * 109.13396 * 269.52903 * 16 15 14 37 37 H 1.08935 * 109.54017 * 28.60372 * 16 15 14 38 38 H 1.09390 * 109.39932 * 62.32866 * 17 16 15 39 39 H 1.09046 * 109.50484 * 181.18958 * 17 16 15 40 40 H 0.97384 * 121.08100 * 102.54788 * 18 17 16 41 41 H 1.11370 * 106.33148 * 133.10118 * 21 19 18 42 42 H 1.08340 * 110.86872 * 19.67439 * 21 19 18 43 43 H 1.09456 * 107.04432 * 162.24842 * 22 11 10 44 44 H 1.09490 * 107.36635 * 278.17716 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 7 1.4940 -4.9632 -0.0032 12 6 2.5335 -6.0354 0.1056 13 6 3.1185 -6.0869 1.5111 14 6 4.5414 -6.6518 1.4392 15 6 5.3377 -5.9387 0.3458 16 6 5.3818 -6.8127 -0.9090 17 6 5.4546 -5.9435 -2.1642 18 7 4.2990 -5.0329 -2.2088 19 6 3.0969 -5.5485 -2.5787 20 8 3.0107 -6.6880 -2.9841 21 6 1.8681 -4.6823 -2.4856 22 6 0.9306 -5.1130 -1.3797 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5574 0.8880 26 1 2.8713 -3.6047 0.8890 27 1 2.8725 -3.6039 -0.8910 28 1 3.3225 -5.8135 -0.5947 29 1 2.0653 -6.9868 -0.1378 30 1 2.5108 -6.7481 2.1373 31 1 3.1510 -5.0994 1.9644 32 1 4.4962 -7.7191 1.2211 33 1 5.0355 -6.5055 2.3997 34 1 6.3589 -5.7737 0.7017 35 1 4.8888 -4.9749 0.1215 36 1 6.2635 -7.4569 -0.8660 37 1 4.4907 -7.4380 -0.9490 38 1 6.3784 -5.3579 -2.1475 39 1 5.4640 -6.5813 -3.0487 40 1 4.3896 -4.0935 -1.9683 41 1 1.3240 -4.8060 -3.4494 42 1 2.1370 -3.6333 -2.4512 43 1 0.6639 -6.1673 -1.5042 44 1 0.0106 -4.5211 -1.4225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879254970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:09 Heat of formation + Delta-G solvation = -35.909768 kcal Electronic energy + Delta-G solvation = -22597.792770 eV Core-core repulsion = 19549.939110 eV Total energy + Delta-G solvation = -3047.853660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48755 -37.45238 -36.48438 -34.30117 -33.08864 -30.87727 -30.60480 -29.53935 -26.28081 -25.03865 -24.68571 -22.00784 -21.55020 -20.68190 -19.69357 -19.22527 -17.09715 -16.42267 -16.16708 -16.07902 -15.19646 -14.82993 -14.49982 -14.17919 -13.99903 -13.77568 -13.27821 -12.95806 -12.68019 -12.49355 -12.18779 -12.03230 -11.86019 -11.62010 -11.38967 -11.19448 -10.96992 -10.90537 -10.72053 -10.64125 -10.42610 -10.34474 -10.27537 -9.78571 -9.56561 -9.37269 -9.15713 -9.03759 -8.37195 -8.04733 -6.03186 -4.06493 2.69848 3.28857 3.32518 3.34848 3.35677 4.38120 4.55611 4.68257 4.89632 4.93062 5.03422 5.16430 5.24203 5.30194 5.32751 5.40323 5.50328 5.54616 5.66987 5.71651 5.81527 5.87062 5.93462 5.99038 6.04297 6.10544 6.19017 6.23595 6.32549 6.34458 6.43797 6.48008 6.51310 6.52890 6.95931 7.20110 7.28120 7.55549 7.68639 7.84707 8.02820 8.27765 8.37716 9.01012 9.57613 11.07816 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.005816 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.496684 B = 4812.766992 C = 4939.605441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.029 3.971 10 C 0.021 3.979 11 N -0.467 5.467 12 C -0.013 4.013 13 C -0.114 4.114 14 C -0.119 4.119 15 C -0.123 4.123 16 C -0.140 4.140 17 C 0.112 3.888 18 N -0.740 5.740 19 C 0.530 3.470 20 O -0.544 6.544 21 C -0.174 4.174 22 C 0.036 3.964 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.410 0.590 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 -11.434 -2.202 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.070 0.930 9 C -0.008 4.008 10 C -0.106 4.106 11 N -0.189 5.189 12 C -0.142 4.142 13 C -0.151 4.151 14 C -0.157 4.157 15 C -0.160 4.160 16 C -0.179 4.179 17 C -0.012 4.012 18 N -0.395 5.395 19 C 0.319 3.681 20 O -0.421 6.421 21 C -0.216 4.216 22 C -0.093 4.093 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.247 0.753 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.086 0.914 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.178 -12.165 -2.012 15.371 hybrid contribution 1.169 1.507 -0.506 1.973 sum 10.346 -10.659 -2.518 15.066 Atomic orbital electron populations 1.69952 1.06005 1.26709 1.50287 1.24977 0.94779 0.99067 0.95292 0.86713 0.79634 0.83417 0.78533 1.20332 1.21284 1.20283 1.21132 0.92801 0.91085 1.51304 0.92951 1.19025 0.93951 0.89962 0.97887 1.23510 0.97621 0.90041 0.99414 1.69421 1.24414 1.03071 1.22019 1.23394 0.96314 0.96447 0.98002 1.21495 0.94750 1.01964 0.96938 1.21688 0.95901 0.99680 0.98438 1.21636 0.99925 0.99655 0.94825 1.22113 1.02840 0.98535 0.94399 1.21471 0.88136 0.93220 0.98344 1.46811 1.08895 1.13448 1.70395 1.20876 0.84885 0.87625 0.74713 1.90664 1.86226 1.19305 1.45887 1.22044 0.95326 1.01489 1.02734 1.22476 0.97965 1.01687 0.87219 0.92906 0.96437 0.95863 0.92080 0.94696 0.90597 0.92124 0.92344 0.90900 0.92361 0.92294 0.92626 0.90945 0.91441 0.90952 0.90580 0.90729 0.75261 0.89031 0.87833 0.91352 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.95 9.11 -34.44 -0.31 -14.27 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 9 C 0.03 0.71 4.96 -27.88 -0.14 0.57 16 10 C 0.02 0.41 3.95 -1.95 -0.01 0.40 16 11 N -0.47 -8.28 6.00 -228.62 -1.37 -9.66 16 12 C -0.01 -0.20 3.29 -2.58 -0.01 -0.21 16 13 C -0.11 -1.60 5.70 -26.94 -0.15 -1.75 16 14 C -0.12 -1.39 5.76 -26.65 -0.15 -1.54 16 15 C -0.12 -1.37 4.96 -26.78 -0.13 -1.51 16 16 C -0.14 -1.52 4.82 -26.81 -0.13 -1.65 16 17 C 0.11 1.21 6.07 -3.74 -0.02 1.19 16 18 N -0.74 -9.26 3.41 -59.46 -0.20 -9.47 16 19 C 0.53 7.97 4.43 -10.49 -0.05 7.92 16 20 O -0.54 -9.58 16.44 5.58 0.09 -9.49 16 21 C -0.17 -2.65 4.64 -28.80 -0.13 -2.78 16 22 C 0.04 0.59 4.93 -3.27 -0.02 0.58 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.02 0.45 7.02 -51.93 -0.36 0.08 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.20 6.34 -51.93 -0.33 0.87 16 27 H 0.03 0.61 3.31 -51.93 -0.17 0.44 16 28 H 0.08 1.08 0.37 -52.59 -0.02 1.06 16 29 H 0.06 0.98 7.62 -52.05 -0.40 0.58 16 30 H 0.06 0.80 8.18 -51.66 -0.42 0.38 16 31 H 0.07 1.13 6.39 -52.09 -0.33 0.80 16 32 H 0.06 0.65 7.57 -51.91 -0.39 0.26 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.55 8.17 -51.71 -0.42 0.13 16 35 H 0.07 0.91 6.03 -52.12 -0.31 0.60 16 36 H 0.07 0.62 8.17 -51.77 -0.42 0.19 16 37 H 0.07 0.95 6.29 -51.97 -0.33 0.63 16 38 H 0.08 0.64 8.17 -51.71 -0.42 0.22 16 39 H 0.07 0.86 7.73 -51.90 -0.40 0.46 16 40 H 0.41 4.88 7.41 -40.67 -0.30 4.57 16 41 H 0.09 1.28 8.31 -50.56 -0.42 0.86 16 42 H 0.10 1.64 6.47 -52.30 -0.34 1.30 16 43 H 0.07 1.09 7.60 -51.67 -0.39 0.70 16 44 H 0.09 1.60 7.44 -51.65 -0.38 1.21 16 LS Contribution 318.99 15.07 4.81 4.81 Total: -1.00 -30.14 318.99 -9.28 -39.42 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.96 Total: 5.27 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.35 Total: -11.47 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.84 Total: -44.38 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.14 -9.28 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879254970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.506 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds