Wall clock time and date at job start Mon Mar 30 2020 01:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00015 * 2 1 4 4 H 1.48497 * 109.46946 * 239.99823 * 3 2 1 5 5 H 1.48499 * 109.47248 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46688 * 120.00241 * 3 2 1 7 7 C 1.37881 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46876 * 180.02562 * 9 7 2 11 11 N 1.50245 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.49734 * 105.83882 * 184.31999 * 11 10 9 13 13 C 1.52329 * 110.97461 * 73.07222 * 12 11 10 14 14 C 1.53254 * 109.01172 * 206.73518 * 13 12 11 15 15 C 1.52912 * 110.19518 * 48.50043 * 14 13 12 16 16 C 1.52990 * 109.57857 * 259.56693 * 15 14 13 17 17 C 1.52849 * 110.49037 * 149.42677 * 16 15 14 18 18 N 1.47198 * 109.83385 * 302.23476 * 17 16 15 19 19 C 1.35931 * 117.89381 * 283.43049 * 18 17 16 20 20 O 1.21256 * 120.68941 * 352.89017 * 19 18 17 21 21 C 1.50637 * 119.10837 * 173.19707 * 19 18 17 22 22 C 1.49481 * 106.04066 * 73.26152 * 11 10 9 23 23 H 0.96999 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47195 * 60.00032 * 9 7 2 25 25 H 1.08996 * 109.46872 * 299.99643 * 9 7 2 26 26 H 1.09001 * 109.47715 * 59.99502 * 10 9 7 27 27 H 1.09001 * 109.47061 * 299.99723 * 10 9 7 28 28 H 1.07808 * 108.27083 * 313.51135 * 12 11 10 29 29 H 1.08788 * 108.13034 * 193.80820 * 12 11 10 30 30 H 1.09476 * 109.56908 * 87.96780 * 13 12 11 31 31 H 1.08710 * 111.43380 * 327.16406 * 13 12 11 32 32 H 1.09035 * 109.37050 * 287.98670 * 14 13 12 33 33 H 1.08996 * 109.27512 * 168.68032 * 14 13 12 34 34 H 1.09391 * 108.89717 * 140.38674 * 15 14 13 35 35 H 1.08660 * 110.24363 * 21.32405 * 15 14 13 36 36 H 1.09277 * 109.13396 * 269.52903 * 16 15 14 37 37 H 1.08935 * 109.54017 * 28.60372 * 16 15 14 38 38 H 1.09390 * 109.39932 * 62.32866 * 17 16 15 39 39 H 1.09046 * 109.50484 * 181.18958 * 17 16 15 40 40 H 0.97384 * 121.08100 * 102.54788 * 18 17 16 41 41 H 1.11370 * 106.33148 * 133.10118 * 21 19 18 42 42 H 1.08340 * 110.86872 * 19.67439 * 21 19 18 43 43 H 1.09456 * 107.04432 * 162.24842 * 22 11 10 44 44 H 1.09490 * 107.36635 * 278.17716 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 7 1.4940 -4.9632 -0.0032 12 6 2.5335 -6.0354 0.1056 13 6 3.1185 -6.0869 1.5111 14 6 4.5414 -6.6518 1.4392 15 6 5.3377 -5.9387 0.3458 16 6 5.3818 -6.8127 -0.9090 17 6 5.4546 -5.9435 -2.1642 18 7 4.2990 -5.0329 -2.2088 19 6 3.0969 -5.5485 -2.5787 20 8 3.0107 -6.6880 -2.9841 21 6 1.8681 -4.6823 -2.4856 22 6 0.9306 -5.1130 -1.3797 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5574 0.8880 26 1 2.8713 -3.6047 0.8890 27 1 2.8725 -3.6039 -0.8910 28 1 3.3225 -5.8135 -0.5947 29 1 2.0653 -6.9868 -0.1378 30 1 2.5108 -6.7481 2.1373 31 1 3.1510 -5.0994 1.9644 32 1 4.4962 -7.7191 1.2211 33 1 5.0355 -6.5055 2.3997 34 1 6.3589 -5.7737 0.7017 35 1 4.8888 -4.9749 0.1215 36 1 6.2635 -7.4569 -0.8660 37 1 4.4907 -7.4380 -0.9490 38 1 6.3784 -5.3579 -2.1475 39 1 5.4640 -6.5813 -3.0487 40 1 4.3896 -4.0935 -1.9683 41 1 1.3240 -4.8060 -3.4494 42 1 2.1370 -3.6333 -2.4512 43 1 0.6639 -6.1673 -1.5042 44 1 0.0106 -4.5211 -1.4225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879254970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:08 Heat of formation + Delta-G solvation = -56.576575 kcal Electronic energy + Delta-G solvation = -22598.688950 eV Core-core repulsion = 19549.939110 eV Total energy + Delta-G solvation = -3048.749840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.69436 -38.76341 -37.58276 -35.49270 -35.02991 -32.19369 -31.91275 -31.08023 -27.58166 -26.36740 -26.17152 -23.61716 -22.62237 -21.89988 -20.82524 -20.57323 -18.56779 -18.11415 -17.32915 -17.30484 -16.66143 -16.28065 -15.97775 -15.44297 -15.29079 -14.83218 -14.50073 -14.16731 -13.95661 -13.93162 -13.85250 -13.45991 -13.17265 -12.91066 -12.83233 -12.69488 -12.42745 -12.31168 -12.11328 -11.86628 -11.80315 -11.50866 -11.41172 -11.24588 -11.14619 -11.07486 -10.83610 -10.47332 -10.17343 -9.39754 -8.13896 -6.24647 1.44205 1.46304 1.48984 1.53771 2.26425 2.44243 3.19693 3.20344 3.63513 3.84338 3.93733 4.03241 4.06732 4.11459 4.13906 4.33044 4.37862 4.47633 4.53680 4.61486 4.65766 4.77712 4.80593 4.87863 4.90698 4.93372 4.99984 5.01093 5.12218 5.17945 5.26459 5.31511 5.38481 5.51688 5.53309 5.55502 5.64192 5.81496 5.97274 6.03624 6.31516 6.46839 6.93330 7.13273 7.44616 8.97785 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.005816 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.496684 B = 4812.766992 C = 4939.605441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.038 3.962 10 C 0.040 3.960 11 N -0.485 5.485 12 C -0.009 4.009 13 C -0.114 4.114 14 C -0.115 4.115 15 C -0.122 4.122 16 C -0.136 4.136 17 C 0.108 3.892 18 N -0.731 5.731 19 C 0.532 3.468 20 O -0.570 6.570 21 C -0.174 4.174 22 C 0.039 3.961 23 H 0.261 0.739 24 H -0.001 1.001 25 H -0.018 1.018 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.415 0.585 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.707 -11.428 -2.411 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.000 4.000 10 C -0.087 4.087 11 N -0.208 5.208 12 C -0.137 4.137 13 C -0.152 4.152 14 C -0.153 4.153 15 C -0.160 4.160 16 C -0.175 4.175 17 C -0.015 4.015 18 N -0.386 5.386 19 C 0.321 3.679 20 O -0.449 6.449 21 C -0.216 4.216 22 C -0.091 4.091 23 H 0.070 0.930 24 H 0.017 0.983 25 H 0.001 0.999 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.253 0.747 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.045 -12.162 -2.214 17.260 hybrid contribution 0.249 1.451 -0.426 1.533 sum 12.295 -10.710 -2.640 16.518 Atomic orbital electron populations 1.70107 1.07869 1.27594 1.51686 1.25901 0.95564 1.03083 0.94931 0.85594 0.78286 0.78492 0.79226 1.18756 1.21543 1.19404 1.21591 0.93646 0.91890 1.50383 0.91559 1.18849 0.94207 0.91921 0.94976 1.23175 0.96249 0.89060 1.00239 1.69355 1.25357 1.03020 1.23034 1.23436 0.95922 0.94994 0.99394 1.21494 0.96623 1.01277 0.95823 1.21665 0.94170 0.99920 0.99519 1.21625 1.00866 0.98729 0.94748 1.22077 1.02780 0.98422 0.94180 1.21678 0.88384 0.93344 0.98105 1.46796 1.08732 1.13957 1.69087 1.20728 0.85437 0.87050 0.74661 1.90657 1.86651 1.20282 1.47322 1.21962 0.95767 1.01078 1.02744 1.22421 0.97762 1.01665 0.87226 0.93005 0.98302 0.99938 0.92240 0.92669 0.89226 0.92883 0.92383 0.92450 0.91709 0.90960 0.90482 0.92437 0.89060 0.93434 0.87401 0.91316 0.74709 0.87791 0.88419 0.90865 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -28.59 9.11 25.60 0.23 -28.35 16 8 H 0.07 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.04 1.91 4.96 29.85 0.15 2.06 16 10 C 0.04 1.56 3.95 85.65 0.34 1.89 16 11 N -0.49 -17.49 6.00 -877.23 -5.26 -22.75 16 12 C -0.01 -0.28 3.29 85.53 0.28 0.00 16 13 C -0.11 -3.13 5.70 30.46 0.17 -2.95 16 14 C -0.11 -2.41 5.76 30.65 0.18 -2.24 16 15 C -0.12 -2.37 4.96 30.56 0.15 -2.21 16 16 C -0.14 -2.57 4.82 30.54 0.15 -2.42 16 17 C 0.11 2.02 6.07 86.20 0.52 2.54 16 18 N -0.73 -16.84 3.41 -459.78 -1.57 -18.41 16 19 C 0.53 15.44 4.43 87.45 0.39 15.83 16 20 O -0.57 -19.58 16.44 -2.96 -0.05 -19.63 16 21 C -0.17 -5.24 4.64 29.25 0.14 -5.11 16 22 C 0.04 1.30 4.93 85.22 0.42 1.72 16 23 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 24 H 0.00 -0.07 7.02 -2.39 -0.02 -0.09 16 25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H 0.06 2.32 6.34 -2.39 -0.02 2.30 16 27 H 0.06 1.89 3.31 -2.39 -0.01 1.88 16 28 H 0.09 2.46 0.37 -3.01 0.00 2.46 16 29 H 0.05 1.70 7.62 -2.50 -0.02 1.68 16 30 H 0.06 1.56 8.18 -2.13 -0.02 1.54 16 31 H 0.06 1.75 6.39 -2.54 -0.02 1.74 16 32 H 0.06 1.30 7.57 -2.37 -0.02 1.28 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.20 8.17 -2.18 -0.02 1.19 16 35 H 0.06 1.30 6.03 -2.57 -0.02 1.28 16 36 H 0.09 1.32 8.17 -2.24 -0.02 1.30 16 37 H 0.05 1.16 6.29 -2.42 -0.02 1.14 16 38 H 0.11 1.37 8.17 -2.18 -0.02 1.36 16 39 H 0.07 1.41 7.73 -2.36 -0.02 1.39 16 40 H 0.41 8.89 7.41 -92.42 -0.68 8.21 16 41 H 0.10 2.86 8.31 -1.10 -0.01 2.86 16 42 H 0.10 3.06 6.47 -2.73 -0.02 3.04 16 43 H 0.07 2.37 7.60 -2.14 -0.02 2.36 16 44 H 0.08 2.76 7.44 -2.13 -0.02 2.75 16 Total: -1.00 -65.51 318.99 -0.66 -66.16 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.33 Total: 24.08 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 3.58 Total: -18.60 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -6.54 Total: -96.44 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -65.51 -0.66 -66.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879254970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.588 kcal (2) G-P(sol) polarization free energy of solvation -65.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds