Wall clock time and date at job start Mon Mar 30 2020 01:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00418 * 2 1 4 4 H 1.48504 * 109.47333 * 270.00307 * 3 2 1 5 5 H 1.48508 * 109.46985 * 30.00030 * 3 2 1 6 6 H 1.48499 * 109.47385 * 149.99912 * 3 2 1 7 7 C 1.37881 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47244 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47063 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.47588 * 111.00126 * 296.15844 * 12 11 10 14 14 C 1.52155 * 107.41699 * 177.40201 * 13 12 11 15 15 H 1.08998 * 110.69956 * 302.22817 * 14 13 12 16 16 C 1.53141 * 114.44215 * 176.90249 * 14 13 12 17 17 C 1.55070 * 104.08721 * 215.17539 * 16 14 13 18 18 C 1.55278 * 104.91093 * 2.79738 * 17 16 14 19 19 N 1.46952 * 103.40293 * 24.07679 * 18 17 16 20 20 C 1.45635 * 117.16542 * 197.49876 * 19 18 17 21 21 C 1.46598 * 110.99783 * 170.00168 * 12 11 10 22 22 H 1.08997 * 109.12473 * 300.24808 * 21 12 11 23 23 C 1.52997 * 109.16530 * 59.47586 * 21 12 11 24 24 O 1.42898 * 109.47319 * 66.54325 * 23 21 12 25 25 H 0.97005 * 119.99692 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47184 * 59.99417 * 9 7 2 27 27 H 1.09002 * 109.46616 * 300.00071 * 9 7 2 28 28 H 1.08996 * 109.46881 * 60.00182 * 10 9 7 29 29 H 1.08999 * 109.47009 * 299.99717 * 10 9 7 30 30 H 1.09000 * 109.46654 * 60.00016 * 11 10 9 31 31 H 1.08995 * 109.47142 * 300.00595 * 11 10 9 32 32 H 1.08997 * 109.86997 * 57.92091 * 13 12 11 33 33 H 1.09004 * 109.92720 * 296.90384 * 13 12 11 34 34 H 1.09000 * 110.50655 * 333.82943 * 16 14 13 35 35 H 1.09002 * 110.50640 * 96.39326 * 16 14 13 36 36 H 1.09001 * 110.34768 * 121.65303 * 17 16 14 37 37 H 1.08996 * 110.35608 * 243.83107 * 17 16 14 38 38 H 1.08998 * 110.63800 * 265.59595 * 18 17 16 39 39 H 1.09002 * 110.63584 * 142.54892 * 18 17 16 40 40 H 1.08997 * 109.85355 * 61.02602 * 20 19 18 41 41 H 1.09006 * 109.89991 * 300.06639 * 20 19 18 42 42 H 1.09002 * 109.47153 * 306.54018 * 23 21 12 43 43 H 1.09001 * 109.46832 * 186.54209 * 23 21 12 44 44 H 0.96701 * 113.99881 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4346 -6.1037 0.0006 13 6 3.2391 -6.1111 -1.2367 14 6 4.2383 -7.2530 -1.1235 15 1 4.8617 -7.1330 -0.2375 16 6 5.1132 -7.4548 -2.3640 17 6 5.3085 -8.9912 -2.4424 18 6 4.4632 -9.5616 -1.2713 19 7 3.4564 -8.5170 -1.0375 20 6 2.7493 -8.5480 0.2352 21 6 1.7516 -7.3788 0.2388 22 1 1.2495 -7.3398 1.2054 23 6 0.7103 -7.6037 -0.8594 24 8 1.3718 -7.7895 -2.1123 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8717 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.8531 -5.0451 -0.8886 31 1 0.8537 -5.0446 0.8913 32 1 3.7689 -5.1642 -1.3398 33 1 2.5921 -6.2694 -2.0996 34 1 4.6028 -7.0888 -3.2549 35 1 6.0724 -6.9518 -2.2408 36 1 4.9412 -9.3718 -3.3955 37 1 6.3600 -9.2469 -2.3126 38 1 5.0815 -9.7044 -0.3851 39 1 3.9854 -10.4971 -1.5624 40 1 3.4579 -8.4325 1.0554 41 1 2.2138 -9.4918 0.3392 42 1 0.0535 -6.7359 -0.9204 43 1 0.1207 -8.4899 -0.6249 44 1 0.7715 -7.9373 -2.8559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880069687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:23 Heat of formation + Delta-G solvation = -30.578304 kcal Electronic energy + Delta-G solvation = -21849.168799 eV Core-core repulsion = 18801.546328 eV Total energy + Delta-G solvation = -3047.622471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25166 -37.37981 -35.58071 -33.77889 -32.69162 -31.22033 -30.14045 -28.58130 -26.08732 -25.26367 -24.13288 -22.37159 -21.28491 -20.54858 -19.83643 -19.00280 -17.31312 -16.24337 -15.92433 -15.50496 -15.40137 -14.87324 -14.43206 -14.39529 -14.13098 -13.60892 -13.33676 -12.89898 -12.51199 -12.39434 -12.21410 -11.95375 -11.63668 -11.50775 -11.27766 -11.10507 -10.98403 -10.87267 -10.77051 -10.60104 -10.48443 -10.36834 -10.27371 -9.70556 -9.39003 -9.27024 -9.00516 -8.30106 -8.14840 -7.75845 -5.95712 -3.97279 3.34959 3.40897 3.44964 4.00366 4.12484 4.50222 4.54482 4.63771 4.77942 4.96890 5.05826 5.22533 5.27049 5.40195 5.42794 5.46446 5.52506 5.53670 5.63177 5.72490 5.75706 5.84622 5.86742 5.89188 5.97365 6.05881 6.09326 6.20282 6.31510 6.41167 6.52263 6.80291 6.86304 7.04796 7.20159 7.32188 7.53829 7.55536 7.73680 7.86445 7.89341 8.05321 8.49261 9.09963 9.66453 11.15830 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.004110 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.526932 B = 6811.316844 C = 7347.751877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.060 3.940 12 N -0.541 5.541 13 C 0.066 3.934 14 C 0.069 3.931 15 H 0.048 0.952 16 C -0.113 4.113 17 C -0.117 4.117 18 C 0.042 3.958 19 N -0.496 5.496 20 C 0.069 3.931 21 C 0.092 3.908 22 H 0.091 0.909 23 C 0.048 3.952 24 O -0.525 6.525 25 H 0.259 0.741 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -20.480 -3.363 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.067 4.067 12 N -0.265 5.265 13 C -0.061 4.061 14 C -0.039 4.039 15 H 0.066 0.934 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.086 4.086 19 N -0.220 5.220 20 C -0.060 4.060 21 C -0.018 4.018 22 H 0.109 0.891 23 C -0.032 4.032 24 O -0.327 6.327 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.922 -20.279 -2.943 21.330 hybrid contribution -0.200 0.738 -0.176 0.785 sum 5.722 -19.541 -3.119 20.599 Atomic orbital electron populations 1.69968 1.06058 1.26478 1.51197 1.25022 0.94831 0.99212 0.95442 0.86609 0.79889 0.83535 0.78060 1.20712 1.21275 1.19865 1.21262 0.93043 0.91064 1.50116 0.92715 1.19068 0.94042 0.91446 0.96969 1.21648 0.99127 0.92738 1.00695 1.22235 0.93806 0.90833 0.99848 1.61816 1.25616 1.02021 1.37020 1.22207 0.95155 0.96704 0.92026 1.22367 0.93522 0.91016 0.96987 0.93410 1.22061 0.98980 0.95600 0.98489 1.22499 0.98764 0.95626 0.98617 1.22791 0.92977 0.95790 0.97032 1.63958 1.24850 1.01784 1.31439 1.21955 0.96284 0.97462 0.90290 1.21887 0.93144 0.89955 0.96792 0.89076 1.22841 0.95257 0.98645 0.86473 1.86992 1.34901 1.94699 1.16109 0.93098 0.96901 0.96711 0.92810 0.93405 0.95159 0.91681 0.90796 0.90698 0.90840 0.91676 0.91283 0.91965 0.95066 0.90870 0.94679 0.91013 0.93830 0.94666 0.80160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.10 -2.23 5.04 -26.73 -0.13 -2.37 16 11 C 0.06 1.07 4.25 -3.83 -0.02 1.06 16 12 N -0.54 -8.56 4.57 -226.41 -1.03 -9.59 16 13 C 0.07 1.02 4.51 -3.88 -0.02 1.00 16 14 C 0.07 0.93 2.61 -66.98 -0.17 0.76 16 15 H 0.05 0.70 8.01 -51.93 -0.42 0.28 16 16 C -0.11 -1.28 6.66 -25.56 -0.17 -1.45 16 17 C -0.12 -1.14 7.06 -24.43 -0.17 -1.31 16 18 C 0.04 0.45 6.74 -2.59 -0.02 0.43 16 19 N -0.50 -6.17 2.88 -224.54 -0.65 -6.82 16 20 C 0.07 0.84 5.44 -4.15 -0.02 0.82 16 21 C 0.09 1.22 2.93 -67.52 -0.20 1.02 16 22 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 23 C 0.05 0.59 6.36 37.16 0.24 0.82 16 24 O -0.52 -6.49 8.46 -35.23 -0.30 -6.79 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.02 6.45 -51.93 -0.34 0.69 16 30 H 0.03 0.56 6.69 -51.93 -0.35 0.21 16 31 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 32 H 0.07 1.23 6.35 -51.93 -0.33 0.90 16 33 H 0.08 1.21 5.55 -51.93 -0.29 0.92 16 34 H 0.07 0.86 8.02 -51.93 -0.42 0.45 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.58 6.24 -51.93 -0.32 0.26 16 43 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.35 3.21 9.12 45.56 0.42 3.63 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -31.19 329.28 -9.61 -40.79 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.07 Total: -0.41 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.24 Total: -12.50 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.95 Total: -43.03 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.30 Total: -6.79 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.19 -9.61 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880069687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.212 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds