Wall clock time and date at job start Mon Mar 30 2020 01:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00418 * 2 1 4 4 H 1.48504 * 109.47333 * 270.00307 * 3 2 1 5 5 H 1.48508 * 109.46985 * 30.00030 * 3 2 1 6 6 H 1.48499 * 109.47385 * 149.99912 * 3 2 1 7 7 C 1.37881 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47244 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47063 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.47588 * 111.00126 * 296.15844 * 12 11 10 14 14 C 1.52155 * 107.41699 * 177.40201 * 13 12 11 15 15 H 1.08998 * 110.69956 * 302.22817 * 14 13 12 16 16 C 1.53141 * 114.44215 * 176.90249 * 14 13 12 17 17 C 1.55070 * 104.08721 * 215.17539 * 16 14 13 18 18 C 1.55278 * 104.91093 * 2.79738 * 17 16 14 19 19 N 1.46952 * 103.40293 * 24.07679 * 18 17 16 20 20 C 1.45635 * 117.16542 * 197.49876 * 19 18 17 21 21 C 1.46598 * 110.99783 * 170.00168 * 12 11 10 22 22 H 1.08997 * 109.12473 * 300.24808 * 21 12 11 23 23 C 1.52997 * 109.16530 * 59.47586 * 21 12 11 24 24 O 1.42898 * 109.47319 * 66.54325 * 23 21 12 25 25 H 0.97005 * 119.99692 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47184 * 59.99417 * 9 7 2 27 27 H 1.09002 * 109.46616 * 300.00071 * 9 7 2 28 28 H 1.08996 * 109.46881 * 60.00182 * 10 9 7 29 29 H 1.08999 * 109.47009 * 299.99717 * 10 9 7 30 30 H 1.09000 * 109.46654 * 60.00016 * 11 10 9 31 31 H 1.08995 * 109.47142 * 300.00595 * 11 10 9 32 32 H 1.08997 * 109.86997 * 57.92091 * 13 12 11 33 33 H 1.09004 * 109.92720 * 296.90384 * 13 12 11 34 34 H 1.09000 * 110.50655 * 333.82943 * 16 14 13 35 35 H 1.09002 * 110.50640 * 96.39326 * 16 14 13 36 36 H 1.09001 * 110.34768 * 121.65303 * 17 16 14 37 37 H 1.08996 * 110.35608 * 243.83107 * 17 16 14 38 38 H 1.08998 * 110.63800 * 265.59595 * 18 17 16 39 39 H 1.09002 * 110.63584 * 142.54892 * 18 17 16 40 40 H 1.08997 * 109.85355 * 61.02602 * 20 19 18 41 41 H 1.09006 * 109.89991 * 300.06639 * 20 19 18 42 42 H 1.09002 * 109.47153 * 306.54018 * 23 21 12 43 43 H 1.09001 * 109.46832 * 186.54209 * 23 21 12 44 44 H 0.96701 * 113.99881 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4346 -6.1037 0.0006 13 6 3.2391 -6.1111 -1.2367 14 6 4.2383 -7.2530 -1.1235 15 1 4.8617 -7.1330 -0.2375 16 6 5.1132 -7.4548 -2.3640 17 6 5.3085 -8.9912 -2.4424 18 6 4.4632 -9.5616 -1.2713 19 7 3.4564 -8.5170 -1.0375 20 6 2.7493 -8.5480 0.2352 21 6 1.7516 -7.3788 0.2388 22 1 1.2495 -7.3398 1.2054 23 6 0.7103 -7.6037 -0.8594 24 8 1.3718 -7.7895 -2.1123 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8717 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.8531 -5.0451 -0.8886 31 1 0.8537 -5.0446 0.8913 32 1 3.7689 -5.1642 -1.3398 33 1 2.5921 -6.2694 -2.0996 34 1 4.6028 -7.0888 -3.2549 35 1 6.0724 -6.9518 -2.2408 36 1 4.9412 -9.3718 -3.3955 37 1 6.3600 -9.2469 -2.3126 38 1 5.0815 -9.7044 -0.3851 39 1 3.9854 -10.4971 -1.5624 40 1 3.4579 -8.4325 1.0554 41 1 2.2138 -9.4918 0.3392 42 1 0.0535 -6.7359 -0.9204 43 1 0.1207 -8.4899 -0.6249 44 1 0.7715 -7.9373 -2.8559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880069687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:22 Heat of formation + Delta-G solvation = -52.284436 kcal Electronic energy + Delta-G solvation = -21850.110048 eV Core-core repulsion = 18801.546328 eV Total energy + Delta-G solvation = -3048.563719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30724 -38.42958 -36.83950 -35.52520 -34.08859 -32.85011 -31.20036 -29.86021 -27.79271 -26.22401 -25.53611 -24.01477 -22.29851 -21.69892 -21.39401 -20.08827 -18.51455 -18.21946 -17.01901 -16.61045 -16.51552 -16.34701 -16.06826 -15.59446 -15.31712 -14.96633 -14.40031 -14.31716 -14.01564 -13.58080 -13.47787 -13.34741 -13.14367 -12.86852 -12.62117 -12.54086 -12.38257 -12.34200 -12.00903 -11.90050 -11.74753 -11.65710 -11.39617 -11.32827 -11.29275 -11.01258 -10.56884 -10.51391 -9.14775 -8.97645 -8.19995 -6.30859 1.39766 1.41335 1.52704 2.41092 2.87573 3.12769 3.13125 3.60033 3.70138 3.83953 4.04291 4.10500 4.13552 4.27480 4.35523 4.41012 4.50391 4.54885 4.58120 4.60263 4.72843 4.75981 4.79022 4.82825 4.89606 4.96554 5.00109 5.04682 5.10129 5.12251 5.22852 5.30488 5.35593 5.41306 5.52140 5.74890 5.85683 6.02752 6.13859 6.26722 6.34004 6.46032 6.85401 7.07130 7.38201 8.92005 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.004110 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.526932 B = 6811.316844 C = 7347.751877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.088 4.088 11 C 0.075 3.925 12 N -0.547 5.547 13 C 0.070 3.930 14 C 0.071 3.929 15 H 0.034 0.966 16 C -0.112 4.112 17 C -0.110 4.110 18 C 0.041 3.959 19 N -0.500 5.500 20 C 0.073 3.927 21 C 0.084 3.916 22 H 0.099 0.901 23 C 0.055 3.945 24 O -0.537 6.537 25 H 0.264 0.736 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.085 0.915 40 H 0.028 0.972 41 H 0.091 0.909 42 H 0.028 0.972 43 H 0.057 0.943 44 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -21.616 -3.656 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.126 4.126 11 C -0.053 4.053 12 N -0.271 5.271 13 C -0.058 4.058 14 C -0.037 4.037 15 H 0.052 0.948 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.086 4.086 19 N -0.225 5.225 20 C -0.056 4.056 21 C -0.025 4.025 22 H 0.117 0.883 23 C -0.025 4.025 24 O -0.342 6.342 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.011 0.989 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.103 0.897 40 H 0.047 0.953 41 H 0.109 0.891 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 7.016 -21.444 -3.246 22.794 hybrid contribution -0.577 1.053 -0.094 1.204 sum 6.439 -20.390 -3.340 21.642 Atomic orbital electron populations 1.70096 1.07770 1.27762 1.51728 1.25971 0.95782 1.03309 0.94669 0.85450 0.78662 0.78415 0.78547 1.19686 1.20557 1.18862 1.21674 0.93429 0.92444 1.50522 0.92501 1.18950 0.94320 0.93014 0.94659 1.21385 0.97958 0.92991 1.00256 1.21920 0.93538 0.90156 0.99648 1.61754 1.25348 1.02652 1.37351 1.22138 0.95288 0.96764 0.91564 1.22275 0.93128 0.90875 0.97443 0.94783 1.22064 0.98761 0.97146 0.97092 1.22490 0.99727 0.93992 0.98619 1.22872 0.92731 0.95614 0.97424 1.63951 1.25285 1.01754 1.31483 1.21944 0.95993 0.97626 0.90045 1.22049 0.93828 0.88934 0.97663 0.88346 1.22707 0.94619 0.98961 0.86223 1.86932 1.35871 1.94699 1.16681 0.92747 0.99235 0.98931 0.93370 0.93540 0.95719 0.91576 0.92761 0.91393 0.91476 0.90984 0.90663 0.90320 0.94817 0.89705 0.95337 0.89057 0.95366 0.92451 0.78435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.54 -31.98 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.09 -3.88 5.04 30.59 0.15 -3.73 16 11 C 0.07 2.74 4.25 86.30 0.37 3.11 16 12 N -0.55 -17.27 4.57 -870.21 -3.97 -21.24 16 13 C 0.07 2.15 4.51 85.89 0.39 2.54 16 14 C 0.07 1.86 2.61 44.30 0.12 1.97 16 15 H 0.03 0.98 8.01 -2.39 -0.02 0.96 16 16 C -0.11 -2.39 6.66 31.35 0.21 -2.18 16 17 C -0.11 -1.88 7.06 32.09 0.23 -1.65 16 18 C 0.04 0.77 6.74 87.08 0.59 1.36 16 19 N -0.50 -11.53 2.88 -864.31 -2.49 -14.02 16 20 C 0.07 1.64 5.44 86.78 0.47 2.12 16 21 C 0.08 2.14 2.93 45.21 0.13 2.27 16 22 H 0.10 2.34 8.11 -2.39 -0.02 2.32 16 23 C 0.05 1.26 6.36 71.98 0.46 1.72 16 24 O -0.54 -12.52 8.46 -148.98 -1.26 -13.78 16 25 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.05 2.04 6.45 -2.39 -0.02 2.03 16 30 H 0.02 0.93 6.69 -2.39 -0.02 0.91 16 31 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 32 H 0.05 1.85 6.35 -2.39 -0.02 1.83 16 33 H 0.07 2.20 5.55 -2.38 -0.01 2.19 16 34 H 0.07 1.51 8.02 -2.39 -0.02 1.49 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.03 0.69 8.02 -2.39 -0.02 0.67 16 41 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.03 0.74 6.24 -2.39 -0.01 0.72 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.37 6.12 9.12 -74.06 -0.68 5.44 16 Total: -1.00 -66.87 329.28 -1.18 -68.04 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.29 Total: 13.34 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 3.95 Total: -22.05 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -6.18 Total: -92.76 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -1.26 Total: -13.78 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.87 -1.18 -68.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880069687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.757 kcal (2) G-P(sol) polarization free energy of solvation -66.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds