Wall clock time and date at job start Mon Mar 30 2020 01:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48497 * 109.46953 * 269.99629 * 3 2 1 5 5 H 1.48492 * 109.47165 * 29.99575 * 3 2 1 6 6 H 1.48503 * 109.47259 * 149.99410 * 3 2 1 7 7 C 1.37883 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99745 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99891 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.46942 * 179.97438 * 9 7 2 11 11 C 1.46850 * 111.00121 * 66.05036 * 10 9 7 12 12 C 1.53028 * 109.52769 * 185.83886 * 11 10 9 13 13 C 1.53121 * 109.27681 * 300.81801 * 12 11 10 14 14 C 1.53119 * 109.16108 * 57.65337 * 13 12 11 15 15 H 1.09001 * 109.50063 * 62.32507 * 14 13 12 16 16 N 1.46902 * 109.50677 * 182.40370 * 14 13 12 17 17 C 1.46902 * 110.99776 * 273.28081 * 16 14 13 18 18 C 1.53178 * 109.54186 * 274.20401 * 17 16 14 19 19 C 1.53097 * 109.15920 * 183.15628 * 18 17 16 20 20 O 1.42901 * 109.41653 * 57.61234 * 19 18 17 21 21 C 1.42908 * 114.09486 * 298.83872 * 20 19 18 22 22 C 1.53089 * 109.41760 * 61.15843 * 21 20 19 23 23 C 1.46848 * 111.00039 * 190.25429 * 10 9 7 24 24 H 0.96998 * 120.00412 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46932 * 60.00440 * 9 7 2 26 26 H 1.08995 * 109.46953 * 300.00373 * 9 7 2 27 27 H 1.09002 * 109.46074 * 65.81743 * 11 10 9 28 28 H 1.09001 * 109.45191 * 305.84828 * 11 10 9 29 29 H 1.09000 * 109.50681 * 180.87810 * 12 11 10 30 30 H 1.09003 * 109.53795 * 60.77418 * 12 11 10 31 31 H 1.08996 * 109.52451 * 297.75086 * 13 12 11 32 32 H 1.08999 * 109.52647 * 177.55708 * 13 12 11 33 33 H 1.00898 * 110.99566 * 37.23317 * 16 14 13 34 34 H 1.09004 * 109.61830 * 34.43126 * 17 16 14 35 35 H 1.09002 * 109.52438 * 303.05776 * 18 17 16 36 36 H 1.08997 * 109.52242 * 63.25050 * 18 17 16 37 37 H 1.09000 * 109.47765 * 177.59059 * 19 18 17 38 38 H 1.09001 * 109.48283 * 297.62300 * 19 18 17 39 39 H 1.09000 * 109.48035 * 301.17335 * 21 20 19 40 40 H 1.09001 * 109.48200 * 181.14110 * 21 20 19 41 41 H 1.08993 * 109.52533 * 182.48322 * 22 21 20 42 42 H 1.09006 * 109.52080 * 62.29676 * 22 21 20 43 43 H 1.09005 * 109.45774 * 54.15141 * 23 10 9 44 44 H 1.08999 * 109.46644 * 294.18366 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5789 0.0022 11 6 3.6525 -3.2615 -1.2504 12 6 4.0477 -4.7369 -1.1561 13 6 5.5534 -4.8414 -0.8983 14 6 5.8973 -4.0817 0.3858 15 1 5.3839 -4.5424 1.2298 16 7 7.3484 -4.1284 0.6097 17 6 7.7286 -5.3410 1.3466 18 6 7.5903 -5.0906 2.8515 19 6 8.0632 -6.3317 3.6129 20 8 9.4139 -6.6255 3.2505 21 6 9.5959 -6.9147 1.8628 22 6 9.1846 -5.6971 1.0310 23 6 5.4484 -2.6253 0.2469 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8912 26 1 3.8752 -0.6803 -0.8888 27 1 4.1855 -2.7949 -2.0788 28 1 2.5785 -3.1833 -1.4195 29 1 3.8029 -5.2397 -2.0917 30 1 3.5047 -5.2081 -0.3368 31 1 6.0975 -4.4056 -1.7362 32 1 5.8321 -5.8893 -0.7873 33 1 7.8511 -4.0629 -0.2627 34 1 7.0797 -6.1662 1.0531 35 1 8.2015 -4.2340 3.1358 36 1 6.5464 -4.8907 3.0931 37 1 8.0073 -6.1435 4.6851 38 1 7.4261 -7.1788 3.3587 39 1 8.9789 -7.7695 1.5857 40 1 10.6441 -7.1465 1.6742 41 1 9.2809 -5.9309 -0.0292 42 1 9.8280 -4.8527 1.2786 43 1 5.6789 -2.0850 1.1651 44 1 5.9731 -2.1616 -0.5885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880210460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:29 Heat of formation + Delta-G solvation = -51.971003 kcal Electronic energy + Delta-G solvation = -21305.283795 eV Core-core repulsion = 18256.733668 eV Total energy + Delta-G solvation = -3048.550128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81151 -38.55399 -35.92885 -33.42102 -32.04452 -31.43086 -31.27355 -28.46596 -27.29813 -24.16556 -23.88359 -23.40317 -21.98316 -20.63705 -20.32630 -19.33888 -16.80984 -16.54365 -16.24186 -15.69937 -15.41209 -15.00894 -14.48523 -14.34286 -14.15885 -13.98009 -13.56392 -13.13284 -13.09472 -12.85513 -12.56448 -12.27037 -12.13555 -11.79771 -11.52294 -11.49793 -11.06018 -10.81791 -10.73964 -10.71952 -10.57030 -10.40323 -10.31786 -9.93610 -9.82857 -9.71639 -9.22986 -8.56836 -8.38806 -7.35251 -6.04603 -4.01745 3.29178 3.36970 3.39994 3.63439 3.92778 4.43102 4.47653 4.66585 4.76479 4.83986 4.97130 4.99963 5.06593 5.15170 5.19893 5.26417 5.28255 5.40061 5.41934 5.45036 5.61079 5.65916 5.77992 5.83991 5.85149 5.94072 6.06615 6.09997 6.14506 6.16201 6.27274 6.39201 6.61525 6.70075 6.88869 6.95444 6.99241 7.10392 7.37256 7.62657 7.93743 8.10179 8.67380 9.03644 9.57448 11.08493 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.003853 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.007246 B = 7264.855858 C = 7600.322280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.164 3.836 10 N -0.527 5.527 11 C 0.062 3.938 12 C -0.113 4.113 13 C -0.145 4.145 14 C 0.092 3.908 15 H 0.084 0.916 16 N -0.681 5.681 17 C 0.089 3.911 18 C -0.145 4.145 19 C 0.061 3.939 20 O -0.384 6.384 21 C 0.065 3.935 22 C -0.158 4.158 23 C 0.068 3.932 24 H 0.263 0.737 25 H 0.029 0.971 26 H -0.017 1.017 27 H 0.018 0.982 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.339 0.661 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.859 -13.404 1.143 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.038 3.962 10 N -0.252 5.252 11 C -0.066 4.066 12 C -0.151 4.151 13 C -0.184 4.184 14 C -0.017 4.017 15 H 0.102 0.898 16 N -0.311 5.311 17 C -0.021 4.021 18 C -0.183 4.183 19 C -0.017 4.017 20 O -0.303 6.303 21 C -0.013 4.013 22 C -0.196 4.196 23 C -0.061 4.061 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.000 1.000 27 H 0.036 0.964 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 17.596 -13.114 2.230 22.058 hybrid contribution 0.387 0.785 -1.694 1.907 sum 17.984 -12.329 0.536 21.811 Atomic orbital electron populations 1.69890 1.06118 1.26826 1.51180 1.24897 0.94732 0.98849 0.94863 0.86863 0.80418 0.84042 0.78446 1.20402 1.21147 1.19127 1.21043 0.88737 0.94693 1.50209 0.90140 1.20151 0.96990 0.84007 0.95072 1.61805 1.10540 1.18861 1.33971 1.21987 1.02255 0.92181 0.90168 1.21552 0.94592 0.97664 1.01322 1.22275 0.98058 0.99545 0.98514 1.21633 0.86608 0.96631 0.96865 0.89770 1.60505 1.06405 1.38351 1.25808 1.21490 0.94741 0.91340 0.94538 1.22238 1.02789 0.98905 0.94404 1.22635 0.82945 0.96199 0.99879 1.87925 1.27689 1.90097 1.24592 1.22521 1.01599 0.95647 0.81522 1.22403 0.97067 0.99908 1.00267 1.21932 0.89202 0.94554 1.00383 0.92682 0.95295 0.99958 0.96394 0.89256 0.92262 0.91294 0.92485 0.92914 0.84279 0.93744 0.90251 0.90569 0.88665 0.93366 0.93347 0.88867 0.91141 0.90071 0.90861 0.96183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.51 -14.48 8.99 -34.44 -0.31 -14.79 16 8 H 0.08 2.48 7.38 -52.49 -0.39 2.09 16 9 C 0.16 4.03 3.79 -4.98 -0.02 4.01 16 10 N -0.53 -11.03 4.65 -236.12 -1.10 -12.13 16 11 C 0.06 1.19 5.30 -3.84 -0.02 1.17 16 12 C -0.11 -1.69 6.09 -26.65 -0.16 -1.85 16 13 C -0.14 -1.88 5.25 -26.61 -0.14 -2.02 16 14 C 0.09 1.30 2.44 -67.63 -0.16 1.13 16 15 H 0.08 1.28 7.21 -51.93 -0.37 0.90 16 16 N -0.68 -8.06 6.07 -99.46 -0.60 -8.66 16 17 C 0.09 0.91 2.38 -67.53 -0.16 0.75 16 18 C -0.15 -1.54 5.62 -26.59 -0.15 -1.69 16 19 C 0.06 0.57 6.84 37.21 0.25 0.83 16 20 O -0.38 -4.09 10.77 -35.23 -0.38 -4.47 16 21 C 0.06 0.54 6.84 37.20 0.25 0.79 16 22 C -0.16 -1.36 5.40 -26.59 -0.14 -1.50 16 23 C 0.07 1.20 5.07 -3.83 -0.02 1.18 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.03 0.73 7.04 -51.92 -0.37 0.36 16 26 H -0.02 -0.43 7.55 -51.93 -0.39 -0.82 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 1.92 6.71 -51.93 -0.35 1.57 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.05 0.61 7.60 -51.93 -0.39 0.21 16 33 H 0.34 3.66 8.05 -39.29 -0.32 3.34 16 34 H 0.04 0.47 7.28 -51.93 -0.38 0.09 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.86 7.56 -51.93 -0.39 0.47 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.34 8.01 -51.93 -0.42 0.92 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -30.39 333.50 -9.83 -40.22 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.00 Total: -0.01 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.88 Total: -10.11 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.93 Total: -47.66 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.38 Total: -4.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.39 -9.83 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880210460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.754 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds