Wall clock time and date at job start Mon Mar 30 2020 01:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48497 * 109.46953 * 269.99629 * 3 2 1 5 5 H 1.48492 * 109.47165 * 29.99575 * 3 2 1 6 6 H 1.48503 * 109.47259 * 149.99410 * 3 2 1 7 7 C 1.37883 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99745 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99891 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.46942 * 179.97438 * 9 7 2 11 11 C 1.46850 * 111.00121 * 66.05036 * 10 9 7 12 12 C 1.53028 * 109.52769 * 185.83886 * 11 10 9 13 13 C 1.53121 * 109.27681 * 300.81801 * 12 11 10 14 14 C 1.53119 * 109.16108 * 57.65337 * 13 12 11 15 15 H 1.09001 * 109.50063 * 62.32507 * 14 13 12 16 16 N 1.46902 * 109.50677 * 182.40370 * 14 13 12 17 17 C 1.46902 * 110.99776 * 273.28081 * 16 14 13 18 18 C 1.53178 * 109.54186 * 274.20401 * 17 16 14 19 19 C 1.53097 * 109.15920 * 183.15628 * 18 17 16 20 20 O 1.42901 * 109.41653 * 57.61234 * 19 18 17 21 21 C 1.42908 * 114.09486 * 298.83872 * 20 19 18 22 22 C 1.53089 * 109.41760 * 61.15843 * 21 20 19 23 23 C 1.46848 * 111.00039 * 190.25429 * 10 9 7 24 24 H 0.96998 * 120.00412 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46932 * 60.00440 * 9 7 2 26 26 H 1.08995 * 109.46953 * 300.00373 * 9 7 2 27 27 H 1.09002 * 109.46074 * 65.81743 * 11 10 9 28 28 H 1.09001 * 109.45191 * 305.84828 * 11 10 9 29 29 H 1.09000 * 109.50681 * 180.87810 * 12 11 10 30 30 H 1.09003 * 109.53795 * 60.77418 * 12 11 10 31 31 H 1.08996 * 109.52451 * 297.75086 * 13 12 11 32 32 H 1.08999 * 109.52647 * 177.55708 * 13 12 11 33 33 H 1.00898 * 110.99566 * 37.23317 * 16 14 13 34 34 H 1.09004 * 109.61830 * 34.43126 * 17 16 14 35 35 H 1.09002 * 109.52438 * 303.05776 * 18 17 16 36 36 H 1.08997 * 109.52242 * 63.25050 * 18 17 16 37 37 H 1.09000 * 109.47765 * 177.59059 * 19 18 17 38 38 H 1.09001 * 109.48283 * 297.62300 * 19 18 17 39 39 H 1.09000 * 109.48035 * 301.17335 * 21 20 19 40 40 H 1.09001 * 109.48200 * 181.14110 * 21 20 19 41 41 H 1.08993 * 109.52533 * 182.48322 * 22 21 20 42 42 H 1.09006 * 109.52080 * 62.29676 * 22 21 20 43 43 H 1.09005 * 109.45774 * 54.15141 * 23 10 9 44 44 H 1.08999 * 109.46644 * 294.18366 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5789 0.0022 11 6 3.6525 -3.2615 -1.2504 12 6 4.0477 -4.7369 -1.1561 13 6 5.5534 -4.8414 -0.8983 14 6 5.8973 -4.0817 0.3858 15 1 5.3839 -4.5424 1.2298 16 7 7.3484 -4.1284 0.6097 17 6 7.7286 -5.3410 1.3466 18 6 7.5903 -5.0906 2.8515 19 6 8.0632 -6.3317 3.6129 20 8 9.4139 -6.6255 3.2505 21 6 9.5959 -6.9147 1.8628 22 6 9.1846 -5.6971 1.0310 23 6 5.4484 -2.6253 0.2469 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8912 26 1 3.8752 -0.6803 -0.8888 27 1 4.1855 -2.7949 -2.0788 28 1 2.5785 -3.1833 -1.4195 29 1 3.8029 -5.2397 -2.0917 30 1 3.5047 -5.2081 -0.3368 31 1 6.0975 -4.4056 -1.7362 32 1 5.8321 -5.8893 -0.7873 33 1 7.8511 -4.0629 -0.2627 34 1 7.0797 -6.1662 1.0531 35 1 8.2015 -4.2340 3.1358 36 1 6.5464 -4.8907 3.0931 37 1 8.0073 -6.1435 4.6851 38 1 7.4261 -7.1788 3.3587 39 1 8.9789 -7.7695 1.5857 40 1 10.6441 -7.1465 1.6742 41 1 9.2809 -5.9309 -0.0292 42 1 9.8280 -4.8527 1.2786 43 1 5.6789 -2.0850 1.1651 44 1 5.9731 -2.1616 -0.5885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880210460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:28 Heat of formation + Delta-G solvation = -74.408470 kcal Electronic energy + Delta-G solvation = -21306.256757 eV Core-core repulsion = 18256.733668 eV Total energy + Delta-G solvation = -3049.523089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71417 -39.75094 -37.08647 -35.09373 -33.78305 -32.54219 -32.03038 -30.00799 -28.83293 -25.48053 -24.68394 -24.56122 -23.36266 -22.24856 -21.16230 -20.61775 -18.94059 -17.40923 -17.14004 -16.89084 -16.29328 -16.20497 -15.81773 -15.75838 -15.60781 -15.16237 -14.83121 -14.56653 -14.30205 -14.16241 -13.93422 -13.58279 -13.23726 -13.10231 -12.69613 -12.67873 -12.53944 -12.27307 -12.16426 -11.86888 -11.82372 -11.69975 -11.55232 -11.38117 -11.30450 -11.11515 -10.80171 -10.54171 -9.35616 -9.02308 -8.29718 -6.32898 1.32732 1.35016 1.46041 2.33116 2.82044 3.00377 3.03884 3.46221 3.74677 3.83698 3.93845 3.97042 4.06250 4.08451 4.23976 4.31849 4.35815 4.42108 4.50698 4.60055 4.67088 4.68418 4.73906 4.76927 4.80673 4.81628 4.90979 4.94821 5.00605 5.06557 5.11960 5.13458 5.19741 5.22108 5.36133 5.38967 5.53524 5.98419 6.08706 6.27492 6.41013 6.49983 6.66559 6.73202 7.30813 8.86798 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.003853 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.007246 B = 7264.855858 C = 7600.322280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.515 4.515 8 H 0.039 0.961 9 C 0.174 3.826 10 N -0.542 5.542 11 C 0.063 3.937 12 C -0.105 4.105 13 C -0.135 4.135 14 C 0.105 3.895 15 H 0.072 0.928 16 N -0.683 5.683 17 C 0.090 3.910 18 C -0.144 4.144 19 C 0.062 3.938 20 O -0.403 6.403 21 C 0.060 3.940 22 C -0.151 4.151 23 C 0.070 3.930 24 H 0.267 0.733 25 H 0.026 0.974 26 H -0.017 1.017 27 H 0.021 0.979 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.348 0.652 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.527 -14.126 0.539 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.188 4.188 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.554 4.554 8 H 0.057 0.943 9 C 0.046 3.954 10 N -0.267 5.267 11 C -0.065 4.065 12 C -0.144 4.144 13 C -0.174 4.174 14 C -0.005 4.005 15 H 0.090 0.910 16 N -0.314 5.314 17 C -0.020 4.020 18 C -0.182 4.182 19 C -0.015 4.015 20 O -0.322 6.322 21 C -0.017 4.017 22 C -0.189 4.189 23 C -0.059 4.059 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.001 0.999 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 20.292 -13.862 1.621 24.629 hybrid contribution -0.484 0.936 -1.496 1.830 sum 19.808 -12.927 0.125 23.654 Atomic orbital electron populations 1.70037 1.08033 1.28125 1.52550 1.25821 0.95603 1.03036 0.94363 0.85733 0.79409 0.78805 0.79115 1.19246 1.20468 1.17617 1.21247 0.90946 0.93303 1.49880 0.94257 1.19899 0.94325 0.86438 0.94712 1.61710 1.13087 1.16714 1.35205 1.21967 1.00072 0.95001 0.89475 1.21491 0.96282 0.94361 1.02247 1.22205 0.96153 1.01006 0.98020 1.21362 0.87949 0.94048 0.97185 0.91005 1.60384 1.04911 1.39631 1.26509 1.21529 0.96064 0.90599 0.93808 1.22205 1.01728 0.99081 0.95206 1.22650 0.82809 0.95834 1.00162 1.87905 1.28100 1.90168 1.26066 1.22707 1.02916 0.95741 0.80340 1.22347 0.95316 0.99721 1.01492 1.21969 0.86846 0.97221 0.99815 0.92379 0.95581 0.99891 0.96055 0.92973 0.90008 0.92181 0.91383 0.90301 0.83202 0.93319 0.91696 0.91777 0.88041 0.92389 0.92271 0.87259 0.89222 0.90995 0.92000 0.95784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 2 C 0.01 0.54 5.47 84.66 0.46 1.01 16 3 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.25 -11.30 6.54 99.48 0.65 -10.64 16 7 C -0.52 -30.39 8.99 25.60 0.23 -30.16 16 8 H 0.04 2.57 7.38 -2.91 -0.02 2.55 16 9 C 0.17 8.60 3.79 85.56 0.32 8.93 16 10 N -0.54 -22.90 4.65 -900.94 -4.19 -27.08 16 11 C 0.06 2.41 5.30 86.32 0.46 2.87 16 12 C -0.11 -3.00 6.09 30.64 0.19 -2.81 16 13 C -0.13 -3.08 5.25 30.67 0.16 -2.92 16 14 C 0.10 2.75 2.44 44.97 0.11 2.86 16 15 H 0.07 2.09 7.21 -2.39 -0.02 2.08 16 16 N -0.68 -14.58 6.07 -468.57 -2.84 -17.42 16 17 C 0.09 1.63 2.38 45.04 0.11 1.73 16 18 C -0.14 -2.89 5.62 30.69 0.17 -2.71 16 19 C 0.06 1.08 6.84 72.01 0.49 1.57 16 20 O -0.40 -7.78 10.77 -148.98 -1.60 -9.39 16 21 C 0.06 0.82 6.84 72.01 0.49 1.32 16 22 C -0.15 -2.14 5.40 30.69 0.17 -1.97 16 23 C 0.07 2.39 5.07 86.32 0.44 2.83 16 24 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.03 1.30 7.04 -2.38 -0.02 1.29 16 26 H -0.02 -0.81 7.55 -2.39 -0.02 -0.83 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 2.35 6.71 -2.39 -0.02 2.34 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 32 H 0.08 1.47 7.60 -2.39 -0.02 1.45 16 33 H 0.35 6.40 8.05 -89.70 -0.72 5.68 16 34 H 0.05 0.87 7.28 -2.38 -0.02 0.86 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.42 7.56 -2.39 -0.02 1.41 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.06 2.23 8.01 -2.38 -0.02 2.21 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -67.42 333.50 -2.47 -69.89 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.18 Total: 14.18 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 3.80 Total: -17.47 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -6.73 Total: -103.95 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -1.60 Total: -9.39 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -67.42 -2.47 -69.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880210460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.514 kcal (2) G-P(sol) polarization free energy of solvation -67.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds