Wall clock time and date at job start Mon Mar 30 2020 01:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99796 * 2 1 4 4 H 1.48496 * 109.47503 * 270.00062 * 3 2 1 5 5 H 1.48503 * 109.47079 * 30.00387 * 3 2 1 6 6 H 1.48506 * 109.47103 * 149.99840 * 3 2 1 7 7 C 1.37877 * 120.00429 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99506 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00156 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.46850 * 111.00005 * 293.95590 * 10 9 7 12 12 C 1.53028 * 109.52486 * 174.16069 * 11 10 9 13 13 C 1.53123 * 109.27943 * 59.17731 * 12 11 10 14 14 C 1.53115 * 109.15805 * 302.34419 * 13 12 11 15 15 H 1.08996 * 109.50722 * 297.67498 * 14 13 12 16 16 N 1.46904 * 109.50105 * 177.59441 * 14 13 12 17 17 C 1.46902 * 111.00051 * 85.79845 * 16 14 13 18 18 C 1.53204 * 109.53943 * 206.27815 * 17 16 14 19 19 C 1.53092 * 109.15008 * 183.15569 * 18 17 16 20 20 O 1.42906 * 109.42568 * 57.59863 * 19 18 17 21 21 C 1.42901 * 114.09786 * 298.84393 * 20 19 18 22 22 C 1.53088 * 109.42158 * 61.15182 * 21 20 19 23 23 C 1.46837 * 110.99992 * 169.74354 * 10 9 7 24 24 H 0.97003 * 120.00337 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46871 * 60.00023 * 9 7 2 26 26 H 1.08999 * 109.47186 * 300.00169 * 9 7 2 27 27 H 1.08996 * 109.46598 * 54.14052 * 11 10 9 28 28 H 1.09003 * 109.46205 * 294.17791 * 11 10 9 29 29 H 1.09002 * 109.50782 * 299.23749 * 12 11 10 30 30 H 1.09000 * 109.53885 * 179.13870 * 12 11 10 31 31 H 1.09003 * 109.52391 * 182.44232 * 13 12 11 32 32 H 1.08995 * 109.52147 * 62.25277 * 13 12 11 33 33 H 1.00905 * 110.99854 * 209.75280 * 16 14 13 34 34 H 1.08995 * 109.61195 * 326.49263 * 17 16 14 35 35 H 1.08995 * 109.53838 * 63.24987 * 18 17 16 36 36 H 1.08994 * 109.51897 * 303.05203 * 18 17 16 37 37 H 1.09001 * 109.47848 * 297.61961 * 19 18 17 38 38 H 1.08997 * 109.47967 * 177.59276 * 19 18 17 39 39 H 1.09000 * 109.47898 * 181.13784 * 21 20 19 40 40 H 1.09005 * 109.47846 * 301.15284 * 21 20 19 41 41 H 1.09011 * 109.51760 * 62.29782 * 22 21 20 42 42 H 1.08998 * 109.52420 * 182.48189 * 22 21 20 43 43 H 1.09005 * 109.46781 * 65.82541 * 23 10 9 44 44 H 1.08994 * 109.46520 * 305.85410 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.6515 -3.2609 1.2525 12 6 4.0468 -4.7363 1.1592 13 6 5.5527 -4.8410 0.9026 14 6 5.8976 -4.0818 -0.3816 15 1 5.3849 -4.5428 -1.2257 16 7 7.3489 -4.1287 -0.6042 17 6 7.7324 -5.3522 -1.3211 18 6 9.1821 -5.7123 -0.9811 19 6 9.5977 -6.9422 -1.7925 20 8 9.4361 -6.6691 -3.1859 21 6 8.0922 -6.3723 -3.5704 22 6 7.6160 -5.1195 -2.8306 23 6 5.4486 -2.6253 -0.2436 24 1 -0.4851 0.8400 0.0004 25 1 3.8745 -0.6807 0.8905 26 1 3.8753 -0.6795 -0.8894 27 1 2.5774 -3.1827 1.4210 28 1 4.1838 -2.7940 2.0812 29 1 3.5044 -5.2073 0.3394 30 1 3.8012 -5.2394 2.0945 31 1 5.8315 -5.8889 0.7923 32 1 6.0962 -4.4048 1.7408 33 1 7.6660 -3.3068 -1.0963 34 1 7.0749 -6.1701 -1.0265 35 1 9.2627 -5.9338 0.0831 36 1 9.8334 -4.8746 -1.2301 37 1 8.9721 -7.7901 -1.5135 38 1 10.6419 -7.1776 -1.5868 39 1 8.0520 -6.1970 -4.6454 40 1 7.4470 -7.2129 -3.3148 41 1 8.2358 -4.2697 -3.1170 42 1 6.5766 -4.9169 -3.0889 43 1 5.9727 -2.1614 0.5921 44 1 5.6799 -2.0854 -1.1618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880210461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:31 Heat of formation + Delta-G solvation = -52.556488 kcal Electronic energy + Delta-G solvation = -21306.553877 eV Core-core repulsion = 18257.978361 eV Total energy + Delta-G solvation = -3048.575516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82965 -38.52833 -35.93102 -33.41365 -32.01832 -31.54319 -31.24980 -28.39802 -27.35271 -24.30056 -23.72149 -23.30364 -22.20353 -20.57078 -20.37471 -19.23634 -16.87374 -16.56657 -16.22919 -15.82759 -15.11967 -14.94241 -14.54603 -14.31016 -14.14748 -14.04889 -13.82501 -13.40749 -12.86414 -12.75651 -12.59813 -12.23538 -12.07262 -11.60709 -11.55272 -11.42964 -11.32384 -10.93312 -10.84386 -10.59596 -10.54120 -10.40514 -10.21269 -9.94447 -9.90916 -9.68294 -9.26304 -8.58608 -8.40913 -7.38586 -6.07019 -4.04472 3.26846 3.34469 3.36559 3.63045 3.94442 4.40295 4.52717 4.62895 4.76321 4.83840 4.94360 4.97766 5.08493 5.21493 5.24930 5.25796 5.29238 5.43333 5.46951 5.49431 5.60132 5.65584 5.74358 5.82034 5.89859 5.93242 5.99123 6.11422 6.18463 6.25460 6.26902 6.32333 6.66474 6.68509 6.86344 6.94772 6.97857 7.09808 7.34674 7.58276 7.89447 8.05513 8.64081 9.01261 9.54706 11.06002 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031105 B = 0.003844 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.960237 B = 7281.776980 C = 7614.931619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.525 5.525 11 C 0.063 3.937 12 C -0.118 4.118 13 C -0.103 4.103 14 C 0.091 3.909 15 H 0.053 0.947 16 N -0.681 5.681 17 C 0.088 3.912 18 C -0.142 4.142 19 C 0.060 3.940 20 O -0.386 6.386 21 C 0.065 3.935 22 C -0.187 4.187 23 C 0.054 3.946 24 H 0.264 0.736 25 H -0.011 1.011 26 H 0.023 0.977 27 H 0.089 0.911 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.341 0.659 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.030 0.970 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.539 -12.606 -2.239 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.250 5.250 11 C -0.065 4.065 12 C -0.156 4.156 13 C -0.141 4.141 14 C -0.018 4.018 15 H 0.071 0.929 16 N -0.311 5.311 17 C -0.022 4.022 18 C -0.180 4.180 19 C -0.017 4.017 20 O -0.304 6.304 21 C -0.012 4.012 22 C -0.226 4.226 23 C -0.076 4.076 24 H 0.074 0.926 25 H 0.006 0.994 26 H 0.041 0.959 27 H 0.107 0.893 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.048 0.952 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.422 -12.968 -2.111 21.821 hybrid contribution 0.179 1.727 -0.090 1.739 sum 17.602 -11.241 -2.201 21.000 Atomic orbital electron populations 1.69891 1.06108 1.26847 1.51068 1.24896 0.94734 0.98836 0.94845 0.86873 0.80316 0.84056 0.78581 1.20162 1.21165 1.19299 1.21027 0.88672 0.94732 1.50317 0.90098 1.20153 0.97104 0.84018 0.95020 1.61815 1.09813 1.18926 1.34455 1.21989 1.02218 0.92372 0.89930 1.21628 0.95265 0.97390 1.01334 1.21550 0.96132 0.99058 0.97345 1.21541 0.86112 0.96494 0.97694 0.92928 1.60610 1.14272 1.04138 1.52094 1.21610 0.96397 0.93751 0.90442 1.22183 0.96287 0.98694 1.00873 1.22615 1.01719 0.96203 0.81167 1.87921 1.27738 1.90279 1.24489 1.22510 0.83413 0.95789 0.99503 1.22964 1.02549 0.99639 0.97485 1.22140 0.90579 0.94615 1.00218 0.92649 0.99378 0.95923 0.89273 0.96178 0.91522 0.92011 0.92924 0.91936 0.84064 0.90419 0.90301 0.91060 0.93271 0.88863 0.88941 0.93155 0.90849 0.90585 0.95173 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.51 -14.41 8.98 -34.44 -0.31 -14.72 16 8 H 0.08 2.48 7.38 -52.49 -0.39 2.10 16 9 C 0.16 3.97 3.79 -4.98 -0.02 3.95 16 10 N -0.53 -10.91 4.65 -236.12 -1.10 -12.01 16 11 C 0.06 1.21 5.30 -3.84 -0.02 1.19 16 12 C -0.12 -1.80 6.09 -26.65 -0.16 -1.96 16 13 C -0.10 -1.41 5.49 -26.61 -0.15 -1.56 16 14 C 0.09 1.28 2.47 -67.63 -0.17 1.12 16 15 H 0.05 0.79 7.28 -51.93 -0.38 0.41 16 16 N -0.68 -8.06 6.07 -99.45 -0.60 -8.66 16 17 C 0.09 0.90 2.35 -67.52 -0.16 0.74 16 18 C -0.14 -1.29 5.75 -26.58 -0.15 -1.44 16 19 C 0.06 0.51 6.84 37.21 0.25 0.77 16 20 O -0.39 -4.06 10.77 -35.23 -0.38 -4.44 16 21 C 0.07 0.60 6.84 37.20 0.25 0.85 16 22 C -0.19 -1.82 5.39 -26.60 -0.14 -1.97 16 23 C 0.05 0.91 4.72 -3.84 -0.02 0.90 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 26 H 0.02 0.55 7.41 -51.93 -0.38 0.17 16 27 H 0.09 1.92 6.72 -51.93 -0.35 1.57 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.65 7.55 -51.93 -0.39 0.26 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.34 3.91 8.03 -39.29 -0.32 3.60 16 34 H 0.08 0.84 7.21 -51.93 -0.37 0.46 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.73 8.08 -51.92 -0.42 0.31 16 42 H 0.08 0.79 7.61 -51.93 -0.40 0.39 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.05 8.00 -51.93 -0.42 0.64 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -30.15 333.48 -9.84 -39.99 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.00 Total: 0.26 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.89 Total: -10.27 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.93 Total: -47.38 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.38 Total: -4.44 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.15 -9.84 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880210461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.565 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds