Wall clock time and date at job start Mon Mar 30 2020 01:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99796 * 2 1 4 4 H 1.48496 * 109.47503 * 270.00062 * 3 2 1 5 5 H 1.48503 * 109.47079 * 30.00387 * 3 2 1 6 6 H 1.48506 * 109.47103 * 149.99840 * 3 2 1 7 7 C 1.37877 * 120.00429 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99506 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00156 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.46850 * 111.00005 * 293.95590 * 10 9 7 12 12 C 1.53028 * 109.52486 * 174.16069 * 11 10 9 13 13 C 1.53123 * 109.27943 * 59.17731 * 12 11 10 14 14 C 1.53115 * 109.15805 * 302.34419 * 13 12 11 15 15 H 1.08996 * 109.50722 * 297.67498 * 14 13 12 16 16 N 1.46904 * 109.50105 * 177.59441 * 14 13 12 17 17 C 1.46902 * 111.00051 * 85.79845 * 16 14 13 18 18 C 1.53204 * 109.53943 * 206.27815 * 17 16 14 19 19 C 1.53092 * 109.15008 * 183.15569 * 18 17 16 20 20 O 1.42906 * 109.42568 * 57.59863 * 19 18 17 21 21 C 1.42901 * 114.09786 * 298.84393 * 20 19 18 22 22 C 1.53088 * 109.42158 * 61.15182 * 21 20 19 23 23 C 1.46837 * 110.99992 * 169.74354 * 10 9 7 24 24 H 0.97003 * 120.00337 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46871 * 60.00023 * 9 7 2 26 26 H 1.08999 * 109.47186 * 300.00169 * 9 7 2 27 27 H 1.08996 * 109.46598 * 54.14052 * 11 10 9 28 28 H 1.09003 * 109.46205 * 294.17791 * 11 10 9 29 29 H 1.09002 * 109.50782 * 299.23749 * 12 11 10 30 30 H 1.09000 * 109.53885 * 179.13870 * 12 11 10 31 31 H 1.09003 * 109.52391 * 182.44232 * 13 12 11 32 32 H 1.08995 * 109.52147 * 62.25277 * 13 12 11 33 33 H 1.00905 * 110.99854 * 209.75280 * 16 14 13 34 34 H 1.08995 * 109.61195 * 326.49263 * 17 16 14 35 35 H 1.08995 * 109.53838 * 63.24987 * 18 17 16 36 36 H 1.08994 * 109.51897 * 303.05203 * 18 17 16 37 37 H 1.09001 * 109.47848 * 297.61961 * 19 18 17 38 38 H 1.08997 * 109.47967 * 177.59276 * 19 18 17 39 39 H 1.09000 * 109.47898 * 181.13784 * 21 20 19 40 40 H 1.09005 * 109.47846 * 301.15284 * 21 20 19 41 41 H 1.09011 * 109.51760 * 62.29782 * 22 21 20 42 42 H 1.08998 * 109.52420 * 182.48189 * 22 21 20 43 43 H 1.09005 * 109.46781 * 65.82541 * 23 10 9 44 44 H 1.08994 * 109.46520 * 305.85410 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.6515 -3.2609 1.2525 12 6 4.0468 -4.7363 1.1592 13 6 5.5527 -4.8410 0.9026 14 6 5.8976 -4.0818 -0.3816 15 1 5.3849 -4.5428 -1.2257 16 7 7.3489 -4.1287 -0.6042 17 6 7.7324 -5.3522 -1.3211 18 6 9.1821 -5.7123 -0.9811 19 6 9.5977 -6.9422 -1.7925 20 8 9.4361 -6.6691 -3.1859 21 6 8.0922 -6.3723 -3.5704 22 6 7.6160 -5.1195 -2.8306 23 6 5.4486 -2.6253 -0.2436 24 1 -0.4851 0.8400 0.0004 25 1 3.8745 -0.6807 0.8905 26 1 3.8753 -0.6795 -0.8894 27 1 2.5774 -3.1827 1.4210 28 1 4.1838 -2.7940 2.0812 29 1 3.5044 -5.2073 0.3394 30 1 3.8012 -5.2394 2.0945 31 1 5.8315 -5.8889 0.7923 32 1 6.0962 -4.4048 1.7408 33 1 7.6660 -3.3068 -1.0963 34 1 7.0749 -6.1701 -1.0265 35 1 9.2627 -5.9338 0.0831 36 1 9.8334 -4.8746 -1.2301 37 1 8.9721 -7.7901 -1.5135 38 1 10.6419 -7.1776 -1.5868 39 1 8.0520 -6.1970 -4.6454 40 1 7.4470 -7.2129 -3.3148 41 1 8.2358 -4.2697 -3.1170 42 1 6.5766 -4.9169 -3.0889 43 1 5.9727 -2.1614 0.5921 44 1 5.6799 -2.0854 -1.1618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880210461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:31 Heat of formation + Delta-G solvation = -74.596620 kcal Electronic energy + Delta-G solvation = -21307.509609 eV Core-core repulsion = 18257.978361 eV Total energy + Delta-G solvation = -3049.531248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.72424 -39.74962 -37.06064 -35.11585 -33.76134 -32.64564 -31.99152 -29.92781 -28.88273 -25.57788 -24.55979 -24.43472 -23.60561 -22.16844 -21.21806 -20.53936 -18.95995 -17.43283 -17.12682 -16.93000 -16.31215 -16.18062 -15.91747 -15.64376 -15.30486 -15.27232 -14.96829 -14.65671 -14.52784 -14.00287 -13.95104 -13.52046 -13.27888 -13.10156 -12.72079 -12.42936 -12.40465 -12.31750 -12.22844 -12.00049 -11.92147 -11.72704 -11.63809 -11.31960 -11.21768 -11.10930 -10.79792 -10.56154 -9.36926 -9.05717 -8.30143 -6.33682 1.33071 1.34385 1.45035 2.32445 2.82241 2.99481 3.03246 3.43604 3.73030 3.83211 3.91206 3.99869 4.06346 4.13956 4.23578 4.30373 4.31310 4.41907 4.54092 4.56042 4.60973 4.68722 4.73860 4.78504 4.80188 4.86933 4.90228 4.96619 5.04926 5.07883 5.12654 5.13036 5.18730 5.24021 5.30865 5.45899 5.52066 5.96407 6.07392 6.26997 6.36236 6.41146 6.64669 6.72519 7.30008 8.86333 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031105 B = 0.003844 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.960237 B = 7281.776980 C = 7614.931619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.516 4.516 8 H 0.039 0.961 9 C 0.173 3.827 10 N -0.540 5.540 11 C 0.064 3.936 12 C -0.109 4.109 13 C -0.095 4.095 14 C 0.103 3.897 15 H 0.044 0.956 16 N -0.677 5.677 17 C 0.089 3.911 18 C -0.135 4.135 19 C 0.058 3.942 20 O -0.403 6.403 21 C 0.064 3.936 22 C -0.182 4.182 23 C 0.055 3.945 24 H 0.267 0.733 25 H -0.015 1.015 26 H 0.027 0.973 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.344 0.656 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.104 -12.973 -2.241 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.045 3.955 10 N -0.265 5.265 11 C -0.064 4.064 12 C -0.147 4.147 13 C -0.134 4.134 14 C -0.007 4.007 15 H 0.062 0.938 16 N -0.307 5.307 17 C -0.021 4.021 18 C -0.173 4.173 19 C -0.019 4.019 20 O -0.322 6.322 21 C -0.013 4.013 22 C -0.222 4.222 23 C -0.074 4.074 24 H 0.076 0.924 25 H 0.003 0.997 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.012 -13.361 -2.116 24.156 hybrid contribution -0.657 1.752 -0.091 1.873 sum 19.355 -11.609 -2.207 22.678 Atomic orbital electron populations 1.70043 1.08068 1.28139 1.52496 1.25831 0.95604 1.03074 0.94343 0.85724 0.79251 0.78720 0.79292 1.18894 1.20609 1.17786 1.21239 0.90957 0.93307 1.49961 0.94297 1.19912 0.94367 0.86360 0.94812 1.61726 1.12554 1.16817 1.35384 1.21964 1.00046 0.95051 0.89386 1.21564 0.96551 0.94307 1.02287 1.21492 0.94525 1.00343 0.96991 1.21344 0.87462 0.94230 0.97702 0.93754 1.60628 1.12349 1.05026 1.52728 1.21664 0.97162 0.92824 0.90497 1.22119 0.95108 0.98828 1.01278 1.22750 1.02908 0.96078 0.80150 1.87904 1.28329 1.90356 1.25627 1.22571 0.83135 0.95624 0.99954 1.22895 1.01989 0.99958 0.97316 1.22205 0.87939 0.96959 1.00254 0.92375 0.99723 0.95455 0.92890 0.96120 0.92173 0.89877 0.90703 0.91894 0.83742 0.90498 0.89781 0.91593 0.92347 0.87394 0.88158 0.92421 0.91171 0.91355 0.95165 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 7 C -0.52 -30.16 8.98 25.60 0.23 -29.93 16 8 H 0.04 2.53 7.38 -2.91 -0.02 2.51 16 9 C 0.17 8.41 3.79 85.56 0.32 8.73 16 10 N -0.54 -22.46 4.65 -900.96 -4.19 -26.65 16 11 C 0.06 2.46 5.30 86.32 0.46 2.92 16 12 C -0.11 -3.19 6.09 30.64 0.19 -3.01 16 13 C -0.10 -2.39 5.49 30.67 0.17 -2.23 16 14 C 0.10 2.69 2.47 44.97 0.11 2.81 16 15 H 0.04 1.26 7.28 -2.39 -0.02 1.24 16 16 N -0.68 -14.47 6.07 -468.55 -2.85 -17.31 16 17 C 0.09 1.60 2.35 45.04 0.11 1.71 16 18 C -0.14 -2.11 5.75 30.69 0.18 -1.93 16 19 C 0.06 0.83 6.84 72.01 0.49 1.33 16 20 O -0.40 -7.63 10.77 -148.98 -1.60 -9.24 16 21 C 0.06 1.06 6.84 72.01 0.49 1.55 16 22 C -0.18 -3.24 5.39 30.68 0.17 -3.07 16 23 C 0.06 1.80 4.72 86.33 0.41 2.21 16 24 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 25 H -0.01 -0.73 7.18 -2.39 -0.02 -0.75 16 26 H 0.03 1.30 7.41 -2.39 -0.02 1.29 16 27 H 0.05 2.40 6.72 -2.39 -0.02 2.38 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 1.60 7.55 -2.39 -0.02 1.58 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.34 7.16 8.03 -89.69 -0.72 6.44 16 34 H 0.08 1.44 7.21 -2.39 -0.02 1.42 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 40 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.07 1.29 8.08 -2.38 -0.02 1.27 16 42 H 0.07 1.32 7.61 -2.39 -0.02 1.31 16 43 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.07 2.13 8.00 -2.39 -0.02 2.11 16 Total: -1.00 -65.96 333.48 -2.49 -68.45 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.18 Total: 15.63 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 3.78 Total: -17.93 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -6.73 Total: -103.08 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -1.60 Total: -9.24 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -65.96 -2.49 -68.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880210461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.149 kcal (2) G-P(sol) polarization free energy of solvation -65.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds