Wall clock time and date at job start Mon Mar 30 2020 01:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 115.56244 * 2 1 4 4 C 1.53002 * 117.49785 * 214.31061 * 2 1 3 5 5 C 1.52992 * 60.00031 * 252.50827 * 4 2 1 6 6 C 1.53003 * 117.49667 * 107.51429 * 5 4 2 7 7 C 1.52998 * 117.49961 * 252.50411 * 5 4 2 8 8 N 1.46493 * 109.47698 * 294.65505 * 7 5 4 9 9 C 1.34776 * 120.00406 * 174.77376 * 8 7 5 10 10 O 1.21586 * 119.99610 * 359.71794 * 9 8 7 11 11 N 1.34773 * 119.99885 * 179.72367 * 9 8 7 12 12 C 1.46500 * 119.99564 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47088 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47153 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46963 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99654 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99941 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99879 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00077 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47168 * 90.00095 * 19 17 15 21 21 H 1.48501 * 109.47509 * 209.99954 * 19 17 15 22 22 H 1.48502 * 109.47202 * 329.99904 * 19 17 15 23 23 H 1.09001 * 109.46529 * 274.31167 * 1 2 3 24 24 H 1.08992 * 109.47066 * 34.30443 * 1 2 3 25 25 H 1.09001 * 109.47136 * 154.31484 * 1 2 3 26 26 H 1.08996 * 109.46873 * 205.69330 * 3 2 1 27 27 H 1.09001 * 109.46799 * 325.69339 * 3 2 1 28 28 H 1.08995 * 109.46735 * 85.69383 * 3 2 1 29 29 H 1.09004 * 117.49611 * 145.01519 * 4 2 1 30 30 H 1.09010 * 117.51523 * 359.97438 * 4 2 1 31 31 H 1.09000 * 109.47276 * 211.36345 * 6 5 4 32 32 H 1.09003 * 109.47307 * 331.36294 * 6 5 4 33 33 H 1.08996 * 109.47200 * 91.36169 * 6 5 4 34 34 H 1.09000 * 109.47132 * 174.65096 * 7 5 4 35 35 H 1.09004 * 109.46590 * 54.65861 * 7 5 4 36 36 H 0.97005 * 119.99691 * 354.49312 * 8 7 5 37 37 H 0.97001 * 120.00134 * 0.02562 * 11 9 8 38 38 H 1.08996 * 109.47918 * 300.00308 * 12 11 9 39 39 H 1.09005 * 109.47189 * 60.00307 * 12 11 9 40 40 H 1.09003 * 109.46553 * 300.00181 * 13 12 11 41 41 H 1.08991 * 109.47078 * 59.99917 * 13 12 11 42 42 H 1.09002 * 109.46841 * 300.00055 * 14 13 12 43 43 H 1.09005 * 109.47024 * 59.99783 * 14 13 12 44 44 H 0.97003 * 120.00153 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1210 0.7649 6 6 1.3593 -2.1566 1.4714 7 6 3.5491 -0.7761 1.4713 8 7 4.5444 -1.8123 1.1858 9 6 5.8126 -1.6661 1.6181 10 8 6.1318 -0.6717 2.2406 11 7 6.7269 -2.6221 1.3601 12 6 8.1055 -2.4629 1.8296 13 6 8.9319 -3.6792 1.4068 14 6 10.3715 -3.5132 1.8976 15 6 11.1853 -4.7115 1.4818 16 1 10.7219 -5.5116 0.9237 17 6 12.5214 -4.7863 1.8138 18 7 13.0857 -3.8117 2.4930 19 14 13.5299 -6.2719 1.2991 20 1 14.1310 -6.0236 -0.0360 21 1 14.6090 -6.5059 2.2920 22 1 12.6515 -7.4674 1.2318 23 1 -0.3632 0.0773 1.0248 24 1 -0.3633 0.8488 -0.5791 25 1 -0.3633 -0.9261 -0.4454 26 1 3.1824 1.3084 -0.4455 27 1 1.5812 2.0743 -0.5792 28 1 2.2774 1.7413 1.0247 29 1 3.1715 -0.8751 -1.2684 30 1 1.6114 -1.8590 -1.2681 31 1 1.0048 -1.7477 2.4175 32 1 0.5060 -2.4020 0.8391 33 1 1.9422 -3.0579 1.6608 34 1 3.3796 -0.7215 2.5467 35 1 3.9131 0.1864 1.1117 36 1 4.2898 -2.6057 0.6891 37 1 6.4723 -3.4152 0.8631 38 1 8.5363 -1.5619 1.3930 39 1 8.1118 -2.3787 2.9163 40 1 8.5012 -4.5804 1.8432 41 1 8.9255 -3.7629 0.3202 42 1 10.8023 -2.6118 1.4616 43 1 10.3775 -3.4297 2.9845 44 1 14.0256 -3.8645 2.7270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883326048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:42 Heat of formation + Delta-G solvation = -38.380876 kcal Electronic energy + Delta-G solvation = -20024.622464 eV Core-core repulsion = 16976.661649 eV Total energy + Delta-G solvation = -3047.960816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20910 -39.13913 -35.47169 -34.26280 -33.24338 -31.28799 -30.64403 -28.64177 -27.67041 -26.83788 -25.55308 -22.95068 -20.99645 -20.65284 -20.27760 -18.73698 -17.50234 -16.50382 -15.94585 -15.75597 -15.20785 -15.07076 -14.53686 -14.32228 -14.14701 -13.88865 -13.79006 -13.42272 -12.75269 -12.70038 -12.48293 -12.38691 -12.35215 -12.25967 -11.78454 -11.71868 -11.65106 -11.08366 -10.88895 -10.69608 -10.57635 -10.20157 -10.04408 -9.83258 -9.76225 -9.40479 -9.11589 -9.10434 -8.53288 -8.35557 -6.00184 -4.03203 2.76123 3.31718 3.37925 3.39888 3.41576 3.43819 4.22772 4.28279 4.36729 4.45346 4.56525 4.65864 4.72178 5.11308 5.28493 5.35483 5.37866 5.40325 5.47919 5.51593 5.55862 5.57677 5.62911 5.64755 5.74837 5.78842 5.84772 5.85191 5.92925 6.04113 6.22068 6.51821 6.57660 6.65753 6.85582 7.05593 7.14386 7.65921 7.79079 7.98952 8.22012 8.39923 8.81968 9.03544 9.60774 11.11125 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047299 B = 0.002515 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.833111 B =11132.617301 C =11344.369747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.111 4.111 3 C -0.120 4.120 4 C -0.162 4.162 5 C -0.139 4.139 6 C -0.114 4.114 7 C 0.174 3.826 8 N -0.748 5.748 9 C 0.699 3.301 10 O -0.595 6.595 11 N -0.742 5.742 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.394 0.606 37 H 0.393 0.607 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.771 5.269 -5.953 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.112 4.112 3 C -0.177 4.177 4 C -0.200 4.200 5 C -0.139 4.139 6 C -0.171 4.171 7 C 0.050 3.950 8 N -0.404 5.404 9 C 0.399 3.601 10 O -0.473 6.473 11 N -0.397 5.397 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.228 0.772 37 H 0.226 0.774 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.275 6.268 -5.267 27.521 hybrid contribution 0.456 -1.600 -0.727 1.815 sum -25.818 4.668 -5.994 26.913 Atomic orbital electron populations 1.21350 0.91869 1.01878 1.01966 1.21634 0.94762 0.91260 1.03543 1.21417 1.00201 0.93839 1.02259 1.23332 1.02519 1.01119 0.92981 1.21859 0.97380 1.00890 0.93818 1.21316 0.98400 0.97285 1.00078 1.20621 0.84332 0.90907 0.99176 1.45078 1.08582 1.24842 1.61891 1.16026 0.80461 0.83643 0.79996 1.90915 1.79814 1.30569 1.46048 1.45379 1.10896 1.22485 1.60897 1.21498 0.78081 0.99971 0.99254 1.21886 0.98495 0.95016 1.00401 1.19032 0.88203 0.97402 0.96772 1.21206 0.94574 1.04845 1.35373 0.92668 1.25035 0.98008 0.96286 0.95202 1.69970 1.12187 1.32109 1.39008 0.86579 0.79931 0.83075 0.78301 1.20673 1.21217 1.19919 0.92072 0.92084 0.92417 0.92084 0.92006 0.91830 0.88526 0.88654 0.92020 0.92212 0.92070 0.91701 0.90953 0.77245 0.77380 0.92027 0.92003 0.92798 0.92804 0.96249 0.96238 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 8.72 37.16 0.32 -0.33 16 2 C -0.11 -0.79 2.70 -154.50 -0.42 -1.21 16 3 C -0.12 -0.89 8.38 37.16 0.31 -0.58 16 4 C -0.16 -1.16 9.19 -26.73 -0.25 -1.41 16 5 C -0.14 -1.07 2.11 -154.51 -0.33 -1.40 16 6 C -0.11 -0.76 9.12 37.16 0.34 -0.42 16 7 C 0.17 1.83 5.39 -4.05 -0.02 1.81 16 8 N -0.75 -8.50 5.52 -65.23 -0.36 -8.86 16 9 C 0.70 11.07 8.57 -86.92 -0.74 10.33 16 10 O -0.60 -12.09 16.34 5.29 0.09 -12.00 16 11 N -0.74 -11.12 5.56 -65.22 -0.36 -11.49 16 12 C 0.14 2.48 5.67 -4.04 -0.02 2.45 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.32 7.92 -51.93 -0.41 -0.09 16 25 H 0.06 0.30 7.28 -51.93 -0.38 -0.08 16 26 H 0.06 0.50 7.33 -51.93 -0.38 0.12 16 27 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 28 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 30 H 0.10 0.59 8.05 -51.92 -0.42 0.17 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.34 6.96 -51.93 -0.36 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 35 H 0.07 0.85 6.06 -51.93 -0.31 0.54 16 36 H 0.39 3.45 8.49 -40.82 -0.35 3.11 16 37 H 0.39 4.70 8.49 -40.82 -0.35 4.35 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -32.88 358.31 -8.99 -41.87 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.97 Total: 1.05 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.49 Total: -6.28 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.01 Total: -46.63 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.88 -8.99 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883326048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.493 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds