Wall clock time and date at job start Mon Mar 30 2020 01:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 115.56244 * 2 1 4 4 C 1.53002 * 117.49785 * 214.31061 * 2 1 3 5 5 C 1.52992 * 60.00031 * 252.50827 * 4 2 1 6 6 C 1.53003 * 117.49667 * 107.51429 * 5 4 2 7 7 C 1.52998 * 117.49961 * 252.50411 * 5 4 2 8 8 N 1.46493 * 109.47698 * 294.65505 * 7 5 4 9 9 C 1.34776 * 120.00406 * 174.77376 * 8 7 5 10 10 O 1.21586 * 119.99610 * 359.71794 * 9 8 7 11 11 N 1.34773 * 119.99885 * 179.72367 * 9 8 7 12 12 C 1.46500 * 119.99564 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47088 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47153 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46963 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99654 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99941 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99879 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00077 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47168 * 90.00095 * 19 17 15 21 21 H 1.48501 * 109.47509 * 209.99954 * 19 17 15 22 22 H 1.48502 * 109.47202 * 329.99904 * 19 17 15 23 23 H 1.09001 * 109.46529 * 274.31167 * 1 2 3 24 24 H 1.08992 * 109.47066 * 34.30443 * 1 2 3 25 25 H 1.09001 * 109.47136 * 154.31484 * 1 2 3 26 26 H 1.08996 * 109.46873 * 205.69330 * 3 2 1 27 27 H 1.09001 * 109.46799 * 325.69339 * 3 2 1 28 28 H 1.08995 * 109.46735 * 85.69383 * 3 2 1 29 29 H 1.09004 * 117.49611 * 145.01519 * 4 2 1 30 30 H 1.09010 * 117.51523 * 359.97438 * 4 2 1 31 31 H 1.09000 * 109.47276 * 211.36345 * 6 5 4 32 32 H 1.09003 * 109.47307 * 331.36294 * 6 5 4 33 33 H 1.08996 * 109.47200 * 91.36169 * 6 5 4 34 34 H 1.09000 * 109.47132 * 174.65096 * 7 5 4 35 35 H 1.09004 * 109.46590 * 54.65861 * 7 5 4 36 36 H 0.97005 * 119.99691 * 354.49312 * 8 7 5 37 37 H 0.97001 * 120.00134 * 0.02562 * 11 9 8 38 38 H 1.08996 * 109.47918 * 300.00308 * 12 11 9 39 39 H 1.09005 * 109.47189 * 60.00307 * 12 11 9 40 40 H 1.09003 * 109.46553 * 300.00181 * 13 12 11 41 41 H 1.08991 * 109.47078 * 59.99917 * 13 12 11 42 42 H 1.09002 * 109.46841 * 300.00055 * 14 13 12 43 43 H 1.09005 * 109.47024 * 59.99783 * 14 13 12 44 44 H 0.97003 * 120.00153 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1210 0.7649 6 6 1.3593 -2.1566 1.4714 7 6 3.5491 -0.7761 1.4713 8 7 4.5444 -1.8123 1.1858 9 6 5.8126 -1.6661 1.6181 10 8 6.1318 -0.6717 2.2406 11 7 6.7269 -2.6221 1.3601 12 6 8.1055 -2.4629 1.8296 13 6 8.9319 -3.6792 1.4068 14 6 10.3715 -3.5132 1.8976 15 6 11.1853 -4.7115 1.4818 16 1 10.7219 -5.5116 0.9237 17 6 12.5214 -4.7863 1.8138 18 7 13.0857 -3.8117 2.4930 19 14 13.5299 -6.2719 1.2991 20 1 14.1310 -6.0236 -0.0360 21 1 14.6090 -6.5059 2.2920 22 1 12.6515 -7.4674 1.2318 23 1 -0.3632 0.0773 1.0248 24 1 -0.3633 0.8488 -0.5791 25 1 -0.3633 -0.9261 -0.4454 26 1 3.1824 1.3084 -0.4455 27 1 1.5812 2.0743 -0.5792 28 1 2.2774 1.7413 1.0247 29 1 3.1715 -0.8751 -1.2684 30 1 1.6114 -1.8590 -1.2681 31 1 1.0048 -1.7477 2.4175 32 1 0.5060 -2.4020 0.8391 33 1 1.9422 -3.0579 1.6608 34 1 3.3796 -0.7215 2.5467 35 1 3.9131 0.1864 1.1117 36 1 4.2898 -2.6057 0.6891 37 1 6.4723 -3.4152 0.8631 38 1 8.5363 -1.5619 1.3930 39 1 8.1118 -2.3787 2.9163 40 1 8.5012 -4.5804 1.8432 41 1 8.9255 -3.7629 0.3202 42 1 10.8023 -2.6118 1.4616 43 1 10.3775 -3.4297 2.9845 44 1 14.0256 -3.8645 2.7270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883326048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:41 Heat of formation + Delta-G solvation = -59.711881 kcal Electronic energy + Delta-G solvation = -20025.547446 eV Core-core repulsion = 16976.661649 eV Total energy + Delta-G solvation = -3048.885798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23037 -40.04643 -37.03192 -35.40941 -35.15958 -32.97626 -31.40912 -29.34867 -28.62225 -28.03639 -26.62864 -24.74110 -22.30627 -21.99468 -21.27816 -19.75914 -18.61121 -18.28785 -17.23718 -16.95357 -16.49219 -16.10786 -15.94172 -15.51794 -15.30693 -15.04061 -14.62655 -14.26519 -14.16765 -13.72711 -13.67099 -13.31443 -13.25668 -13.07750 -12.88813 -12.86120 -12.73931 -12.53949 -12.36396 -12.29358 -11.72336 -11.66905 -11.65907 -11.33665 -11.16317 -10.69481 -10.54836 -10.40184 -10.32764 -9.74481 -8.18823 -6.30391 1.42043 1.43664 1.54524 1.66638 2.14284 2.42434 2.71479 3.14835 3.38778 3.59867 3.70718 3.86993 3.99785 4.17645 4.19287 4.23876 4.48784 4.56833 4.68556 4.76657 4.80791 4.90128 4.93142 4.96453 4.99988 5.00540 5.05044 5.06943 5.10758 5.17242 5.17673 5.29800 5.37331 5.46572 5.50212 5.51373 5.55394 5.71767 5.84949 6.02241 6.23266 6.86952 7.12277 7.39098 7.58254 8.93387 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047299 B = 0.002515 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.833111 B =11132.617301 C =11344.369747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.122 4.122 4 C -0.157 4.157 5 C -0.140 4.140 6 C -0.111 4.111 7 C 0.173 3.827 8 N -0.725 5.725 9 C 0.696 3.304 10 O -0.643 6.643 11 N -0.730 5.730 12 C 0.150 3.850 13 C -0.099 4.099 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.260 1.260 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.411 0.589 37 H 0.412 0.588 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.068 0.932 42 H -0.008 1.008 43 H -0.008 1.008 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.623 3.401 -7.466 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.179 4.179 4 C -0.194 4.194 5 C -0.140 4.140 6 C -0.168 4.168 7 C 0.049 3.951 8 N -0.382 5.382 9 C 0.396 3.604 10 O -0.525 6.525 11 N -0.386 5.386 12 C 0.025 3.975 13 C -0.137 4.137 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.184 1.184 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.247 0.753 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.189 4.354 -6.822 29.328 hybrid contribution 1.000 -0.947 -0.248 1.399 sum -27.189 3.408 -7.070 28.299 Atomic orbital electron populations 1.21360 0.90442 1.02697 1.02339 1.21743 0.95758 0.90754 1.02928 1.21424 0.99844 0.94652 1.01963 1.23361 1.02384 1.01374 0.92237 1.21751 0.96148 1.01991 0.94159 1.21312 0.98594 0.96695 1.00171 1.20654 0.85384 0.90106 0.98924 1.44901 1.07040 1.25522 1.60718 1.16194 0.81573 0.82961 0.79714 1.90887 1.80848 1.32541 1.48246 1.45015 1.09471 1.23186 1.60880 1.21070 0.79659 0.98606 0.98167 1.21583 0.94989 0.96078 1.01089 1.18950 0.91773 0.95794 0.94964 1.21678 0.95240 1.05628 1.35246 0.91469 1.26047 0.99550 0.99544 0.95124 1.70119 1.12649 1.34455 1.40370 0.85395 0.78090 0.79280 0.77951 1.19809 1.21074 1.18378 0.91896 0.91483 0.91446 0.93373 0.90807 0.92462 0.89489 0.87018 0.92197 0.90702 0.92103 0.92800 0.92424 0.75286 0.75181 0.93642 0.93611 0.91326 0.91319 0.98983 0.98966 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 8.72 71.98 0.63 -0.38 16 2 C -0.11 -1.40 2.70 -52.18 -0.14 -1.54 16 3 C -0.12 -1.73 8.38 71.98 0.60 -1.13 16 4 C -0.16 -1.91 9.19 30.59 0.28 -1.63 16 5 C -0.14 -1.94 2.11 -52.18 -0.11 -2.05 16 6 C -0.11 -1.22 9.12 71.98 0.66 -0.57 16 7 C 0.17 3.59 5.39 86.38 0.47 4.05 16 8 N -0.73 -15.74 5.52 -478.55 -2.64 -18.38 16 9 C 0.70 21.82 8.57 179.06 1.53 23.35 16 10 O -0.64 -26.72 16.34 -3.99 -0.07 -26.79 16 11 N -0.73 -21.12 5.56 -478.53 -2.66 -23.78 16 12 C 0.15 5.51 5.67 86.38 0.49 6.00 16 13 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 14 C 0.02 1.21 4.97 29.85 0.15 1.36 16 15 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 18 N -0.94 -57.65 13.29 21.45 0.28 -57.36 16 19 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.07 0.54 7.92 -2.39 -0.02 0.52 16 25 H 0.07 0.49 7.28 -2.39 -0.02 0.48 16 26 H 0.05 0.80 7.33 -2.39 -0.02 0.78 16 27 H 0.07 0.85 7.92 -2.39 -0.02 0.83 16 28 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 29 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 30 H 0.11 1.03 8.05 -2.38 -0.02 1.01 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.62 6.96 -2.39 -0.02 0.60 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 35 H 0.06 1.39 6.06 -2.38 -0.01 1.37 16 36 H 0.41 6.30 8.49 -92.70 -0.79 5.52 16 37 H 0.41 8.86 8.49 -92.71 -0.79 8.07 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 44 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -72.02 358.31 1.75 -70.27 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -0.60 Total: 16.20 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.41 Total: -6.17 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -5.02 Total: -99.53 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.07 Total: -26.79 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.02 1.75 -70.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883326048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.558 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds