Wall clock time and date at job start Mon Mar 30 2020 00:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47284 * 2 1 4 4 C 1.35311 * 125.86751 * 124.99713 * 3 2 1 5 5 C 1.35348 * 106.17645 * 180.20763 * 4 3 2 6 6 C 1.50704 * 126.75214 * 179.77932 * 5 4 3 7 7 N 1.46900 * 109.47118 * 95.00035 * 6 5 4 8 8 C 1.46901 * 110.99789 * 189.99994 * 7 6 5 9 9 C 1.50698 * 109.47194 * 175.73564 * 8 7 6 10 10 H 1.08000 * 119.99757 * 354.88148 * 9 8 7 11 11 C 1.37880 * 120.00398 * 174.87915 * 9 8 7 12 12 N 1.31515 * 119.99600 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00148 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47145 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47497 * 120.00071 * 13 11 9 16 16 H 1.48505 * 109.47117 * 240.00058 * 13 11 9 17 17 C 1.46900 * 110.99810 * 66.04598 * 7 6 5 18 18 C 1.53002 * 109.47155 * 53.95618 * 17 7 6 19 19 O 1.42897 * 109.46968 * 67.05496 * 18 17 7 20 20 C 1.42906 * 113.99704 * 179.97438 * 19 18 17 21 21 N 1.33776 * 106.49663 * 359.64658 * 5 4 3 22 22 N 1.28630 * 108.88158 * 0.36289 * 21 5 4 23 23 H 1.09001 * 109.47115 * 59.99716 * 1 2 3 24 24 H 1.08994 * 109.47281 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47250 * 299.99929 * 1 2 3 26 26 H 1.09001 * 109.46993 * 240.00533 * 2 1 3 27 27 H 1.09001 * 109.47115 * 120.00284 * 2 1 3 28 28 H 1.07999 * 126.91448 * 359.94993 * 4 3 2 29 29 H 1.09001 * 109.46890 * 214.99847 * 6 5 4 30 30 H 1.08998 * 109.47260 * 334.99774 * 6 5 4 31 31 H 1.08999 * 109.46871 * 295.73527 * 8 7 6 32 32 H 1.08994 * 109.47117 * 55.73567 * 8 7 6 33 33 H 0.96997 * 119.99718 * 179.97438 * 12 11 9 34 34 H 1.09005 * 109.46593 * 173.95488 * 17 7 6 35 35 H 1.08996 * 109.47079 * 293.94934 * 17 7 6 36 36 H 1.08998 * 109.46948 * 187.05373 * 18 17 7 37 37 H 1.09001 * 109.46822 * 307.05231 * 18 17 7 38 38 H 1.09003 * 109.46991 * 300.00076 * 20 19 18 39 39 H 1.08999 * 109.47097 * 59.99909 * 20 19 18 40 40 H 1.09003 * 109.46886 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9190 0.8983 5 6 3.0501 3.2089 0.5274 6 6 3.9142 4.2355 1.2135 7 7 5.2313 4.2795 0.5646 8 6 6.1759 5.0897 1.3451 9 6 7.5394 5.0263 0.7064 10 1 7.7092 4.3781 -0.1406 11 6 8.5700 5.7958 1.2032 12 7 8.3632 6.5848 2.2349 13 14 10.2597 5.7177 0.4110 14 1 10.2306 4.7604 -0.7240 15 1 10.6359 7.0652 -0.0869 16 1 11.2564 5.2648 1.4144 17 6 5.1230 4.7783 -0.8129 18 6 4.3985 6.1260 -0.8118 19 8 5.2132 7.1042 -0.1629 20 6 4.6260 8.4059 -0.1081 21 7 2.3072 3.3926 -0.5698 22 7 1.7061 2.2916 -0.8546 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.3262 1.4206 1.7437 29 1 3.4410 5.2148 1.1421 30 1 4.0349 3.9659 2.2627 31 1 5.8337 6.1243 1.3692 32 1 6.2328 4.7021 2.3623 33 1 9.0883 7.1258 2.5846 34 1 6.1208 4.9026 -1.2338 35 1 4.5612 4.0642 -1.4148 36 1 4.2069 6.4362 -1.8390 37 1 3.4525 6.0294 -0.2790 38 1 4.4394 8.7632 -1.1208 39 1 3.6846 8.3570 0.4391 40 1 5.3059 9.0901 0.3996 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884004027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:32 Heat of formation + Delta-G solvation = 70.572910 kcal Electronic energy + Delta-G solvation = -21146.091549 eV Core-core repulsion = 17999.314980 eV Total energy + Delta-G solvation = -3146.776569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.01503 -38.04456 -35.92324 -35.15624 -32.51110 -31.19391 -30.78161 -28.82999 -27.19964 -25.75061 -24.68903 -24.45647 -22.51552 -21.60783 -20.80539 -19.28074 -17.20706 -16.37746 -16.15659 -15.80792 -15.70010 -14.87811 -14.56468 -14.44936 -14.23570 -13.85728 -13.64636 -13.28459 -12.73108 -12.52505 -12.20681 -11.82181 -11.77506 -11.51897 -11.33928 -11.15606 -10.93429 -10.88802 -10.60827 -10.53878 -10.44897 -10.00520 -9.82140 -9.73496 -9.06418 -8.85512 -8.75230 -8.21185 -6.96629 -5.82189 -3.79074 1.80982 2.43514 2.82740 3.41991 3.49026 3.53882 4.25531 4.54590 4.57669 4.61137 4.66604 4.79832 5.11312 5.21222 5.28230 5.38826 5.42086 5.55095 5.66801 5.77112 5.80811 5.84399 5.95079 6.04101 6.13080 6.18600 6.27917 6.43326 6.45752 6.54212 6.75405 6.98392 7.44913 7.86961 7.96367 8.03493 8.23002 8.41646 8.76023 8.76693 9.26674 9.81583 11.29405 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.004871 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.447273 B = 5746.403400 C = 6432.059561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.298 5.298 4 C -0.041 4.041 5 C 0.005 3.995 6 C 0.128 3.872 7 N -0.528 5.528 8 C 0.181 3.819 9 C -0.490 4.490 10 H 0.057 0.943 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.889 3.111 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.287 1.287 17 C 0.068 3.932 18 C 0.027 3.973 19 O -0.347 6.347 20 C 0.029 3.971 21 N -0.266 5.266 22 N -0.096 5.096 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.188 0.812 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.017 0.983 33 H 0.256 0.744 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.047 0.953 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.569 -9.834 -2.200 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.093 5.093 4 C -0.191 4.191 5 C -0.133 4.133 6 C -0.002 4.002 7 N -0.252 5.252 8 C 0.057 3.943 9 C -0.529 4.529 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.538 5.538 13 Si 0.718 3.282 14 H -0.199 1.199 15 H -0.213 1.213 16 H -0.214 1.214 17 C -0.061 4.061 18 C -0.051 4.051 19 O -0.265 6.265 20 C -0.068 4.068 21 N -0.134 5.134 22 N -0.075 5.075 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.205 0.795 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.925 -9.944 -3.285 18.233 hybrid contribution 0.975 0.494 0.514 1.208 sum -13.951 -9.450 -2.770 17.076 Atomic orbital electron populations 1.22067 0.93012 1.03378 1.03954 1.21999 0.96592 0.77057 1.05046 1.47345 1.31105 1.11687 1.19207 1.23375 1.00062 0.95675 1.00036 1.22132 1.00649 0.94905 0.95661 1.20365 0.89427 0.93794 0.96621 1.62364 1.05777 1.54699 1.02357 1.20053 0.89752 0.92575 0.91927 1.21072 0.94010 1.23033 1.14739 0.92476 1.24857 0.98530 0.95518 0.95285 1.69969 1.31925 1.27345 1.24548 0.86581 0.84793 0.77548 0.79249 1.19946 1.21339 1.21393 1.22122 1.01374 0.90588 0.91993 1.23280 0.94962 0.91385 0.95483 1.88441 1.42997 1.17108 1.77981 1.22652 0.98040 0.87040 0.99082 1.75040 1.08968 1.15812 1.13536 1.78171 1.21339 0.93110 1.14921 0.90762 0.90167 0.91817 0.88589 0.87838 0.79495 0.93388 0.89871 0.94256 0.96461 0.93461 0.89066 0.91487 0.94731 0.93485 0.95415 0.95345 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.04 37.16 0.37 -0.69 16 2 C 0.11 0.84 7.17 -4.04 -0.03 0.81 16 3 N -0.30 -3.76 3.44 -61.26 -0.21 -3.97 16 4 C -0.04 -0.56 11.50 -17.05 -0.20 -0.75 16 5 C 0.00 0.08 5.97 -82.77 -0.49 -0.42 16 6 C 0.13 2.38 5.17 -4.97 -0.03 2.35 16 7 N -0.53 -11.62 4.74 -237.52 -1.13 -12.75 16 8 C 0.18 4.73 4.29 -4.98 -0.02 4.71 16 9 C -0.49 -13.94 8.21 -34.44 -0.28 -14.22 16 10 H 0.06 1.64 6.98 -52.49 -0.37 1.27 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 13 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 14 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 17 C 0.07 1.45 5.42 -3.82 -0.02 1.42 16 18 C 0.03 0.54 5.69 37.16 0.21 0.75 16 19 O -0.35 -7.76 7.58 -35.23 -0.27 -8.02 16 20 C 0.03 0.52 11.01 101.05 1.11 1.63 16 21 N -0.27 -4.76 11.60 33.29 0.39 -4.37 16 22 N -0.10 -1.53 12.91 60.35 0.78 -0.75 16 23 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 24 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 0.49 8.07 -51.93 -0.42 0.07 16 28 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.05 0.92 5.71 -51.93 -0.30 0.63 16 30 H 0.08 1.44 8.01 -51.93 -0.42 1.02 16 31 H 0.04 1.11 5.29 -51.93 -0.27 0.83 16 32 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 34 H 0.09 2.14 6.33 -51.93 -0.33 1.81 16 35 H 0.07 1.37 6.89 -51.93 -0.36 1.01 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.91 5.80 -51.93 -0.30 0.61 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -33.91 326.97 -5.38 -39.29 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.12 Total: -2.53 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 0.53 Total: -2.81 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.57 Total: -48.10 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.27 Total: -8.02 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.91 -5.38 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884004027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.861 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds