Wall clock time and date at job start Mon Mar 30 2020 00:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47284 * 2 1 4 4 C 1.35311 * 125.86751 * 124.99713 * 3 2 1 5 5 C 1.35348 * 106.17645 * 180.20763 * 4 3 2 6 6 C 1.50704 * 126.75214 * 179.77932 * 5 4 3 7 7 N 1.46900 * 109.47118 * 95.00035 * 6 5 4 8 8 C 1.46901 * 110.99789 * 189.99994 * 7 6 5 9 9 C 1.50698 * 109.47194 * 175.73564 * 8 7 6 10 10 H 1.08000 * 119.99757 * 354.88148 * 9 8 7 11 11 C 1.37880 * 120.00398 * 174.87915 * 9 8 7 12 12 N 1.31515 * 119.99600 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00148 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47145 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47497 * 120.00071 * 13 11 9 16 16 H 1.48505 * 109.47117 * 240.00058 * 13 11 9 17 17 C 1.46900 * 110.99810 * 66.04598 * 7 6 5 18 18 C 1.53002 * 109.47155 * 53.95618 * 17 7 6 19 19 O 1.42897 * 109.46968 * 67.05496 * 18 17 7 20 20 C 1.42906 * 113.99704 * 179.97438 * 19 18 17 21 21 N 1.33776 * 106.49663 * 359.64658 * 5 4 3 22 22 N 1.28630 * 108.88158 * 0.36289 * 21 5 4 23 23 H 1.09001 * 109.47115 * 59.99716 * 1 2 3 24 24 H 1.08994 * 109.47281 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47250 * 299.99929 * 1 2 3 26 26 H 1.09001 * 109.46993 * 240.00533 * 2 1 3 27 27 H 1.09001 * 109.47115 * 120.00284 * 2 1 3 28 28 H 1.07999 * 126.91448 * 359.94993 * 4 3 2 29 29 H 1.09001 * 109.46890 * 214.99847 * 6 5 4 30 30 H 1.08998 * 109.47260 * 334.99774 * 6 5 4 31 31 H 1.08999 * 109.46871 * 295.73527 * 8 7 6 32 32 H 1.08994 * 109.47117 * 55.73567 * 8 7 6 33 33 H 0.96997 * 119.99718 * 179.97438 * 12 11 9 34 34 H 1.09005 * 109.46593 * 173.95488 * 17 7 6 35 35 H 1.08996 * 109.47079 * 293.94934 * 17 7 6 36 36 H 1.08998 * 109.46948 * 187.05373 * 18 17 7 37 37 H 1.09001 * 109.46822 * 307.05231 * 18 17 7 38 38 H 1.09003 * 109.46991 * 300.00076 * 20 19 18 39 39 H 1.08999 * 109.47097 * 59.99909 * 20 19 18 40 40 H 1.09003 * 109.46886 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9190 0.8983 5 6 3.0501 3.2089 0.5274 6 6 3.9142 4.2355 1.2135 7 7 5.2313 4.2795 0.5646 8 6 6.1759 5.0897 1.3451 9 6 7.5394 5.0263 0.7064 10 1 7.7092 4.3781 -0.1406 11 6 8.5700 5.7958 1.2032 12 7 8.3632 6.5848 2.2349 13 14 10.2597 5.7177 0.4110 14 1 10.2306 4.7604 -0.7240 15 1 10.6359 7.0652 -0.0869 16 1 11.2564 5.2648 1.4144 17 6 5.1230 4.7783 -0.8129 18 6 4.3985 6.1260 -0.8118 19 8 5.2132 7.1042 -0.1629 20 6 4.6260 8.4059 -0.1081 21 7 2.3072 3.3926 -0.5698 22 7 1.7061 2.2916 -0.8546 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.3262 1.4206 1.7437 29 1 3.4410 5.2148 1.1421 30 1 4.0349 3.9659 2.2627 31 1 5.8337 6.1243 1.3692 32 1 6.2328 4.7021 2.3623 33 1 9.0883 7.1258 2.5846 34 1 6.1208 4.9026 -1.2338 35 1 4.5612 4.0642 -1.4148 36 1 4.2069 6.4362 -1.8390 37 1 3.4525 6.0294 -0.2790 38 1 4.4394 8.7632 -1.1208 39 1 3.6846 8.3570 0.4391 40 1 5.3059 9.0901 0.3996 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884004027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:31 Heat of formation + Delta-G solvation = 45.578913 kcal Electronic energy + Delta-G solvation = -21147.175370 eV Core-core repulsion = 17999.314980 eV Total energy + Delta-G solvation = -3147.860390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.13544 -39.70355 -37.43384 -36.20028 -34.59184 -32.54379 -31.62717 -30.56454 -28.94677 -27.24656 -26.21252 -25.46474 -24.31733 -22.85204 -22.05233 -20.80116 -18.43066 -18.00740 -17.56787 -17.39636 -17.19218 -16.57390 -15.89845 -15.77568 -15.56818 -15.37108 -15.02906 -14.50296 -14.08610 -13.57652 -13.52420 -13.30990 -13.07633 -12.89416 -12.78762 -12.65518 -12.53974 -12.42618 -12.40163 -12.26018 -11.81109 -11.67270 -11.62914 -11.10890 -10.89829 -10.54519 -10.30755 -10.05202 -8.75917 -8.02643 -6.06358 0.74265 1.43853 1.44958 1.53539 1.57583 1.60931 2.50933 3.05647 3.31863 3.37884 3.64832 3.74448 4.02057 4.03702 4.22043 4.23451 4.33559 4.40458 4.49382 4.51866 4.55926 4.60066 4.67028 4.78153 4.81311 4.85676 4.91477 5.04337 5.14473 5.23676 5.29982 5.46547 5.76001 5.81078 5.83552 6.23270 6.42408 6.47887 6.78813 7.08212 7.58498 7.60434 9.08797 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.004871 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.447273 B = 5746.403400 C = 6432.059561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.286 5.286 4 C -0.023 4.023 5 C -0.024 4.024 6 C 0.135 3.865 7 N -0.532 5.532 8 C 0.197 3.803 9 C -0.500 4.500 10 H 0.049 0.951 11 C 0.009 3.991 12 N -0.929 5.929 13 Si 0.954 3.046 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.280 1.280 17 C 0.076 3.924 18 C 0.035 3.965 19 O -0.387 6.387 20 C 0.026 3.974 21 N -0.298 5.298 22 N -0.115 5.115 23 H 0.054 0.946 24 H 0.111 0.889 25 H 0.055 0.945 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.223 0.777 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.021 0.979 32 H -0.005 1.005 33 H 0.258 0.742 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.065 -11.597 -2.421 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.081 5.081 4 C -0.175 4.175 5 C -0.163 4.163 6 C 0.006 3.994 7 N -0.255 5.255 8 C 0.072 3.928 9 C -0.539 4.539 10 H 0.067 0.933 11 C -0.189 4.189 12 N -0.571 5.571 13 Si 0.780 3.220 14 H -0.194 1.194 15 H -0.211 1.211 16 H -0.205 1.205 17 C -0.053 4.053 18 C -0.043 4.043 19 O -0.306 6.306 20 C -0.070 4.070 21 N -0.165 5.165 22 N -0.094 5.094 23 H 0.073 0.927 24 H 0.129 0.871 25 H 0.075 0.925 26 H 0.127 0.873 27 H 0.157 0.843 28 H 0.239 0.761 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.039 0.961 32 H 0.013 0.987 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.458 -11.733 -3.531 19.725 hybrid contribution 1.022 0.952 0.590 1.516 sum -14.436 -10.782 -2.942 18.256 Atomic orbital electron populations 1.22050 0.92307 1.04958 1.02586 1.22571 0.97220 0.74489 1.07480 1.47787 1.29762 1.12829 1.17700 1.23814 0.98872 0.94594 1.00252 1.21913 1.01822 0.95993 0.96567 1.20252 0.87787 0.94261 0.97127 1.62233 1.07267 1.53638 1.02398 1.19671 0.90045 0.91973 0.91113 1.21317 0.95358 1.22772 1.14447 0.93250 1.25625 1.02239 0.95205 0.95790 1.70083 1.33110 1.28089 1.25770 0.85575 0.80323 0.77569 0.78522 1.19414 1.21056 1.20543 1.21971 1.00002 0.91816 0.91507 1.23191 0.94440 0.90377 0.96262 1.88359 1.44615 1.19014 1.78599 1.22785 0.98355 0.85187 1.00708 1.74969 1.09936 1.17197 1.14382 1.78082 1.21860 0.93421 1.16020 0.92729 0.87092 0.92547 0.87267 0.84333 0.76059 0.94377 0.88912 0.96142 0.98663 0.93324 0.91820 0.90613 0.93144 0.92965 0.93140 0.93880 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.04 71.98 0.72 -0.91 16 2 C 0.10 1.14 7.17 86.38 0.62 1.76 16 3 N -0.29 -6.54 3.44 -347.74 -1.20 -7.73 16 4 C -0.02 -0.58 11.50 83.49 0.96 0.38 16 5 C -0.02 -0.79 5.97 41.60 0.25 -0.55 16 6 C 0.14 5.03 5.17 85.56 0.44 5.47 16 7 N -0.53 -23.67 4.74 -905.36 -4.29 -27.96 16 8 C 0.20 10.56 4.29 85.56 0.37 10.93 16 9 C -0.50 -28.95 8.21 25.60 0.21 -28.74 16 10 H 0.05 2.88 6.98 -2.91 -0.02 2.86 16 11 C 0.01 0.51 5.46 84.66 0.46 0.97 16 12 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 13 Si 0.95 45.96 29.54 68.60 2.03 47.99 16 14 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 17 C 0.08 3.26 5.42 86.30 0.47 3.73 16 18 C 0.04 1.41 5.69 71.98 0.41 1.82 16 19 O -0.39 -17.51 7.58 -148.98 -1.13 -18.64 16 20 C 0.03 0.92 11.01 113.37 1.25 2.17 16 21 N -0.30 -10.50 11.60 -48.60 -0.56 -11.07 16 22 N -0.11 -3.53 12.91 37.02 0.48 -3.05 16 23 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 24 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.14 0.64 8.07 -2.39 -0.02 0.62 16 28 H 0.22 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.04 1.49 5.71 -2.39 -0.01 1.47 16 30 H 0.09 3.19 8.01 -2.39 -0.02 3.17 16 31 H 0.02 1.21 5.29 -2.39 -0.01 1.19 16 32 H 0.00 -0.26 8.05 -2.39 -0.02 -0.28 16 33 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.06 3.07 6.33 -2.38 -0.02 3.05 16 35 H 0.08 3.11 6.89 -2.39 -0.02 3.09 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 2.03 5.80 -2.39 -0.01 2.02 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -74.42 326.97 2.79 -71.63 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.02 Total: 8.14 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 6.16 Total: -2.97 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -5.29 Total: -106.15 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.13 Total: -18.64 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -74.42 2.79 -71.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884004027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.210 kcal (2) G-P(sol) polarization free energy of solvation -74.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds