Wall clock time and date at job start Mon Mar 30 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47096 * 2 1 4 4 H 1.09002 * 110.02007 * 304.11452 * 3 2 1 5 5 C 1.54260 * 110.03801 * 65.50966 * 3 2 1 6 6 C 1.54889 * 104.20158 * 142.89085 * 5 3 2 7 7 C 1.54886 * 102.74441 * 322.06053 * 6 5 3 8 8 C 1.53884 * 110.03060 * 182.67490 * 3 2 1 9 9 C 1.52997 * 110.03277 * 121.43039 * 8 3 2 10 10 C 1.50696 * 110.02940 * 359.97438 * 8 3 2 11 11 O 1.20824 * 120.00036 * 112.03680 * 10 8 3 12 12 O 1.34236 * 120.00015 * 292.03025 * 10 8 3 13 13 C 1.45201 * 116.99773 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.46753 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47078 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47450 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99766 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00392 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99920 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47504 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.46993 * 119.99548 * 20 18 16 23 23 H 1.48493 * 109.47152 * 239.99289 * 20 18 16 24 24 H 1.09001 * 109.47402 * 300.00557 * 1 2 3 25 25 H 1.09011 * 109.46715 * 59.99989 * 1 2 3 26 26 H 1.09000 * 109.47669 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46924 * 239.99643 * 2 1 3 28 28 H 1.09004 * 109.46317 * 119.99957 * 2 1 3 29 29 H 1.09006 * 110.48350 * 261.57199 * 5 3 2 30 30 H 1.09000 * 110.48565 * 24.21259 * 5 3 2 31 31 H 1.09001 * 110.75103 * 80.37373 * 6 5 3 32 32 H 1.08993 * 110.75540 * 203.74108 * 6 5 3 33 33 H 1.08998 * 110.48370 * 156.62158 * 7 6 5 34 34 H 1.09005 * 110.48353 * 279.25471 * 7 6 5 35 35 H 1.08995 * 109.47770 * 60.00070 * 9 8 3 36 36 H 1.08998 * 109.47136 * 180.02562 * 9 8 3 37 37 H 1.09004 * 109.46647 * 299.99894 * 9 8 3 38 38 H 1.09000 * 109.47571 * 300.00477 * 13 12 10 39 39 H 1.08997 * 109.47174 * 60.00964 * 13 12 10 40 40 H 1.09000 * 109.47224 * 300.00386 * 14 13 12 41 41 H 1.09005 * 109.47370 * 60.00461 * 14 13 12 42 42 H 1.09000 * 109.47371 * 300.00250 * 15 14 13 43 43 H 1.09001 * 109.47168 * 60.00039 * 15 14 13 44 44 H 0.96998 * 120.00459 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6228 1.9857 -0.8479 5 6 1.6498 2.1410 1.3188 6 6 2.8663 3.0422 1.6459 7 6 4.0673 2.1654 1.2127 8 6 3.5773 1.4580 -0.0675 9 6 4.0398 2.2318 -1.3036 10 6 4.1062 0.0476 -0.1121 11 8 4.6428 -0.3649 -1.1129 12 8 3.9814 -0.7503 0.9601 13 6 4.5145 -2.0961 0.8459 14 6 4.2807 -2.8500 2.1566 15 6 4.8430 -4.2679 2.0366 16 6 4.6122 -5.0108 3.3273 17 1 4.1146 -4.5205 4.1510 18 6 5.0372 -6.3160 3.4570 19 7 5.6435 -6.9129 2.4542 20 14 4.7517 -7.2365 5.0571 21 1 4.0548 -6.3483 6.0218 22 1 3.9164 -8.4363 4.7958 23 1 6.0573 -7.6569 5.6261 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8901 29 1 0.7535 2.7457 1.1796 30 1 1.4962 1.4060 2.1089 31 1 2.8314 3.9639 1.0649 32 1 2.9109 3.2586 2.7132 33 1 4.9355 2.7878 0.9961 34 1 4.3043 1.4344 1.9858 35 1 3.6733 3.2568 -1.2490 36 1 5.1291 2.2367 -1.3426 37 1 3.6466 1.7526 -2.2003 38 1 4.0116 -2.6183 0.0320 39 1 5.5838 -2.0471 0.6404 40 1 4.7833 -2.3279 2.9708 41 1 3.2113 -2.8991 2.3619 42 1 4.3407 -4.7902 1.2224 43 1 5.9124 -4.2185 1.8316 44 1 5.9421 -7.8312 2.5452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885059745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:27 Heat of formation + Delta-G solvation = -148.128486 kcal Electronic energy + Delta-G solvation = -21375.940020 eV Core-core repulsion = 18290.927439 eV Total energy + Delta-G solvation = -3085.012580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.16879 -39.45881 -37.83437 -35.94961 -34.31140 -33.69655 -32.19720 -29.18453 -28.55210 -27.04872 -25.27594 -23.71300 -23.05015 -22.20299 -21.28968 -20.20803 -18.73394 -18.26985 -17.66357 -17.18861 -16.51341 -16.34235 -15.79534 -15.47950 -15.17452 -14.61802 -14.42562 -14.08394 -13.93139 -13.85571 -13.53685 -13.40975 -13.38019 -12.92960 -12.86168 -12.56659 -12.52324 -12.39201 -12.22205 -11.98900 -11.86043 -11.69818 -11.61433 -11.53219 -11.47094 -11.33509 -11.31825 -11.22620 -11.08555 -10.59915 -8.23394 -6.35266 1.15351 1.40559 1.40930 1.54465 1.65661 2.40317 3.10595 3.40813 3.49556 3.53414 3.90458 3.94901 4.03403 4.14800 4.20101 4.33581 4.37237 4.42397 4.47243 4.54996 4.72076 4.73947 4.75718 4.81634 4.85357 4.89511 4.97942 5.04556 5.06038 5.11833 5.13646 5.23886 5.25866 5.29235 5.37243 5.39255 5.44202 5.52732 5.57806 5.60240 5.77731 6.16930 6.71005 6.80868 7.34537 8.89232 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.003838 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.695074 B = 7293.598184 C = 7532.789388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C -0.071 4.071 4 H 0.101 0.899 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.057 4.057 9 C -0.126 4.126 10 C 0.468 3.532 11 O -0.549 6.549 12 O -0.349 6.349 13 C 0.077 3.923 14 C -0.090 4.090 15 C 0.026 3.974 16 C -0.542 4.542 17 H 0.066 0.934 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.066 0.934 42 H -0.005 1.005 43 H -0.005 1.005 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 23.309 -3.196 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C -0.090 4.090 4 H 0.119 0.881 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.156 4.156 8 C -0.058 4.058 9 C -0.183 4.183 10 C 0.313 3.687 11 O -0.440 6.440 12 O -0.265 6.265 13 C 0.003 3.997 14 C -0.127 4.127 15 C -0.011 4.011 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.183 1.183 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.022 22.991 -3.527 24.948 hybrid contribution 0.535 -1.557 0.120 1.651 sum -8.487 21.434 -3.407 23.303 Atomic orbital electron populations 1.21708 0.93634 1.01739 1.02900 1.21964 0.98180 0.96549 1.00984 1.21927 0.89787 0.96158 1.01082 0.88056 1.22477 0.99086 0.98482 0.95207 1.22481 0.92373 0.97910 1.02216 1.22579 1.00073 0.98955 0.93998 1.21575 0.97946 0.85922 1.00339 1.21795 1.01427 1.00587 0.94445 1.24440 0.74637 0.89510 0.80109 1.90621 1.42518 1.76739 1.34102 1.86542 1.73278 1.25334 1.41335 1.23067 0.98029 0.78844 0.99780 1.21421 1.01731 0.95145 0.94434 1.18937 0.94817 0.91029 0.96361 1.21637 1.38212 0.98080 1.00059 0.91626 1.26021 0.94600 0.98729 1.00528 1.70108 1.40638 1.13293 1.33419 0.85325 0.78064 0.78309 0.78914 1.18283 1.20348 1.20349 0.91005 0.91665 0.93527 0.95045 0.91621 0.89080 0.91886 0.89236 0.90137 0.89685 0.91720 0.87892 0.92802 0.92764 0.92598 0.92464 0.91479 0.91533 0.98701 0.98655 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.74 71.98 0.70 -1.93 16 2 C -0.14 -3.28 4.06 30.59 0.12 -3.16 16 3 C -0.07 -1.30 2.61 -10.07 -0.03 -1.32 16 4 H 0.10 1.49 7.67 -2.39 -0.02 1.47 16 5 C -0.12 -1.62 5.42 31.67 0.17 -1.45 16 6 C -0.11 -1.39 6.91 31.88 0.22 -1.17 16 7 C -0.12 -2.14 5.86 31.67 0.19 -1.96 16 8 C -0.06 -1.24 0.89 -52.21 -0.05 -1.28 16 9 C -0.13 -2.33 7.48 71.98 0.54 -1.79 16 10 C 0.47 14.90 4.76 71.23 0.34 15.24 16 11 O -0.55 -21.10 15.81 21.97 0.35 -20.75 16 12 O -0.35 -11.92 7.35 -51.47 -0.38 -12.29 16 13 C 0.08 3.00 5.47 71.98 0.39 3.40 16 14 C -0.09 -3.83 5.53 30.59 0.17 -3.67 16 15 C 0.03 1.39 4.97 29.85 0.15 1.54 16 16 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 17 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 18 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 19 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 20 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H 0.07 1.12 7.43 -2.39 -0.02 1.10 16 25 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.03 0.88 7.36 -2.39 -0.02 0.86 16 28 H 0.07 1.83 6.09 -2.38 -0.01 1.82 16 29 H 0.09 0.90 8.14 -2.38 -0.02 0.89 16 30 H 0.06 1.06 7.80 -2.39 -0.02 1.05 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.32 7.84 -2.39 -0.02 1.30 16 34 H 0.06 1.43 7.26 -2.38 -0.02 1.41 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.12 8.06 -2.38 -0.02 1.10 16 38 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 39 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 40 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 41 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -68.39 346.97 6.83 -61.57 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.93 Total: 10.33 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 3.61 Total: -27.96 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.28 Total: -57.19 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.03 Total: -33.05 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.39 6.83 -61.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885059745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.561 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds