Wall clock time and date at job start Mon Mar 30 2020 00:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09000 * 110.01718 * 306.38553 * 3 2 1 5 5 C 1.54258 * 110.03570 * 67.83449 * 3 2 1 6 6 C 1.54889 * 104.20088 * 95.67381 * 5 3 2 7 7 C 1.54886 * 102.74428 * 37.94130 * 6 5 3 8 8 C 1.53883 * 110.02908 * 185.00080 * 3 2 1 9 9 C 1.52997 * 110.03358 * 359.97438 * 8 3 2 10 10 C 1.50702 * 110.02999 * 121.43022 * 8 3 2 11 11 O 1.20823 * 119.99996 * 359.97438 * 10 8 3 12 12 O 1.34233 * 119.99748 * 180.02562 * 10 8 3 13 13 C 1.45197 * 116.99971 * 180.02562 * 12 10 8 14 14 C 1.52995 * 109.47126 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47345 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47317 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00076 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00233 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99549 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00304 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47505 * 89.99889 * 20 18 16 22 22 H 1.48499 * 109.47266 * 210.00350 * 20 18 16 23 23 H 1.48508 * 109.47185 * 329.99969 * 20 18 16 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09000 * 110.48665 * 214.35316 * 5 3 2 30 30 H 1.09006 * 110.48437 * 336.99407 * 5 3 2 31 31 H 1.09000 * 110.75249 * 279.63312 * 6 5 3 32 32 H 1.08992 * 110.91852 * 156.33180 * 6 5 3 33 33 H 1.09003 * 110.48788 * 203.38398 * 7 6 5 34 34 H 1.09001 * 110.60013 * 80.79918 * 7 6 5 35 35 H 1.09005 * 109.47333 * 59.99723 * 9 8 3 36 36 H 1.09001 * 109.47130 * 180.02562 * 9 8 3 37 37 H 1.09005 * 109.46947 * 300.00317 * 9 8 3 38 38 H 1.09004 * 109.46847 * 299.99863 * 13 12 10 39 39 H 1.08995 * 109.47541 * 59.99599 * 13 12 10 40 40 H 1.09004 * 109.47347 * 299.99803 * 14 13 12 41 41 H 1.09009 * 109.47215 * 59.99593 * 14 13 12 42 42 H 1.09004 * 109.46964 * 300.00315 * 15 14 13 43 43 H 1.08995 * 109.47205 * 59.99917 * 15 14 13 44 44 H 0.96997 * 119.99416 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9968 -0.8245 5 6 1.7006 2.1230 1.3421 6 6 2.9863 1.9545 2.1894 7 6 4.1124 2.1496 1.1440 8 6 3.5735 1.4593 -0.1260 9 6 4.1081 0.0284 -0.2112 10 6 3.9824 2.2380 -1.3498 11 8 3.1398 2.7347 -2.0591 12 8 5.2826 2.3789 -1.6522 13 6 5.6029 3.1421 -2.8452 14 6 7.1214 3.1943 -3.0247 15 6 7.4590 3.9979 -4.2822 16 6 8.9546 4.0488 -4.4594 17 1 9.6000 3.5575 -3.7462 18 6 9.4993 4.7226 -5.5319 19 7 8.7134 5.3205 -6.4007 20 14 11.3532 4.7851 -5.7520 21 1 11.7935 3.6287 -6.5730 22 1 11.7282 6.0490 -6.4355 23 1 12.0117 4.7274 -4.4222 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.4803 3.1795 1.1892 30 1 0.8594 1.6225 1.8217 31 1 3.0331 0.9568 2.6259 32 1 3.0435 2.7173 2.9657 33 1 5.0313 1.6684 1.4789 34 1 4.2839 3.2099 0.9584 35 1 3.6824 -0.4673 -1.0837 36 1 5.1943 0.0510 -0.2997 37 1 3.8286 -0.5182 0.6895 38 1 5.1501 2.6648 -3.7143 39 1 5.2144 4.1554 -2.7436 40 1 7.5739 3.6718 -2.1556 41 1 7.5103 2.1811 -3.1262 42 1 7.0065 3.5201 -5.1511 43 1 7.0700 5.0111 -4.1811 44 1 9.0966 5.7949 -7.1550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885059746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:30 Heat of formation + Delta-G solvation = -129.593592 kcal Electronic energy + Delta-G solvation = -20904.738960 eV Core-core repulsion = 17820.530113 eV Total energy + Delta-G solvation = -3084.208847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94858 -38.74997 -36.27770 -34.00944 -33.31032 -31.97775 -31.43669 -27.83000 -27.17494 -25.88511 -24.07193 -23.08658 -21.68230 -20.44309 -20.25937 -18.50669 -17.38169 -16.83333 -16.24301 -16.07429 -15.78380 -14.70850 -14.47045 -14.18283 -13.92342 -13.70630 -13.56929 -13.20757 -12.69833 -12.45225 -12.25282 -12.07328 -11.87629 -11.80831 -11.63828 -11.50323 -11.13970 -10.96772 -10.89181 -10.83827 -10.65437 -10.59000 -10.54414 -10.44462 -10.35131 -10.06870 -9.70768 -9.46793 -9.15703 -8.38535 -6.03338 -4.06358 2.40036 2.92049 3.31035 3.37159 3.40751 4.16874 4.29248 4.42908 4.51388 4.91061 4.95354 4.95978 5.03467 5.07590 5.19991 5.25406 5.32573 5.40666 5.45433 5.55814 5.59516 5.62554 5.65400 5.66699 5.72327 5.76466 5.81685 5.90546 5.92899 6.03017 6.07865 6.10428 6.16055 6.29073 6.55213 6.55832 6.88105 7.00169 7.60684 7.71845 7.94935 8.00207 8.36393 8.99941 9.57863 11.08163 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040207 B = 0.003122 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.236332 B = 8965.862557 C = 9170.185403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.088 4.088 4 H 0.097 0.903 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.110 4.110 8 C -0.053 4.053 9 C -0.140 4.140 10 C 0.466 3.534 11 O -0.512 6.512 12 O -0.354 6.354 13 C 0.067 3.933 14 C -0.108 4.108 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.399 -10.531 17.280 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.106 4.106 4 H 0.115 0.885 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.147 4.147 8 C -0.054 4.054 9 C -0.197 4.197 10 C 0.309 3.691 11 O -0.400 6.400 12 O -0.270 6.270 13 C -0.006 4.006 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.610 -10.255 16.864 24.556 hybrid contribution 0.972 0.276 -0.503 1.128 sum -13.638 -9.980 16.361 23.522 Atomic orbital electron populations 1.21844 0.95918 1.01409 1.01981 1.21716 0.95688 0.95841 1.02191 1.21915 0.91775 0.97314 0.99624 0.88496 1.22476 0.97809 1.00733 0.94822 1.22493 0.94399 1.01827 0.97286 1.22422 0.98865 1.00890 0.92568 1.21166 0.96868 0.96050 0.91339 1.21987 1.01895 0.93121 1.02735 1.23529 0.81250 0.78186 0.86172 1.90609 1.52243 1.46364 1.50827 1.86501 1.26411 1.67922 1.46155 1.23491 0.99129 0.94501 0.83504 1.21751 0.89382 1.01878 1.01550 1.19051 0.96844 0.94813 0.90620 1.21176 0.91684 1.33488 1.09597 0.92433 1.25037 0.98217 0.95383 0.95867 1.69973 1.34826 1.34791 1.13790 0.86542 0.85431 0.77444 0.78289 1.20609 1.21186 1.19805 0.92609 0.92645 0.92871 0.91475 0.91643 0.91483 0.90959 0.91208 0.91206 0.90121 0.91039 0.91794 0.91217 0.90909 0.91644 0.91665 0.92184 0.92188 0.96268 0.96264 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.75 37.16 0.36 -0.81 16 2 C -0.12 -0.98 4.16 -26.73 -0.11 -1.10 16 3 C -0.09 -0.91 2.53 -89.50 -0.23 -1.13 16 4 H 0.10 1.25 6.40 -51.93 -0.33 0.92 16 5 C -0.12 -1.04 6.21 -25.08 -0.16 -1.19 16 6 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 7 C -0.11 -1.10 5.88 -25.07 -0.15 -1.25 16 8 C -0.05 -0.61 0.88 -154.54 -0.14 -0.74 16 9 C -0.14 -1.36 7.11 37.16 0.26 -1.10 16 10 C 0.47 7.37 6.44 36.01 0.23 7.61 16 11 O -0.51 -9.45 14.96 -18.75 -0.28 -9.73 16 12 O -0.35 -6.09 10.08 -39.27 -0.40 -6.49 16 13 C 0.07 1.27 5.47 37.15 0.20 1.48 16 14 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 19 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 20 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.05 0.38 6.55 -51.93 -0.34 0.04 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.60 6.42 -51.93 -0.33 0.27 16 28 H 0.06 0.47 7.04 -51.93 -0.37 0.11 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.52 6.27 -51.93 -0.33 0.20 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 34 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 35 H 0.06 0.63 6.61 -51.93 -0.34 0.28 16 36 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.07 0.55 6.88 -51.93 -0.36 0.19 16 38 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -31.12 345.13 -8.17 -39.28 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.82 Total: -3.70 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.58 Total: -14.93 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.68 Total: -16.22 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.12 -8.17 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885059746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.312 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds