Wall clock time and date at job start Mon Mar 30 2020 00:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09000 * 110.01718 * 306.38553 * 3 2 1 5 5 C 1.54258 * 110.03570 * 67.83449 * 3 2 1 6 6 C 1.54889 * 104.20088 * 95.67381 * 5 3 2 7 7 C 1.54886 * 102.74428 * 37.94130 * 6 5 3 8 8 C 1.53883 * 110.02908 * 185.00080 * 3 2 1 9 9 C 1.52997 * 110.03358 * 359.97438 * 8 3 2 10 10 C 1.50702 * 110.02999 * 121.43022 * 8 3 2 11 11 O 1.20823 * 119.99996 * 359.97438 * 10 8 3 12 12 O 1.34233 * 119.99748 * 180.02562 * 10 8 3 13 13 C 1.45197 * 116.99971 * 180.02562 * 12 10 8 14 14 C 1.52995 * 109.47126 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47345 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47317 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00076 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00233 * 179.97438 * 16 15 14 19 19 N 1.31523 * 119.99549 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00304 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47505 * 89.99889 * 20 18 16 22 22 H 1.48499 * 109.47266 * 210.00350 * 20 18 16 23 23 H 1.48508 * 109.47185 * 329.99969 * 20 18 16 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09000 * 110.48665 * 214.35316 * 5 3 2 30 30 H 1.09006 * 110.48437 * 336.99407 * 5 3 2 31 31 H 1.09000 * 110.75249 * 279.63312 * 6 5 3 32 32 H 1.08992 * 110.91852 * 156.33180 * 6 5 3 33 33 H 1.09003 * 110.48788 * 203.38398 * 7 6 5 34 34 H 1.09001 * 110.60013 * 80.79918 * 7 6 5 35 35 H 1.09005 * 109.47333 * 59.99723 * 9 8 3 36 36 H 1.09001 * 109.47130 * 180.02562 * 9 8 3 37 37 H 1.09005 * 109.46947 * 300.00317 * 9 8 3 38 38 H 1.09004 * 109.46847 * 299.99863 * 13 12 10 39 39 H 1.08995 * 109.47541 * 59.99599 * 13 12 10 40 40 H 1.09004 * 109.47347 * 299.99803 * 14 13 12 41 41 H 1.09009 * 109.47215 * 59.99593 * 14 13 12 42 42 H 1.09004 * 109.46964 * 300.00315 * 15 14 13 43 43 H 1.08995 * 109.47205 * 59.99917 * 15 14 13 44 44 H 0.96997 * 119.99416 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9968 -0.8245 5 6 1.7006 2.1230 1.3421 6 6 2.9863 1.9545 2.1894 7 6 4.1124 2.1496 1.1440 8 6 3.5735 1.4593 -0.1260 9 6 4.1081 0.0284 -0.2112 10 6 3.9824 2.2380 -1.3498 11 8 3.1398 2.7347 -2.0591 12 8 5.2826 2.3789 -1.6522 13 6 5.6029 3.1421 -2.8452 14 6 7.1214 3.1943 -3.0247 15 6 7.4590 3.9979 -4.2822 16 6 8.9546 4.0488 -4.4594 17 1 9.6000 3.5575 -3.7462 18 6 9.4993 4.7226 -5.5319 19 7 8.7134 5.3205 -6.4007 20 14 11.3532 4.7851 -5.7520 21 1 11.7935 3.6287 -6.5730 22 1 11.7282 6.0490 -6.4355 23 1 12.0117 4.7274 -4.4222 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.4803 3.1795 1.1892 30 1 0.8594 1.6225 1.8217 31 1 3.0331 0.9568 2.6259 32 1 3.0435 2.7173 2.9657 33 1 5.0313 1.6684 1.4789 34 1 4.2839 3.2099 0.9584 35 1 3.6824 -0.4673 -1.0837 36 1 5.1943 0.0510 -0.2997 37 1 3.8286 -0.5182 0.6895 38 1 5.1501 2.6648 -3.7143 39 1 5.2144 4.1554 -2.7436 40 1 7.5739 3.6718 -2.1556 41 1 7.5103 2.1811 -3.1262 42 1 7.0065 3.5201 -5.1511 43 1 7.0700 5.0111 -4.1811 44 1 9.0966 5.7949 -7.1550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885059746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:30 Heat of formation + Delta-G solvation = -145.002115 kcal Electronic energy + Delta-G solvation = -20905.407123 eV Core-core repulsion = 17820.530113 eV Total energy + Delta-G solvation = -3084.877011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.10267 -39.80194 -37.71839 -35.97404 -34.08757 -33.66247 -32.50203 -29.08323 -28.52664 -26.81451 -25.49318 -24.32952 -22.76835 -22.20435 -21.22263 -19.45475 -18.72761 -18.39014 -17.78739 -17.61944 -16.56630 -16.48399 -15.84071 -15.46409 -14.84693 -14.75117 -14.33454 -14.25843 -14.05737 -13.91209 -13.79608 -13.36135 -13.15325 -12.84452 -12.70177 -12.52822 -12.46101 -12.32800 -12.27691 -12.10319 -11.80529 -11.69642 -11.62590 -11.57399 -11.45423 -11.34326 -11.25681 -11.16008 -11.05623 -10.59318 -8.23559 -6.35540 1.11590 1.40371 1.42242 1.53234 1.62566 2.40220 3.10244 3.32031 3.49595 3.60728 3.93553 3.95724 4.02013 4.18342 4.27168 4.34447 4.36166 4.39555 4.45191 4.51187 4.69624 4.75160 4.77979 4.83270 4.87256 4.91212 4.95125 5.04144 5.07198 5.11607 5.14849 5.19152 5.24996 5.37060 5.41591 5.43629 5.49540 5.50835 5.56497 5.59956 5.77455 6.16591 6.66311 6.80352 7.34154 8.88846 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040207 B = 0.003122 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.236332 B = 8965.862557 C = 9170.185403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.089 4.089 4 H 0.063 0.937 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.112 4.112 8 C -0.051 4.051 9 C -0.138 4.138 10 C 0.460 3.540 11 O -0.544 6.544 12 O -0.352 6.352 13 C 0.076 3.924 14 C -0.091 4.091 15 C 0.026 3.974 16 C -0.544 4.544 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.068 0.932 42 H -0.005 1.005 43 H -0.005 1.005 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.782 -12.192 19.680 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.107 4.107 4 H 0.082 0.918 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.150 4.150 8 C -0.052 4.052 9 C -0.195 4.195 10 C 0.305 3.695 11 O -0.434 6.434 12 O -0.268 6.268 13 C 0.002 3.998 14 C -0.129 4.129 15 C -0.011 4.011 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.185 1.185 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.000 -11.930 19.285 26.650 hybrid contribution 0.698 0.812 -1.267 1.658 sum -13.302 -11.119 18.018 25.004 Atomic orbital electron populations 1.21843 0.95369 1.02141 1.01741 1.21711 0.96161 0.94327 1.02871 1.21919 0.90683 0.98582 0.99531 0.91838 1.22479 0.99137 1.00008 0.94033 1.22496 0.92386 1.03552 0.96574 1.22489 1.00412 0.99665 0.92436 1.21424 0.97819 0.96534 0.89459 1.22031 1.01416 0.91873 1.04171 1.24646 0.80130 0.77717 0.87046 1.90599 1.52761 1.47824 1.52255 1.86499 1.27734 1.67587 1.45021 1.23118 0.97766 0.94490 0.84390 1.21441 0.90784 1.01362 0.99314 1.18932 0.96033 0.94042 0.92102 1.21619 0.92830 1.33664 1.10032 0.91580 1.26041 1.03774 0.94759 0.95414 1.70111 1.37290 1.35588 1.14458 0.85362 0.78737 0.77670 0.78777 1.19652 1.20776 1.18457 0.91579 0.94222 0.91626 0.92301 0.89347 0.92794 0.88946 0.88927 0.90092 0.88844 0.92938 0.92185 0.91763 0.87757 0.92284 0.92371 0.91440 0.91378 0.98619 0.98640 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.75 71.98 0.70 -1.36 16 2 C -0.11 -1.67 4.16 30.59 0.13 -1.54 16 3 C -0.09 -1.75 2.53 -10.07 -0.03 -1.77 16 4 H 0.06 1.70 6.40 -2.39 -0.02 1.68 16 5 C -0.12 -1.81 6.21 31.67 0.20 -1.62 16 6 C -0.11 -1.42 6.91 31.88 0.22 -1.20 16 7 C -0.11 -2.05 5.88 31.67 0.19 -1.86 16 8 C -0.05 -1.12 0.88 -52.20 -0.05 -1.17 16 9 C -0.14 -2.39 7.11 71.98 0.51 -1.87 16 10 C 0.46 14.82 6.44 71.24 0.46 15.28 16 11 O -0.54 -21.00 14.96 21.97 0.33 -20.67 16 12 O -0.35 -12.24 10.08 -51.45 -0.52 -12.76 16 13 C 0.08 2.99 5.47 71.98 0.39 3.38 16 14 C -0.09 -3.91 5.53 30.59 0.17 -3.74 16 15 C 0.03 1.41 4.97 29.85 0.15 1.55 16 16 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 18 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 19 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 20 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H 0.07 0.74 6.55 -2.39 -0.02 0.73 16 25 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.97 6.42 -2.39 -0.02 0.95 16 28 H 0.09 0.91 7.04 -2.39 -0.02 0.90 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.04 6.27 -2.38 -0.01 1.03 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.47 7.84 -2.39 -0.02 1.45 16 34 H 0.05 1.15 7.85 -2.39 -0.02 1.13 16 35 H 0.06 1.09 6.61 -2.38 -0.02 1.07 16 36 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 37 H 0.10 1.15 6.88 -2.38 -0.02 1.14 16 38 H 0.06 2.38 8.13 -2.38 -0.02 2.36 16 39 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 40 H 0.07 2.77 8.14 -2.38 -0.02 2.76 16 41 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 42 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 43 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -68.49 345.13 6.81 -61.68 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.95 Total: 9.16 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.74 Total: -26.50 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.28 Total: -57.23 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.19 Total: -33.43 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -68.49 6.81 -61.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885059746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.320 kcal (2) G-P(sol) polarization free energy of solvation -68.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds