Wall clock time and date at job start Mon Mar 30 2020 00:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47294 * 2 1 4 4 H 1.08994 * 110.05745 * 53.09334 * 3 2 1 5 5 C 1.54265 * 110.03208 * 291.67469 * 3 2 1 6 6 C 1.54892 * 104.19824 * 217.10637 * 5 3 2 7 7 C 1.54886 * 102.74620 * 37.94212 * 6 5 3 8 8 C 1.53881 * 110.03312 * 174.51128 * 3 2 1 9 9 C 1.53004 * 110.07236 * 238.59165 * 8 3 2 10 10 C 1.50701 * 110.03128 * 359.97438 * 8 3 2 11 11 O 1.20820 * 120.00405 * 245.30243 * 10 8 3 12 12 O 1.34232 * 119.99942 * 65.30366 * 10 8 3 13 13 C 1.45196 * 117.00253 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47090 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47272 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47343 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00049 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99801 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99853 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00235 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46870 * 269.99479 * 20 18 16 22 22 H 1.48507 * 109.47232 * 149.99860 * 20 18 16 23 23 H 1.48499 * 109.47194 * 29.99373 * 20 18 16 24 24 H 1.09002 * 109.47204 * 60.00310 * 1 2 3 25 25 H 1.09000 * 109.47594 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47283 * 300.00438 * 1 2 3 27 27 H 1.08999 * 109.47283 * 239.99562 * 2 1 3 28 28 H 1.09000 * 109.46758 * 119.99956 * 2 1 3 29 29 H 1.09001 * 110.48643 * 98.43042 * 5 3 2 30 30 H 1.09000 * 110.60156 * 335.84168 * 5 3 2 31 31 H 1.09001 * 110.75443 * 279.63388 * 6 5 3 32 32 H 1.09000 * 110.75539 * 156.25896 * 6 5 3 33 33 H 1.08998 * 110.48635 * 203.37908 * 7 6 5 34 34 H 1.09004 * 110.60090 * 80.79577 * 7 6 5 35 35 H 1.08995 * 109.47033 * 180.71489 * 9 8 3 36 36 H 1.08995 * 109.46676 * 300.71767 * 9 8 3 37 37 H 1.09004 * 109.46758 * 60.71344 * 9 8 3 38 38 H 1.08997 * 109.47089 * 59.99862 * 13 12 10 39 39 H 1.08996 * 109.46928 * 299.99593 * 13 12 10 40 40 H 1.09006 * 109.47603 * 59.99766 * 14 13 12 41 41 H 1.09006 * 109.47264 * 299.99748 * 14 13 12 42 42 H 1.08997 * 109.47543 * 59.99691 * 15 14 13 43 43 H 1.09006 * 109.46749 * 300.00037 * 15 14 13 44 44 H 0.97004 * 120.00139 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5849 1.9998 0.8187 5 6 1.7115 2.1191 -1.3468 6 6 2.9422 3.0153 -1.6319 7 6 4.1216 2.1462 -1.1293 8 6 3.5725 1.4597 0.1383 9 6 3.9786 2.2532 1.3818 10 6 4.0982 0.0505 0.2317 11 8 4.6311 -0.3295 1.2473 12 8 3.9746 -0.7827 -0.8135 13 6 4.5033 -2.1253 -0.6525 14 6 4.2727 -2.9218 -1.9382 15 6 4.8293 -4.3369 -1.7683 16 6 4.6017 -5.1216 -3.0346 17 1 4.1089 -4.6577 -3.8762 18 6 5.0225 -6.4319 -3.1186 19 7 4.8234 -7.1169 -4.2235 20 14 5.8742 -7.2346 -1.6627 21 1 7.3397 -7.0179 -1.7654 22 1 5.5881 -8.6918 -1.6636 23 1 5.3719 -6.6323 -0.4017 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.8100 2.7256 -1.2592 30 1 1.5930 1.3726 -2.1323 31 1 2.8809 3.9463 -1.0683 32 1 3.0363 3.2141 -2.6995 33 1 4.9790 2.7724 -0.8830 34 1 4.3960 1.4025 -1.8775 35 1 5.0654 2.2699 1.4633 36 1 3.6046 3.2737 1.2997 37 1 3.5550 1.7812 2.2684 38 1 3.9961 -2.6185 0.1768 39 1 5.5720 -2.0725 -0.4450 40 1 4.7802 -2.4285 -2.7673 41 1 3.2040 -2.9748 -2.1462 42 1 4.3215 -4.8300 -0.9395 43 1 5.8980 -4.2843 -1.5601 44 1 5.1191 -8.0389 -4.2825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885059747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:33 Heat of formation + Delta-G solvation = -129.015681 kcal Electronic energy + Delta-G solvation = -21433.759342 eV Core-core repulsion = 18349.575555 eV Total energy + Delta-G solvation = -3084.183787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06411 -38.47542 -36.50000 -34.05172 -33.47421 -31.86547 -31.41525 -27.84623 -27.79113 -26.07160 -23.52576 -22.59117 -21.93066 -20.58631 -20.33744 -19.07961 -17.30770 -16.82394 -16.33216 -16.10930 -15.51503 -14.85481 -14.31250 -14.18180 -14.10842 -13.60674 -13.19069 -12.85916 -12.81267 -12.73135 -12.64792 -12.24341 -12.08036 -11.90998 -11.69289 -11.35303 -11.23237 -11.05067 -10.94185 -10.82856 -10.76286 -10.60780 -10.57830 -10.36682 -10.26742 -9.91477 -9.76782 -9.68960 -9.24920 -8.56942 -6.07317 -4.06223 2.34386 2.85716 3.29615 3.37243 3.40905 4.26126 4.28531 4.37365 4.42827 4.84021 4.97225 5.02602 5.08014 5.15636 5.22221 5.26159 5.31371 5.44421 5.45788 5.47455 5.52542 5.61339 5.63399 5.66716 5.73016 5.85271 5.87114 5.91916 5.94089 5.97608 6.06801 6.14737 6.16087 6.30732 6.39702 6.42507 6.70412 6.83305 7.21461 7.32718 7.72707 7.96222 8.49577 8.96977 9.54412 11.05881 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.004053 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.033116 B = 6906.307988 C = 7141.844427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C -0.075 4.075 4 H 0.081 0.919 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.057 4.057 9 C -0.128 4.128 10 C 0.473 3.527 11 O -0.516 6.516 12 O -0.350 6.350 13 C 0.063 3.937 14 C -0.100 4.100 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.902 5.902 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.014 0.986 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 21.706 8.709 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C -0.093 4.093 4 H 0.100 0.900 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.154 4.154 8 C -0.058 4.058 9 C -0.185 4.185 10 C 0.316 3.684 11 O -0.405 6.405 12 O -0.267 6.267 13 C -0.010 4.010 14 C -0.137 4.137 15 C -0.048 4.048 16 C -0.559 4.559 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.751 21.359 8.918 23.850 hybrid contribution 0.626 -0.782 0.882 1.335 sum -5.124 20.577 9.800 23.361 Atomic orbital electron populations 1.21739 0.95397 1.01870 1.01487 1.22004 0.96526 0.95480 1.03367 1.21869 0.91251 0.97276 0.98932 0.90033 1.22476 0.97773 0.98698 0.96604 1.22474 0.94325 0.97872 1.01189 1.22527 0.98314 0.99150 0.95367 1.21332 0.96968 0.88840 0.98708 1.21760 1.02161 0.98991 0.95588 1.23403 0.75553 0.88178 0.81284 1.90635 1.40973 1.77493 1.31368 1.86542 1.73523 1.25076 1.41551 1.23459 0.98545 0.77888 1.01079 1.21539 1.02265 0.96060 0.93877 1.19522 0.95798 0.91200 0.98313 1.21054 1.39125 0.96641 0.99075 0.90807 1.25008 0.95446 0.97169 0.95733 1.69909 1.47400 1.10192 1.26547 0.86795 0.80276 0.78571 0.83770 1.20200 1.21265 1.19005 0.92449 0.92544 0.93164 0.89250 0.92566 0.91421 0.90594 0.91438 0.90986 0.90928 0.89816 0.91901 0.91321 0.91709 0.91736 0.91758 0.91606 0.91587 0.96340 0.96778 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.77 37.15 0.36 -1.07 16 2 C -0.14 -1.58 4.01 -26.74 -0.11 -1.68 16 3 C -0.07 -0.73 2.58 -89.50 -0.23 -0.96 16 4 H 0.08 0.71 7.67 -51.93 -0.40 0.31 16 5 C -0.12 -0.99 5.55 -25.07 -0.14 -1.13 16 6 C -0.12 -0.94 6.91 -24.74 -0.17 -1.11 16 7 C -0.12 -1.12 5.87 -25.08 -0.15 -1.27 16 8 C -0.06 -0.63 0.88 -154.54 -0.14 -0.77 16 9 C -0.13 -1.25 7.46 37.16 0.28 -0.97 16 10 C 0.47 7.08 4.75 36.01 0.17 7.25 16 11 O -0.52 -9.16 15.79 -18.75 -0.30 -9.46 16 12 O -0.35 -5.57 7.32 -39.26 -0.29 -5.86 16 13 C 0.06 1.12 5.47 37.16 0.20 1.32 16 14 C -0.10 -1.98 5.53 -26.73 -0.15 -2.13 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 16 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 20 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 24 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 1.18 6.12 -51.93 -0.32 0.86 16 28 H 0.06 0.74 7.20 -51.93 -0.37 0.37 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.71 7.76 -51.93 -0.40 0.31 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.62 7.84 -51.93 -0.41 0.22 16 34 H 0.08 0.93 7.34 -51.93 -0.38 0.55 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 38 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 39 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 43 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 343.40 15.07 5.18 5.18 Total: -1.00 -31.28 343.40 -8.01 -39.28 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.09 Total: -3.06 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.61 Total: -16.19 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 0.77 Total: -27.02 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.58 Total: -15.32 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.28 -8.01 -39.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885059747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.734 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds