Wall clock time and date at job start Mon Mar 30 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47294 * 2 1 4 4 H 1.08994 * 110.05745 * 53.09334 * 3 2 1 5 5 C 1.54265 * 110.03208 * 291.67469 * 3 2 1 6 6 C 1.54892 * 104.19824 * 217.10637 * 5 3 2 7 7 C 1.54886 * 102.74620 * 37.94212 * 6 5 3 8 8 C 1.53881 * 110.03312 * 174.51128 * 3 2 1 9 9 C 1.53004 * 110.07236 * 238.59165 * 8 3 2 10 10 C 1.50701 * 110.03128 * 359.97438 * 8 3 2 11 11 O 1.20820 * 120.00405 * 245.30243 * 10 8 3 12 12 O 1.34232 * 119.99942 * 65.30366 * 10 8 3 13 13 C 1.45196 * 117.00253 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47090 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47272 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47343 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00049 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99801 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99853 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00235 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46870 * 269.99479 * 20 18 16 22 22 H 1.48507 * 109.47232 * 149.99860 * 20 18 16 23 23 H 1.48499 * 109.47194 * 29.99373 * 20 18 16 24 24 H 1.09002 * 109.47204 * 60.00310 * 1 2 3 25 25 H 1.09000 * 109.47594 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47283 * 300.00438 * 1 2 3 27 27 H 1.08999 * 109.47283 * 239.99562 * 2 1 3 28 28 H 1.09000 * 109.46758 * 119.99956 * 2 1 3 29 29 H 1.09001 * 110.48643 * 98.43042 * 5 3 2 30 30 H 1.09000 * 110.60156 * 335.84168 * 5 3 2 31 31 H 1.09001 * 110.75443 * 279.63388 * 6 5 3 32 32 H 1.09000 * 110.75539 * 156.25896 * 6 5 3 33 33 H 1.08998 * 110.48635 * 203.37908 * 7 6 5 34 34 H 1.09004 * 110.60090 * 80.79577 * 7 6 5 35 35 H 1.08995 * 109.47033 * 180.71489 * 9 8 3 36 36 H 1.08995 * 109.46676 * 300.71767 * 9 8 3 37 37 H 1.09004 * 109.46758 * 60.71344 * 9 8 3 38 38 H 1.08997 * 109.47089 * 59.99862 * 13 12 10 39 39 H 1.08996 * 109.46928 * 299.99593 * 13 12 10 40 40 H 1.09006 * 109.47603 * 59.99766 * 14 13 12 41 41 H 1.09006 * 109.47264 * 299.99748 * 14 13 12 42 42 H 1.08997 * 109.47543 * 59.99691 * 15 14 13 43 43 H 1.09006 * 109.46749 * 300.00037 * 15 14 13 44 44 H 0.97004 * 120.00139 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5849 1.9998 0.8187 5 6 1.7115 2.1191 -1.3468 6 6 2.9422 3.0153 -1.6319 7 6 4.1216 2.1462 -1.1293 8 6 3.5725 1.4597 0.1383 9 6 3.9786 2.2532 1.3818 10 6 4.0982 0.0505 0.2317 11 8 4.6311 -0.3295 1.2473 12 8 3.9746 -0.7827 -0.8135 13 6 4.5033 -2.1253 -0.6525 14 6 4.2727 -2.9218 -1.9382 15 6 4.8293 -4.3369 -1.7683 16 6 4.6017 -5.1216 -3.0346 17 1 4.1089 -4.6577 -3.8762 18 6 5.0225 -6.4319 -3.1186 19 7 4.8234 -7.1169 -4.2235 20 14 5.8742 -7.2346 -1.6627 21 1 7.3397 -7.0179 -1.7654 22 1 5.5881 -8.6918 -1.6636 23 1 5.3719 -6.6323 -0.4017 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.8100 2.7256 -1.2592 30 1 1.5930 1.3726 -2.1323 31 1 2.8809 3.9463 -1.0683 32 1 3.0363 3.2141 -2.6995 33 1 4.9790 2.7724 -0.8830 34 1 4.3960 1.4025 -1.8775 35 1 5.0654 2.2699 1.4633 36 1 3.6046 3.2737 1.2997 37 1 3.5550 1.7812 2.2684 38 1 3.9961 -2.6185 0.1768 39 1 5.5720 -2.0725 -0.4450 40 1 4.7802 -2.4285 -2.7673 41 1 3.2040 -2.9748 -2.1462 42 1 4.3215 -4.8300 -0.9395 43 1 5.8980 -4.2843 -1.5601 44 1 5.1191 -8.0389 -4.2825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885059747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:32 Heat of formation + Delta-G solvation = -144.930621 kcal Electronic energy + Delta-G solvation = -21434.449465 eV Core-core repulsion = 18349.575555 eV Total energy + Delta-G solvation = -3084.873911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.16836 -39.45506 -37.83914 -35.94755 -34.30036 -33.88296 -32.21092 -29.58309 -28.57243 -27.05906 -25.04856 -23.63066 -23.01892 -22.11265 -21.31790 -20.20935 -19.03743 -18.38439 -17.66963 -17.19265 -16.39164 -16.27079 -15.83237 -15.49951 -15.13048 -14.82314 -14.53541 -14.28123 -14.01880 -13.83589 -13.56094 -13.42917 -13.39023 -12.93519 -12.87948 -12.67377 -12.51206 -12.18676 -12.05759 -11.99685 -11.86191 -11.77112 -11.60906 -11.52533 -11.45805 -11.40294 -11.33581 -11.22818 -11.14097 -10.79592 -8.32245 -6.37186 1.15552 1.34549 1.36050 1.47757 1.66184 2.33542 3.02814 3.40534 3.49334 3.53187 3.90699 3.95440 4.00061 4.15624 4.19817 4.32760 4.34742 4.42251 4.47457 4.54188 4.69298 4.70192 4.73531 4.74218 4.85282 4.89613 4.92765 4.96544 5.05132 5.11316 5.13662 5.24012 5.25243 5.28253 5.32818 5.36794 5.42356 5.45086 5.51903 5.56890 5.60995 6.23619 6.68785 6.73327 7.27376 8.84326 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.004053 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.033116 B = 6906.307988 C = 7141.844427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C -0.072 4.072 4 H 0.101 0.899 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.118 4.118 8 C -0.057 4.057 9 C -0.125 4.125 10 C 0.469 3.531 11 O -0.547 6.547 12 O -0.351 6.351 13 C 0.073 3.927 14 C -0.089 4.089 15 C -0.009 4.009 16 C -0.534 4.534 17 H 0.036 0.964 18 C 0.008 3.992 19 N -0.948 5.948 20 Si 0.948 3.052 21 H -0.265 1.265 22 H -0.281 1.281 23 H -0.249 1.249 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 23.863 10.292 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.090 4.090 4 H 0.119 0.881 5 C -0.154 4.154 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.058 4.058 9 C -0.182 4.182 10 C 0.315 3.685 11 O -0.437 6.437 12 O -0.267 6.267 13 C -0.001 4.001 14 C -0.126 4.126 15 C -0.047 4.047 16 C -0.572 4.572 17 H 0.055 0.945 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.771 3.229 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.173 1.173 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.956 23.542 10.498 26.455 hybrid contribution 0.644 -1.423 0.319 1.594 sum -5.311 22.119 10.817 25.188 Atomic orbital electron populations 1.21714 0.93869 1.01726 1.02794 1.21958 0.97925 0.96447 1.01064 1.21927 0.90126 0.96280 1.00660 0.88053 1.22476 0.99142 0.98648 0.95087 1.22481 0.92562 0.98043 1.01954 1.22565 0.99785 0.99103 0.94089 1.21570 0.97882 0.86135 1.00234 1.21791 1.01763 1.00340 0.94319 1.24360 0.74619 0.89274 0.80294 1.90615 1.42534 1.78239 1.32335 1.86560 1.73447 1.24367 1.42308 1.23118 0.98673 0.78886 0.99422 1.21285 1.01722 0.94519 0.95092 1.19447 0.96513 0.92724 0.95970 1.21377 1.38537 0.97353 0.99889 0.94541 1.25965 0.96264 0.97857 0.98856 1.70054 1.48952 1.10820 1.29035 0.85695 0.79396 0.77560 0.80251 1.19017 1.20698 1.17258 0.91215 0.93505 0.91695 0.91508 0.94874 0.89227 0.92038 0.89218 0.90297 0.89640 0.91825 0.92663 0.88081 0.92692 0.91811 0.91611 0.91841 0.91921 0.95871 0.95913 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.77 71.98 0.70 -1.90 16 2 C -0.14 -3.08 4.01 30.59 0.12 -2.96 16 3 C -0.07 -1.25 2.58 -10.07 -0.03 -1.28 16 4 H 0.10 1.41 7.67 -2.39 -0.02 1.39 16 5 C -0.12 -1.64 5.55 31.67 0.18 -1.46 16 6 C -0.11 -1.39 6.91 31.88 0.22 -1.17 16 7 C -0.12 -2.05 5.87 31.67 0.19 -1.87 16 8 C -0.06 -1.18 0.88 -52.20 -0.05 -1.22 16 9 C -0.13 -2.16 7.46 71.98 0.54 -1.63 16 10 C 0.47 13.97 4.75 71.24 0.34 14.30 16 11 O -0.55 -19.43 15.79 21.98 0.35 -19.08 16 12 O -0.35 -11.24 7.32 -51.43 -0.38 -11.62 16 13 C 0.07 2.56 5.47 71.98 0.39 2.96 16 14 C -0.09 -3.56 5.53 30.59 0.17 -3.39 16 15 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 16 C -0.53 -31.08 9.66 25.60 0.25 -30.83 16 17 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 18 C 0.01 0.46 5.47 84.65 0.46 0.92 16 19 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 20 Si 0.95 44.62 27.47 68.60 1.88 46.50 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 24 H 0.07 1.08 7.53 -2.39 -0.02 1.07 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.79 6.12 -2.39 -0.01 1.78 16 28 H 0.03 0.88 7.20 -2.39 -0.02 0.86 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.06 7.76 -2.39 -0.02 1.04 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.26 7.84 -2.39 -0.02 1.24 16 34 H 0.06 1.37 7.34 -2.38 -0.02 1.35 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.06 8.07 -2.39 -0.02 1.04 16 38 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 39 H 0.07 2.30 8.13 -2.39 -0.02 2.28 16 40 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 43 H 0.02 1.04 7.57 -2.38 -0.02 1.02 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -68.85 343.40 6.64 -62.21 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.88 Total: 11.25 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 3.61 Total: -29.82 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.30 Total: -59.44 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.03 Total: -30.70 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -68.85 6.64 -62.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885059747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.722 kcal (2) G-P(sol) polarization free energy of solvation -68.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds