Wall clock time and date at job start Mon Mar 30 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 110.27153 * 2 1 4 4 C 1.54780 * 110.15691 * 237.79695 * 2 1 3 5 5 C 1.54934 * 102.83594 * 262.84954 * 4 2 1 6 6 N 1.48538 * 103.37594 * 322.79751 * 5 4 2 7 7 C 1.46901 * 111.00093 * 159.64196 * 6 5 4 8 8 C 1.52994 * 109.47151 * 184.26294 * 7 6 5 9 9 N 1.46500 * 109.47085 * 185.12567 * 8 7 6 10 10 C 1.34773 * 119.99961 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00204 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99876 * 179.97438 * 10 9 8 13 13 C 1.53001 * 109.47274 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47274 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00542 * 0.02562 * 14 13 12 16 16 C 1.37887 * 119.99871 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00088 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99768 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47296 * 89.99955 * 18 16 14 20 20 H 1.48506 * 109.47172 * 210.00181 * 18 16 14 21 21 H 1.48502 * 109.47360 * 329.99870 * 18 16 14 22 22 C 1.47904 * 105.82105 * 39.12434 * 6 5 4 23 23 H 1.09000 * 109.47490 * 297.91395 * 1 2 3 24 24 H 1.08993 * 109.47011 * 57.91821 * 1 2 3 25 25 H 1.09004 * 109.46803 * 177.91187 * 1 2 3 26 26 H 1.08995 * 109.46882 * 182.08765 * 3 2 1 27 27 H 1.09004 * 109.46829 * 302.08620 * 3 2 1 28 28 H 1.08996 * 109.47379 * 62.08650 * 3 2 1 29 29 H 1.08991 * 110.64969 * 144.56334 * 4 2 1 30 30 H 1.09001 * 110.87322 * 21.22683 * 4 2 1 31 31 H 1.08996 * 110.66341 * 204.28200 * 5 4 2 32 32 H 1.08994 * 110.66824 * 81.31679 * 5 4 2 33 33 H 1.09001 * 109.46494 * 304.26001 * 7 6 5 34 34 H 1.09001 * 109.46997 * 64.25387 * 7 6 5 35 35 H 1.09005 * 109.46921 * 305.12124 * 8 7 6 36 36 H 1.09000 * 109.47244 * 65.12248 * 8 7 6 37 37 H 0.96994 * 120.00152 * 359.97438 * 9 8 7 38 38 H 1.08998 * 109.47595 * 300.00031 * 12 10 9 39 39 H 1.09000 * 109.47354 * 60.00173 * 12 10 9 40 40 H 1.09002 * 109.47553 * 300.00468 * 13 12 10 41 41 H 1.09007 * 109.47031 * 60.00167 * 13 12 10 42 42 H 0.97002 * 120.00445 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.91272 * 94.01825 * 22 6 5 44 44 H 1.08993 * 109.91853 * 215.11594 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0634 -0.7743 -1.2295 5 6 2.3585 -2.1803 -0.6493 6 7 2.8810 -1.8883 0.7102 7 6 2.7670 -3.0651 1.5820 8 6 3.2146 -2.6963 2.9977 9 7 3.2177 -3.8968 3.8373 10 6 3.5809 -3.8125 5.1324 11 8 3.9048 -2.7427 5.6030 12 6 3.5835 -5.0474 5.9961 13 6 4.0313 -4.6787 7.4119 14 6 4.0333 -5.9135 8.2758 15 1 3.7446 -6.8661 7.8569 16 6 4.4038 -5.8270 9.6011 17 7 4.7550 -4.6669 10.1114 18 14 4.4070 -7.3577 10.6717 19 1 5.7392 -8.0097 10.5993 20 1 4.1171 -6.9788 12.0781 21 1 3.3671 -8.3016 10.1891 22 6 2.0645 -0.7670 1.2237 23 1 -0.3634 0.4811 0.9081 24 1 -0.3633 0.5458 -0.8707 25 1 -0.3633 -1.0270 -0.0374 26 1 3.1493 1.4202 -0.0374 27 1 1.6739 1.9652 -0.8707 28 1 1.7348 1.9428 0.9081 29 1 2.9759 -0.3137 -1.6076 30 1 1.3060 -0.8310 -2.0113 31 1 3.1106 -2.6935 -1.2484 32 1 1.4451 -2.7721 -0.5914 33 1 1.7304 -3.4013 1.6047 34 1 3.3999 -3.8649 1.1974 35 1 4.2193 -2.2747 2.9629 36 1 2.5267 -1.9618 3.4165 37 1 2.9583 -4.7524 3.4611 38 1 2.5787 -5.4684 6.0314 39 1 4.2709 -5.7824 5.5772 40 1 5.0360 -4.2574 7.3771 41 1 3.3436 -3.9439 7.8306 42 1 5.0160 -4.6061 11.0437 43 1 1.2323 -1.1530 1.8125 44 1 2.6804 -0.1100 1.8377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890072511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:38 Heat of formation + Delta-G solvation = -82.716185 kcal Electronic energy + Delta-G solvation = -20225.159571 eV Core-core repulsion = 17175.276232 eV Total energy + Delta-G solvation = -3049.883339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89668 -40.33847 -36.71333 -35.55543 -34.75526 -33.03701 -31.32045 -29.19354 -28.21327 -27.63167 -26.42901 -23.92284 -22.92964 -22.10010 -21.10824 -19.97521 -18.81965 -17.50826 -17.21089 -17.01006 -16.52580 -16.49423 -16.06454 -15.45280 -15.11774 -14.74402 -14.55087 -14.36132 -14.20840 -14.11585 -13.76568 -13.68125 -13.23942 -12.86262 -12.78025 -12.69299 -12.51607 -12.41419 -12.28196 -12.11818 -11.91553 -11.63747 -11.61150 -11.51846 -11.38624 -11.30765 -10.77422 -10.57147 -10.11213 -9.43406 -8.17906 -6.32162 1.42252 1.45316 1.56161 1.70072 2.13381 2.43982 3.12449 3.15018 3.53059 3.66044 3.85464 3.92237 4.03517 4.10458 4.33382 4.36562 4.42264 4.46128 4.52202 4.55695 4.60074 4.73229 4.78729 4.85218 4.86345 4.90282 4.92512 5.05738 5.07496 5.10385 5.17853 5.29218 5.34455 5.41446 5.45461 5.51118 5.63157 5.85589 5.88648 6.00343 6.17539 6.59945 6.86570 7.33697 7.38270 8.94954 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047655 B = 0.002637 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.412931 B =10613.726196 C =10869.770771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 C -0.135 4.135 4 C -0.110 4.110 5 C 0.035 3.965 6 N -0.528 5.528 7 C 0.050 3.950 8 C 0.125 3.875 9 N -0.717 5.717 10 C 0.510 3.490 11 O -0.591 6.591 12 C -0.118 4.118 13 C 0.041 3.959 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.939 5.939 18 Si 0.976 3.024 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.254 1.254 22 C 0.038 3.962 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.418 0.582 38 H 0.106 0.894 39 H 0.107 0.893 40 H -0.019 1.019 41 H -0.019 1.019 42 H 0.263 0.737 43 H 0.042 0.958 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 4.345 -27.363 29.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 C -0.192 4.192 4 C -0.148 4.148 5 C -0.092 4.092 6 N -0.252 5.252 7 C -0.079 4.079 8 C 0.000 4.000 9 N -0.371 5.371 10 C 0.298 3.702 11 O -0.471 6.471 12 C -0.157 4.157 13 C 0.003 3.997 14 C -0.580 4.580 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.178 1.178 22 C -0.090 4.090 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.255 0.745 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.000 1.000 41 H 0.000 1.000 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.578 5.319 -26.912 28.742 hybrid contribution -0.613 -0.717 1.091 1.442 sum -9.191 4.601 -25.821 27.791 Atomic orbital electron populations 1.21885 0.93294 1.01833 1.02334 1.21476 0.96044 0.95936 0.94339 1.21832 1.00763 0.94545 1.02076 1.22652 1.01616 0.93957 0.96552 1.23296 0.99086 0.97840 0.88958 1.64712 1.51867 1.05629 1.03036 1.22319 1.00907 0.94049 0.90627 1.21191 1.01070 0.87449 0.90257 1.45781 1.69269 1.12513 1.09554 1.21398 0.74978 0.91105 0.82676 1.90659 1.49480 1.32521 1.74424 1.21633 1.04560 0.94571 0.94966 1.18703 0.94338 0.95430 0.91241 1.21725 1.45240 0.95402 0.95680 0.90453 1.26174 0.94712 0.99678 1.00066 1.70184 1.46404 1.26768 1.14542 0.85295 0.79069 0.78582 0.77133 1.19680 1.21221 1.17813 1.23081 0.95363 0.93423 0.97129 0.92952 0.91134 0.92763 0.92899 0.91354 0.92994 0.90748 0.89292 0.89170 0.92900 0.92793 0.88420 0.92928 0.93398 0.74486 0.87569 0.87526 1.00040 1.00025 0.92858 0.93962 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.20 71.98 0.59 -1.04 16 2 C -0.08 -1.08 0.97 -51.24 -0.05 -1.13 16 3 C -0.13 -1.84 8.24 71.98 0.59 -1.24 16 4 C -0.11 -1.29 6.18 31.86 0.20 -1.10 16 5 C 0.04 0.47 6.55 86.65 0.57 1.03 16 6 N -0.53 -9.70 5.36 -883.02 -4.73 -14.43 16 7 C 0.05 0.88 4.94 86.30 0.43 1.31 16 8 C 0.12 3.26 5.43 86.38 0.47 3.73 16 9 N -0.72 -19.74 5.56 -463.07 -2.57 -22.31 16 10 C 0.51 20.30 7.83 87.66 0.69 20.99 16 11 O -0.59 -30.22 15.98 -3.03 -0.05 -30.27 16 12 C -0.12 -4.76 5.64 29.85 0.17 -4.59 16 13 C 0.04 2.30 4.26 29.85 0.13 2.42 16 14 C -0.54 -31.19 9.11 25.60 0.23 -30.95 16 15 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 16 C -0.01 -0.53 5.46 84.66 0.46 -0.07 16 17 N -0.94 -60.39 13.29 21.45 0.28 -60.10 16 18 Si 0.98 44.62 29.54 68.60 2.03 46.64 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 22 C 0.04 0.71 4.79 86.45 0.41 1.13 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 27 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.92 7.85 -2.39 -0.02 0.90 16 30 H 0.09 0.76 7.85 -2.39 -0.02 0.75 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.62 7.94 -2.39 -0.02 0.61 16 33 H 0.05 0.84 8.00 -2.39 -0.02 0.82 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.61 8.14 -2.38 -0.02 1.60 16 36 H 0.05 1.41 7.14 -2.39 -0.02 1.39 16 37 H 0.42 7.99 8.47 -92.71 -0.79 7.21 16 38 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 40 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 41 H -0.02 -1.20 8.10 -2.38 -0.02 -1.22 16 42 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 43 H 0.04 0.83 6.98 -2.38 -0.02 0.81 16 44 H 0.06 1.43 7.69 -2.39 -0.02 1.41 16 Total: -1.00 -77.37 352.35 0.01 -77.36 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.16 Total: 12.61 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.89 Total: -9.51 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -7.02 Total: -96.84 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.05 Total: -30.27 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -77.37 0.01 -77.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890072511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.353 kcal (2) G-P(sol) polarization free energy of solvation -77.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds