Wall clock time and date at job start Mon Mar 30 2020 01:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47039 * 2 1 4 4 C 1.53001 * 109.46902 * 240.00222 * 2 1 3 5 5 C 1.52995 * 109.47330 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47222 * 60.00144 * 5 4 2 7 7 C 1.53001 * 109.46850 * 300.00150 * 6 5 4 8 8 H 1.08997 * 109.47174 * 299.99394 * 7 6 5 9 9 C 1.53004 * 109.47284 * 179.97438 * 7 6 5 10 10 C 1.53001 * 109.47316 * 120.00455 * 2 1 3 11 11 H 1.08997 * 109.47002 * 59.99623 * 10 2 1 12 12 O 1.45197 * 109.46820 * 299.99333 * 10 2 1 13 13 C 1.34237 * 116.99419 * 90.00256 * 12 10 2 14 14 O 1.20821 * 119.99946 * 359.97438 * 13 12 10 15 15 C 1.50705 * 119.99541 * 179.97438 * 13 12 10 16 16 C 1.52996 * 109.46718 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46929 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.47348 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 H 1.08999 * 109.46901 * 299.99699 * 1 2 3 27 27 H 1.08998 * 109.47223 * 59.99836 * 1 2 3 28 28 H 1.09002 * 109.47039 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47049 * 59.99944 * 4 2 1 30 30 H 1.08997 * 109.47174 * 300.00229 * 4 2 1 31 31 H 1.08997 * 109.47418 * 300.00372 * 5 4 2 32 32 H 1.08999 * 109.47329 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47647 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47173 * 59.99978 * 6 5 4 35 35 H 1.09002 * 109.47181 * 300.00099 * 9 7 6 36 36 H 1.09001 * 109.47004 * 59.99515 * 9 7 6 37 37 H 1.08999 * 109.47348 * 180.02562 * 9 7 6 38 38 H 1.09000 * 109.46918 * 60.00147 * 15 13 12 39 39 H 1.09002 * 109.47135 * 299.99884 * 15 13 12 40 40 H 1.09000 * 109.47441 * 60.00302 * 16 15 13 41 41 H 1.09002 * 109.47087 * 299.99748 * 16 15 13 42 42 H 1.09001 * 109.47671 * 60.00109 * 17 16 15 43 43 H 1.09006 * 109.47297 * 299.99829 * 17 16 15 44 44 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0805 -1.4417 -0.0006 7 6 3.5705 -0.7205 1.2487 8 1 3.9336 0.3073 1.2486 9 6 4.0806 -1.4418 2.4980 10 6 2.0400 -0.7213 1.2492 11 1 1.6767 -1.7490 1.2491 12 8 1.5562 -0.0368 2.4347 13 6 0.3765 -0.4401 2.9323 14 8 -0.2317 -1.3350 2.3947 15 6 -0.1892 0.2234 4.1615 16 6 -1.5315 -0.4195 4.5160 17 6 -2.1062 0.2545 5.7635 18 6 -3.4287 -0.3783 6.1124 19 1 -3.8203 -1.1808 5.5048 20 6 -4.1386 0.0671 7.2072 21 7 -3.6619 1.0445 7.9468 22 14 -5.7781 -0.7169 7.6392 23 1 -6.3352 -0.0636 8.8508 24 1 -6.7223 -0.5464 6.5058 25 1 -5.5799 -2.1645 7.9048 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6765 -0.2073 -2.1393 30 1 1.6766 -1.7488 -1.2493 31 1 3.9329 0.3070 -1.2499 32 1 3.9332 -1.2341 -2.1399 33 1 5.1705 -1.4410 -0.0006 34 1 3.7175 -2.4695 -0.0004 35 1 3.7173 -2.4694 2.4980 36 1 5.1706 -1.4418 2.4979 37 1 3.7169 -0.9282 3.3880 38 1 -0.3351 1.2858 3.9663 39 1 0.5040 0.0986 4.9934 40 1 -1.3853 -1.4819 4.7114 41 1 -2.2249 -0.2951 3.6842 42 1 -2.2526 1.3168 5.5678 43 1 -1.4129 0.1305 6.5955 44 1 -2.8107 1.4519 7.7222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893308666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:49 Heat of formation + Delta-G solvation = -143.662488 kcal Electronic energy + Delta-G solvation = -21135.212836 eV Core-core repulsion = 18050.393916 eV Total energy + Delta-G solvation = -3084.818920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82343 -38.66135 -36.00601 -34.54635 -33.74416 -32.23492 -31.36729 -28.04443 -26.57705 -26.48805 -23.84375 -22.31303 -21.15383 -20.86377 -20.24514 -19.85519 -17.53909 -16.80667 -16.42715 -16.03017 -15.09542 -14.60242 -14.56713 -14.26624 -13.72009 -13.68905 -13.42494 -13.04042 -12.80871 -12.64450 -12.56647 -12.26641 -12.00958 -11.82360 -11.54399 -11.49676 -11.24946 -11.01683 -10.99580 -10.98872 -10.72701 -10.67948 -10.52428 -10.16351 -10.09720 -9.92534 -9.84915 -9.73617 -8.53660 -8.30454 -6.34191 -4.02848 2.50966 2.84440 3.46806 3.48812 3.67455 4.28483 4.38379 4.48978 4.57545 4.74789 4.76132 4.92863 5.04415 5.12981 5.14854 5.21492 5.39723 5.42824 5.47244 5.53709 5.55647 5.58244 5.59853 5.63166 5.69733 5.73775 5.87297 5.88700 5.94335 5.96308 6.02791 6.10349 6.15982 6.28943 6.50248 6.65740 6.70361 6.93286 7.41322 7.52171 8.06264 8.24022 8.49429 8.91064 9.68985 11.06731 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.038346 B = 0.003346 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.011021 B = 8367.221461 C = 8725.045323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.087 4.087 8 H 0.080 0.920 9 C -0.149 4.149 10 C 0.097 3.903 11 H 0.083 0.917 12 O -0.355 6.355 13 C 0.459 3.541 14 O -0.504 6.504 15 C -0.114 4.114 16 C -0.091 4.091 17 C 0.008 3.992 18 C -0.601 4.601 19 H 0.050 0.950 20 C 0.014 3.986 21 N -0.914 5.914 22 Si 1.069 2.931 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.088 -2.399 -17.488 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.105 4.105 8 H 0.099 0.901 9 C -0.207 4.207 10 C 0.042 3.958 11 H 0.101 0.899 12 O -0.273 6.273 13 C 0.303 3.697 14 O -0.391 6.391 15 C -0.152 4.152 16 C -0.129 4.129 17 C -0.029 4.029 18 C -0.639 4.639 19 H 0.068 0.932 20 C -0.190 4.190 21 N -0.551 5.551 22 Si 0.897 3.103 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.214 1.214 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.665 -2.632 -16.591 22.970 hybrid contribution 1.259 -0.097 -1.210 1.749 sum 16.924 -2.730 -17.802 24.714 Atomic orbital electron populations 1.21910 0.94187 1.02868 1.01501 1.21542 0.96673 1.00208 0.94015 0.90497 1.21567 0.95345 1.00970 0.97030 1.21590 0.95660 1.00990 0.97784 1.21593 1.00588 0.99474 0.93310 1.21226 0.92569 1.01039 0.95697 0.90149 1.21819 1.00784 1.00387 0.97662 1.22783 0.93599 0.97010 0.82437 0.89874 1.86564 1.37355 1.60491 1.42883 1.24204 0.78574 0.81437 0.85500 1.90627 1.59133 1.29474 1.59833 1.21686 0.99806 1.01468 0.92235 1.21414 0.91608 0.99755 1.00112 1.19253 0.96322 0.95576 0.91770 1.22051 1.05602 1.21497 1.14781 0.93205 1.25863 1.03904 0.95906 0.93283 1.70792 1.21244 1.23318 1.39716 0.83543 0.74922 0.75546 0.76261 1.20779 1.21422 1.21429 0.92877 0.92760 0.91604 0.91388 0.91636 0.91728 0.91666 0.91158 0.91648 0.92786 0.92391 0.91761 0.88370 0.88353 0.92306 0.92310 0.97315 0.97311 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 7.80 37.16 0.29 -1.59 16 2 C -0.11 -1.16 2.47 -90.62 -0.22 -1.38 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -0.97 5.20 -26.73 -0.14 -1.10 16 5 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 6 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 7 C -0.09 -0.83 2.47 -90.59 -0.22 -1.05 16 8 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 9 C -0.15 -1.43 9.05 37.16 0.34 -1.09 16 10 C 0.10 1.17 1.62 -26.70 -0.04 1.13 16 11 H 0.08 1.13 7.16 -51.93 -0.37 0.76 16 12 O -0.36 -5.12 9.08 -39.28 -0.36 -5.47 16 13 C 0.46 7.62 6.23 36.01 0.22 7.84 16 14 O -0.50 -9.46 13.12 -18.75 -0.25 -9.71 16 15 C -0.11 -1.94 5.81 -27.88 -0.16 -2.11 16 16 C -0.09 -1.96 4.44 -26.73 -0.12 -2.08 16 17 C 0.01 0.20 4.28 -27.88 -0.12 0.08 16 18 C -0.60 -17.56 9.11 -34.44 -0.31 -17.88 16 19 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 20 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 21 N -0.91 -28.31 13.65 55.43 0.76 -27.56 16 22 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.05 0.78 6.16 -51.93 -0.32 0.46 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.92 7.50 -51.93 -0.39 0.53 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 38 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 41 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 42 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 43 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 44 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -31.80 343.67 -8.78 -40.58 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -8.15 Total: -2.76 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -0.89 Total: -20.96 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.76 Total: -27.56 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.60 Total: -15.18 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.80 -8.78 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893308666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.082 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds