Wall clock time and date at job start Mon Mar 30 2020 01:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47039 * 2 1 4 4 C 1.53001 * 109.46902 * 240.00222 * 2 1 3 5 5 C 1.52995 * 109.47330 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47222 * 60.00144 * 5 4 2 7 7 C 1.53001 * 109.46850 * 300.00150 * 6 5 4 8 8 H 1.08997 * 109.47174 * 299.99394 * 7 6 5 9 9 C 1.53004 * 109.47284 * 179.97438 * 7 6 5 10 10 C 1.53001 * 109.47316 * 120.00455 * 2 1 3 11 11 H 1.08997 * 109.47002 * 59.99623 * 10 2 1 12 12 O 1.45197 * 109.46820 * 299.99333 * 10 2 1 13 13 C 1.34237 * 116.99419 * 90.00256 * 12 10 2 14 14 O 1.20821 * 119.99946 * 359.97438 * 13 12 10 15 15 C 1.50705 * 119.99541 * 179.97438 * 13 12 10 16 16 C 1.52996 * 109.46718 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46929 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.47348 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 H 1.08999 * 109.46901 * 299.99699 * 1 2 3 27 27 H 1.08998 * 109.47223 * 59.99836 * 1 2 3 28 28 H 1.09002 * 109.47039 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47049 * 59.99944 * 4 2 1 30 30 H 1.08997 * 109.47174 * 300.00229 * 4 2 1 31 31 H 1.08997 * 109.47418 * 300.00372 * 5 4 2 32 32 H 1.08999 * 109.47329 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47647 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47173 * 59.99978 * 6 5 4 35 35 H 1.09002 * 109.47181 * 300.00099 * 9 7 6 36 36 H 1.09001 * 109.47004 * 59.99515 * 9 7 6 37 37 H 1.08999 * 109.47348 * 180.02562 * 9 7 6 38 38 H 1.09000 * 109.46918 * 60.00147 * 15 13 12 39 39 H 1.09002 * 109.47135 * 299.99884 * 15 13 12 40 40 H 1.09000 * 109.47441 * 60.00302 * 16 15 13 41 41 H 1.09002 * 109.47087 * 299.99748 * 16 15 13 42 42 H 1.09001 * 109.47671 * 60.00109 * 17 16 15 43 43 H 1.09006 * 109.47297 * 299.99829 * 17 16 15 44 44 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0805 -1.4417 -0.0006 7 6 3.5705 -0.7205 1.2487 8 1 3.9336 0.3073 1.2486 9 6 4.0806 -1.4418 2.4980 10 6 2.0400 -0.7213 1.2492 11 1 1.6767 -1.7490 1.2491 12 8 1.5562 -0.0368 2.4347 13 6 0.3765 -0.4401 2.9323 14 8 -0.2317 -1.3350 2.3947 15 6 -0.1892 0.2234 4.1615 16 6 -1.5315 -0.4195 4.5160 17 6 -2.1062 0.2545 5.7635 18 6 -3.4287 -0.3783 6.1124 19 1 -3.8203 -1.1808 5.5048 20 6 -4.1386 0.0671 7.2072 21 7 -3.6619 1.0445 7.9468 22 14 -5.7781 -0.7169 7.6392 23 1 -6.3352 -0.0636 8.8508 24 1 -6.7223 -0.5464 6.5058 25 1 -5.5799 -2.1645 7.9048 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6765 -0.2073 -2.1393 30 1 1.6766 -1.7488 -1.2493 31 1 3.9329 0.3070 -1.2499 32 1 3.9332 -1.2341 -2.1399 33 1 5.1705 -1.4410 -0.0006 34 1 3.7175 -2.4695 -0.0004 35 1 3.7173 -2.4694 2.4980 36 1 5.1706 -1.4418 2.4979 37 1 3.7169 -0.9282 3.3880 38 1 -0.3351 1.2858 3.9663 39 1 0.5040 0.0986 4.9934 40 1 -1.3853 -1.4819 4.7114 41 1 -2.2249 -0.2951 3.6842 42 1 -2.2526 1.3168 5.5678 43 1 -1.4129 0.1305 6.5955 44 1 -2.8107 1.4519 7.7222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893308666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:48 Heat of formation + Delta-G solvation = -159.328584 kcal Electronic energy + Delta-G solvation = -21135.892169 eV Core-core repulsion = 18050.393916 eV Total energy + Delta-G solvation = -3085.498253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99405 -39.66140 -37.22731 -36.47133 -34.57052 -34.17561 -32.20165 -29.79705 -27.69597 -27.21925 -25.78052 -23.55425 -22.51210 -21.77648 -21.38745 -20.93455 -19.13166 -18.57381 -17.68855 -17.31631 -16.11760 -15.71819 -15.64701 -15.51188 -15.25751 -15.11749 -14.62400 -14.52165 -13.88296 -13.57505 -13.50114 -13.41982 -13.37040 -13.17850 -12.79096 -12.74564 -12.70387 -12.55393 -12.01970 -11.98820 -11.87577 -11.81624 -11.78841 -11.73921 -11.58820 -11.39322 -11.19050 -10.82884 -10.69595 -10.55012 -8.70306 -6.40421 1.17405 1.51905 1.60246 1.64916 1.80314 2.56024 3.14390 3.44398 3.59686 3.61969 3.79175 3.97287 3.97951 4.04349 4.14925 4.26160 4.27285 4.34745 4.43093 4.55144 4.57245 4.67208 4.71316 4.74274 4.80005 4.83611 4.86699 4.91428 4.92180 5.03113 5.12244 5.13901 5.22510 5.24219 5.28034 5.33629 5.36609 5.42819 5.45996 5.58756 5.99482 6.17277 6.57943 6.76044 7.40047 8.71559 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.038346 B = 0.003346 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.011021 B = 8367.221461 C = 8725.045323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.109 4.109 7 C -0.083 4.083 8 H 0.087 0.913 9 C -0.150 4.150 10 C 0.090 3.910 11 H 0.064 0.936 12 O -0.351 6.351 13 C 0.467 3.533 14 O -0.531 6.531 15 C -0.108 4.108 16 C -0.077 4.077 17 C 0.009 3.991 18 C -0.625 4.625 19 H 0.045 0.955 20 C -0.037 4.037 21 N -0.936 5.936 22 Si 1.116 2.884 23 H -0.280 1.280 24 H -0.270 1.270 25 H -0.270 1.270 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.047 0.953 41 H 0.046 0.954 42 H -0.001 1.001 43 H 0.000 1.000 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.324 -2.500 -18.846 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.147 4.147 7 C -0.101 4.101 8 H 0.106 0.894 9 C -0.207 4.207 10 C 0.035 3.965 11 H 0.082 0.918 12 O -0.268 6.268 13 C 0.312 3.688 14 O -0.420 6.420 15 C -0.145 4.145 16 C -0.115 4.115 17 C -0.028 4.028 18 C -0.663 4.663 19 H 0.063 0.937 20 C -0.234 4.234 21 N -0.573 5.573 22 Si 0.937 3.063 23 H -0.205 1.205 24 H -0.196 1.196 25 H -0.196 1.196 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.940 -2.727 -17.971 24.847 hybrid contribution 0.922 -0.057 -0.822 1.237 sum 17.862 -2.784 -18.794 26.077 Atomic orbital electron populations 1.21877 0.95805 1.01478 1.01093 1.21566 0.95225 1.00821 0.94552 0.89726 1.21564 0.96686 1.00295 0.96068 1.21589 0.94172 1.01697 0.98176 1.21609 1.01721 0.98948 0.92379 1.21280 0.90249 1.01796 0.96794 0.89447 1.21829 1.02124 0.99715 0.97018 1.23112 0.95484 0.95920 0.81958 0.91771 1.86534 1.36006 1.60425 1.43870 1.23931 0.78979 0.80800 0.85111 1.90625 1.60024 1.30717 1.60637 1.21495 0.97767 1.01914 0.93364 1.21113 0.93746 0.98941 0.97684 1.19181 0.95210 0.95108 0.93273 1.22500 1.07164 1.21603 1.14982 0.93688 1.27408 1.07237 0.95621 0.93167 1.70917 1.21231 1.24554 1.40609 0.82949 0.71118 0.75571 0.76642 1.20499 1.19562 1.19565 0.95291 0.91071 0.93473 0.90148 0.92379 0.90881 0.89957 0.89155 0.92078 0.93467 0.90285 0.93356 0.86702 0.86601 0.93435 0.93470 0.98224 0.98190 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 7.80 71.98 0.56 -3.13 16 2 C -0.10 -2.13 2.47 -10.79 -0.03 -2.16 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.11 -1.67 5.20 30.59 0.16 -1.51 16 5 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 6 C -0.11 -1.38 5.20 30.59 0.16 -1.22 16 7 C -0.08 -1.43 2.47 -10.78 -0.03 -1.46 16 8 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 9 C -0.15 -2.66 9.05 71.98 0.65 -2.01 16 10 C 0.09 2.12 1.62 30.61 0.05 2.17 16 11 H 0.06 1.78 7.16 -2.39 -0.02 1.76 16 12 O -0.35 -9.97 9.08 -51.49 -0.47 -10.44 16 13 C 0.47 15.59 6.23 71.24 0.44 16.03 16 14 O -0.53 -20.44 13.12 21.98 0.29 -20.15 16 15 C -0.11 -3.65 5.81 29.85 0.17 -3.48 16 16 C -0.08 -3.37 4.44 30.59 0.14 -3.23 16 17 C 0.01 0.49 4.28 29.85 0.13 0.62 16 18 C -0.62 -37.00 9.11 25.60 0.23 -36.77 16 19 H 0.04 2.64 7.74 -2.91 -0.02 2.62 16 20 C -0.04 -2.18 5.46 84.65 0.46 -1.72 16 21 N -0.94 -58.54 13.65 21.45 0.29 -58.25 16 22 Si 1.12 51.46 29.90 68.60 2.05 53.51 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 H 0.03 0.85 6.16 -2.39 -0.01 0.84 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.35 7.50 -2.39 -0.02 1.34 16 29 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.00 7.68 -2.39 -0.02 0.98 16 38 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.05 2.16 8.10 -2.39 -0.02 2.14 16 41 H 0.05 2.14 8.10 -2.39 -0.02 2.12 16 42 H 0.00 -0.03 8.01 -2.39 -0.02 -0.05 16 43 H 0.00 -0.01 8.01 -2.38 -0.02 -0.03 16 44 H 0.26 16.13 7.22 -92.71 -0.67 15.46 16 Total: -1.00 -69.03 343.67 6.48 -62.55 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.03 Total: 11.82 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 3.29 Total: -39.04 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.29 Total: -58.25 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.18 Total: -30.58 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Total: -69.03 6.48 -62.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893308666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.782 kcal (2) G-P(sol) polarization free energy of solvation -69.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds