Wall clock time and date at job start Mon Mar 30 2020 01:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.52996 * 109.46972 * 119.99742 * 2 1 3 5 5 C 1.53002 * 109.46969 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46982 * 299.99739 * 5 4 2 7 7 C 1.52997 * 109.46733 * 60.00516 * 6 5 4 8 8 H 1.09004 * 109.46976 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47812 * 59.99626 * 7 6 5 10 10 C 1.52997 * 109.47415 * 239.99882 * 2 1 3 11 11 O 1.45206 * 109.46989 * 59.99890 * 10 2 1 12 12 C 1.34231 * 116.99738 * 270.00269 * 11 10 2 13 13 O 1.20823 * 120.00276 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99761 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.47033 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46788 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46942 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99960 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99813 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00670 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99677 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47265 * 89.99845 * 21 19 17 23 23 H 1.48508 * 109.47175 * 209.99991 * 21 19 17 24 24 H 1.48503 * 109.47550 * 329.99915 * 21 19 17 25 25 H 1.09004 * 109.46733 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47407 * 299.99771 * 1 2 3 27 27 H 1.09002 * 109.47070 * 60.00171 * 1 2 3 28 28 H 1.08999 * 109.47631 * 60.00790 * 4 2 1 29 29 H 1.09000 * 109.47380 * 299.99696 * 4 2 1 30 30 H 1.09002 * 109.47067 * 180.02562 * 5 4 2 31 31 H 1.09000 * 109.47312 * 60.00061 * 5 4 2 32 32 H 1.08992 * 109.47061 * 300.00292 * 6 5 4 33 33 H 1.09001 * 109.46812 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.46778 * 300.00221 * 9 7 6 35 35 H 1.09001 * 109.46652 * 60.00023 * 9 7 6 36 36 H 1.08992 * 109.47514 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.47140 * 300.00024 * 10 2 1 38 38 H 1.09000 * 109.47410 * 299.99804 * 14 12 11 39 39 H 1.09004 * 109.46977 * 59.99952 * 14 12 11 40 40 H 1.08996 * 109.47493 * 299.99923 * 15 14 12 41 41 H 1.08996 * 109.46572 * 60.00363 * 15 14 12 42 42 H 1.09000 * 109.47730 * 300.00338 * 16 15 14 43 43 H 1.09004 * 109.46902 * 60.00636 * 16 15 14 44 44 H 0.96993 * 120.00446 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5706 -0.7204 -1.2489 8 1 3.9346 -1.2337 -2.1389 9 6 4.0800 0.7223 -1.2487 10 6 2.0401 -0.7212 -1.2492 11 8 1.5561 -0.0368 -2.4348 12 6 0.3764 -0.4401 -2.9323 13 8 -0.2314 -1.3356 -2.3953 14 6 -0.1894 0.2234 -4.1614 15 6 -1.5318 -0.4196 -4.5159 16 6 -2.1064 0.2545 -5.7634 17 6 -3.4289 -0.3784 -6.1122 18 1 -3.8205 -1.1808 -5.5046 19 6 -4.1388 0.0670 -7.2070 20 7 -3.6618 1.0437 -7.9472 21 14 -5.7784 -0.7170 -7.6389 22 1 -6.8724 0.0094 -6.9456 23 1 -5.9897 -0.6459 -9.1071 24 1 -5.7767 -2.1380 -7.2074 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6768 -1.7489 1.2493 29 1 1.6767 -0.2073 2.1392 30 1 3.9333 -1.2348 2.1394 31 1 3.9330 0.3072 1.2498 32 1 3.7175 -2.4693 0.0002 33 1 5.1705 -1.4408 0.0004 34 1 3.7163 1.2359 -0.3587 35 1 5.1700 0.7227 -1.2485 36 1 3.7171 1.2360 -2.1388 37 1 1.6768 -1.7489 -1.2492 38 1 -0.3353 1.2858 -3.9663 39 1 0.5038 0.0986 -4.9933 40 1 -1.3855 -1.4819 -4.7112 41 1 -2.2250 -0.2951 -3.6841 42 1 -2.2527 1.3167 -5.5678 43 1 -1.4132 0.1303 -6.5954 44 1 -4.1614 1.3572 -8.7172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893308667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:43 Heat of formation + Delta-G solvation = -135.518562 kcal Electronic energy + Delta-G solvation = -21150.459378 eV Core-core repulsion = 18065.993605 eV Total energy + Delta-G solvation = -3084.465773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83308 -38.81644 -35.96349 -34.27846 -33.36211 -32.11916 -31.15311 -28.23374 -26.83897 -26.52780 -24.16269 -22.52147 -21.55541 -20.79763 -19.74740 -19.00684 -17.40423 -16.53112 -16.30148 -15.92974 -15.22006 -14.82799 -14.56956 -14.38006 -14.06277 -13.62985 -13.30828 -12.86680 -12.68816 -12.40844 -12.25728 -12.18705 -11.91955 -11.89420 -11.80874 -11.44497 -11.18411 -11.05448 -10.83101 -10.78979 -10.66063 -10.58045 -10.55619 -10.40504 -10.08544 -9.82213 -9.71055 -9.37457 -9.07742 -8.33552 -5.98904 -4.00781 2.58186 2.91333 3.34171 3.40094 3.44635 4.35423 4.40211 4.47927 4.55453 4.78430 4.84931 4.97276 5.05239 5.11075 5.23556 5.29692 5.37192 5.38661 5.53803 5.56346 5.64189 5.65456 5.67932 5.72573 5.74025 5.75284 5.88382 5.94051 5.99378 6.05455 6.09356 6.16479 6.26791 6.35974 6.64399 6.74595 6.84612 7.09824 7.68005 7.79943 8.00998 8.13451 8.43906 9.06039 9.63318 11.12585 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042395 B = 0.003277 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.302075 B = 8543.520400 C = 8851.784074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 H 0.080 0.920 4 C -0.111 4.111 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.088 4.088 8 H 0.077 0.923 9 C -0.148 4.148 10 C 0.097 3.903 11 O -0.355 6.355 12 C 0.458 3.542 13 O -0.505 6.505 14 C -0.113 4.113 15 C -0.098 4.098 16 C 0.021 3.979 17 C -0.519 4.519 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.010 -1.306 17.428 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.106 4.106 8 H 0.095 0.905 9 C -0.205 4.205 10 C 0.042 3.958 11 O -0.273 6.273 12 C 0.302 3.698 13 O -0.392 6.392 14 C -0.151 4.151 15 C -0.136 4.136 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.804 -1.487 17.460 24.278 hybrid contribution -0.968 -0.436 -0.282 1.099 sum 15.836 -1.923 17.178 23.442 Atomic orbital electron populations 1.21916 0.94267 1.02830 1.01483 1.21559 0.96550 1.00463 0.93936 0.90154 1.21560 0.95335 1.00942 0.97045 1.21629 0.95679 1.01206 0.97650 1.21556 1.00557 0.99212 0.93678 1.21195 0.92628 0.97902 0.98890 0.90465 1.21886 1.00325 0.95540 1.02749 1.22722 0.93587 0.96906 0.82625 1.86579 1.37427 1.60484 1.42794 1.24306 0.78532 0.81431 0.85534 1.90623 1.59179 1.29516 1.59908 1.21684 0.99854 1.01478 0.92043 1.21557 0.91651 0.99774 1.00620 1.19128 0.95626 0.95822 0.91051 1.21242 1.04590 1.18669 1.11255 0.92558 1.25015 0.98027 0.95133 0.96299 1.69956 1.38642 1.27493 1.17521 0.86585 0.84120 0.79827 0.77437 1.20660 1.21234 1.19835 0.91661 0.92854 0.92803 0.91703 0.91464 0.91834 0.91381 0.91735 0.91212 0.92122 0.92848 0.91667 0.89984 0.88316 0.88288 0.92495 0.92504 0.96404 0.96389 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 7.79 37.16 0.29 -1.59 16 2 C -0.11 -1.16 2.19 -90.62 -0.20 -1.36 16 3 H 0.08 0.85 6.43 -51.93 -0.33 0.52 16 4 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 5 C -0.12 -0.91 5.65 -26.73 -0.15 -1.06 16 6 C -0.11 -0.87 5.45 -26.73 -0.15 -1.01 16 7 C -0.09 -0.84 2.94 -90.60 -0.27 -1.11 16 8 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 9 C -0.15 -1.31 8.36 37.16 0.31 -1.00 16 10 C 0.10 1.17 1.87 -26.71 -0.05 1.12 16 11 O -0.36 -5.11 9.08 -39.26 -0.36 -5.47 16 12 C 0.46 7.60 6.23 36.00 0.22 7.82 16 13 O -0.51 -9.48 13.12 -18.75 -0.25 -9.72 16 14 C -0.11 -1.92 5.81 -27.88 -0.16 -2.08 16 15 C -0.10 -2.09 4.44 -26.73 -0.12 -2.21 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.06 0.91 7.51 -51.93 -0.39 0.52 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.79 6.16 -51.93 -0.32 0.47 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 37 H 0.08 1.12 7.16 -51.93 -0.37 0.75 16 38 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -30.90 337.96 -8.60 -39.50 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -7.85 Total: -3.14 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -0.96 Total: -16.91 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.60 Total: -15.19 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.90 -8.60 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893308667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.014 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds