Wall clock time and date at job start Mon Mar 30 2020 01:03:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.46986 * 2 1
4 4 C 1.52996 * 109.46972 * 119.99742 * 2 1 3
5 5 C 1.53002 * 109.46969 * 180.02562 * 4 2 1
6 6 C 1.53005 * 109.46982 * 299.99739 * 5 4 2
7 7 C 1.52997 * 109.46733 * 60.00516 * 6 5 4
8 8 H 1.09004 * 109.46976 * 179.97438 * 7 6 5
9 9 C 1.53001 * 109.47812 * 59.99626 * 7 6 5
10 10 C 1.52997 * 109.47415 * 239.99882 * 2 1 3
11 11 O 1.45206 * 109.46989 * 59.99890 * 10 2 1
12 12 C 1.34231 * 116.99738 * 270.00269 * 11 10 2
13 13 O 1.20823 * 120.00276 * 359.97438 * 12 11 10
14 14 C 1.50699 * 119.99761 * 180.02562 * 12 11 10
15 15 C 1.53006 * 109.47033 * 179.97438 * 14 12 11
16 16 C 1.53000 * 109.46788 * 179.97438 * 15 14 12
17 17 C 1.50706 * 109.46942 * 180.02562 * 16 15 14
18 18 H 1.08001 * 119.99960 * 0.02562 * 17 16 15
19 19 C 1.37872 * 119.99813 * 180.02562 * 17 16 15
20 20 N 1.31510 * 120.00670 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 119.99677 * 180.02562 * 19 17 16
22 22 H 1.48499 * 109.47265 * 89.99845 * 21 19 17
23 23 H 1.48508 * 109.47175 * 209.99991 * 21 19 17
24 24 H 1.48503 * 109.47550 * 329.99915 * 21 19 17
25 25 H 1.09004 * 109.46733 * 180.02562 * 1 2 3
26 26 H 1.08996 * 109.47407 * 299.99771 * 1 2 3
27 27 H 1.09002 * 109.47070 * 60.00171 * 1 2 3
28 28 H 1.08999 * 109.47631 * 60.00790 * 4 2 1
29 29 H 1.09000 * 109.47380 * 299.99696 * 4 2 1
30 30 H 1.09002 * 109.47067 * 180.02562 * 5 4 2
31 31 H 1.09000 * 109.47312 * 60.00061 * 5 4 2
32 32 H 1.08992 * 109.47061 * 300.00292 * 6 5 4
33 33 H 1.09001 * 109.46812 * 179.97438 * 6 5 4
34 34 H 1.08996 * 109.46778 * 300.00221 * 9 7 6
35 35 H 1.09001 * 109.46652 * 60.00023 * 9 7 6
36 36 H 1.08992 * 109.47514 * 179.97438 * 9 7 6
37 37 H 1.09000 * 109.47140 * 300.00024 * 10 2 1
38 38 H 1.09000 * 109.47410 * 299.99804 * 14 12 11
39 39 H 1.09004 * 109.46977 * 59.99952 * 14 12 11
40 40 H 1.08996 * 109.47493 * 299.99923 * 15 14 12
41 41 H 1.08996 * 109.46572 * 60.00363 * 15 14 12
42 42 H 1.09000 * 109.47730 * 300.00338 * 16 15 14
43 43 H 1.09004 * 109.46902 * 60.00636 * 16 15 14
44 44 H 0.96993 * 120.00446 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5700 -0.7206 1.2496
6 6 4.0805 -1.4416 0.0004
7 6 3.5706 -0.7204 -1.2489
8 1 3.9346 -1.2337 -2.1389
9 6 4.0800 0.7223 -1.2487
10 6 2.0401 -0.7212 -1.2492
11 8 1.5561 -0.0368 -2.4348
12 6 0.3764 -0.4401 -2.9323
13 8 -0.2314 -1.3356 -2.3953
14 6 -0.1894 0.2234 -4.1614
15 6 -1.5318 -0.4196 -4.5159
16 6 -2.1064 0.2545 -5.7634
17 6 -3.4289 -0.3784 -6.1122
18 1 -3.8205 -1.1808 -5.5046
19 6 -4.1388 0.0670 -7.2070
20 7 -3.6618 1.0437 -7.9472
21 14 -5.7784 -0.7170 -7.6389
22 1 -6.8724 0.0094 -6.9456
23 1 -5.9897 -0.6459 -9.1071
24 1 -5.7767 -2.1380 -7.2074
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 1.6768 -1.7489 1.2493
29 1 1.6767 -0.2073 2.1392
30 1 3.9333 -1.2348 2.1394
31 1 3.9330 0.3072 1.2498
32 1 3.7175 -2.4693 0.0002
33 1 5.1705 -1.4408 0.0004
34 1 3.7163 1.2359 -0.3587
35 1 5.1700 0.7227 -1.2485
36 1 3.7171 1.2360 -2.1388
37 1 1.6768 -1.7489 -1.2492
38 1 -0.3353 1.2858 -3.9663
39 1 0.5038 0.0986 -4.9933
40 1 -1.3855 -1.4819 -4.7112
41 1 -2.2250 -0.2951 -3.6841
42 1 -2.2527 1.3167 -5.5678
43 1 -1.4132 0.1303 -6.5954
44 1 -4.1614 1.3572 -8.7172
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000893308667.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:03:43
Heat of formation + Delta-G solvation = -150.565971 kcal
Electronic energy + Delta-G solvation = -21151.111883 eV
Core-core repulsion = 18065.993605 eV
Total energy + Delta-G solvation = -3085.118278 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.183 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.97567 -39.82393 -37.18585 -36.16298 -34.23267 -34.06530 -31.96785 -30.01499
-27.70439 -27.46454 -25.99171 -23.53557 -22.63791 -22.10301 -21.26272 -19.81576
-18.76467 -18.41768 -17.58911 -17.24946 -16.48611 -16.02829 -15.83134 -15.62031
-15.20643 -14.61315 -14.34493 -14.30166 -13.82890 -13.77236 -13.58928 -13.31859
-13.22718 -13.12367 -12.75745 -12.66002 -12.55059 -12.53485 -12.45284 -11.99630
-11.84539 -11.75199 -11.60768 -11.55238 -11.45244 -11.28193 -11.17551 -11.04830
-10.71687 -10.55348 -8.21012 -6.31302 1.24448 1.39714 1.40768 1.52133
1.72093 2.41240 3.12269 3.53694 3.60371 3.69044 3.83205 4.07893
4.08205 4.16059 4.18035 4.26764 4.36220 4.41925 4.47559 4.63426
4.65279 4.67926 4.76246 4.84102 4.88316 4.97845 4.99614 5.03044
5.06757 5.13068 5.15621 5.22157 5.25624 5.28957 5.35141 5.37923
5.50378 5.55553 5.63110 5.71248 5.84799 6.24978 6.82163 6.84737
7.37505 8.90691
Molecular weight = 268.18amu
Principal moments of inertia in cm(-1)
A = 0.042395 B = 0.003277 C = 0.003162
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 660.302075 B = 8543.520400 C = 8851.784074
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.103 4.103
3 H 0.088 0.912
4 C -0.108 4.108
5 C -0.121 4.121
6 C -0.110 4.110
7 C -0.086 4.086
8 H 0.072 0.928
9 C -0.145 4.145
10 C 0.089 3.911
11 O -0.351 6.351
12 C 0.466 3.534
13 O -0.532 6.532
14 C -0.107 4.107
15 C -0.083 4.083
16 C 0.025 3.975
17 C -0.547 4.547
18 H 0.053 0.947
19 C 0.003 3.997
20 N -0.929 5.929
21 Si 0.962 3.038
22 H -0.272 1.272
23 H -0.279 1.279
24 H -0.267 1.267
25 H 0.046 0.954
26 H 0.069 0.931
27 H 0.029 0.971
28 H 0.057 0.943
29 H 0.079 0.921
30 H 0.080 0.920
31 H 0.076 0.924
32 H 0.060 0.940
33 H 0.088 0.912
34 H 0.066 0.934
35 H 0.070 0.930
36 H 0.049 0.951
37 H 0.063 0.937
38 H 0.114 0.886
39 H 0.115 0.885
40 H 0.047 0.953
41 H 0.047 0.953
42 H 0.002 0.998
43 H 0.003 0.997
44 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.064 -1.341 18.703 26.036
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.121 4.121
3 H 0.106 0.894
4 C -0.146 4.146
5 C -0.158 4.158
6 C -0.147 4.147
7 C -0.104 4.104
8 H 0.091 0.909
9 C -0.202 4.202
10 C 0.035 3.965
11 O -0.268 6.268
12 C 0.311 3.689
13 O -0.421 6.421
14 C -0.145 4.145
15 C -0.121 4.121
16 C -0.012 4.012
17 C -0.585 4.585
18 H 0.072 0.928
19 C -0.195 4.195
20 N -0.570 5.570
21 Si 0.787 3.213
22 H -0.197 1.197
23 H -0.204 1.204
24 H -0.192 1.192
25 H 0.065 0.935
26 H 0.088 0.912
27 H 0.048 0.952
28 H 0.076 0.924
29 H 0.098 0.902
30 H 0.099 0.901
31 H 0.095 0.905
32 H 0.079 0.921
33 H 0.107 0.893
34 H 0.085 0.915
35 H 0.089 0.911
36 H 0.068 0.932
37 H 0.081 0.919
38 H 0.132 0.868
39 H 0.133 0.867
40 H 0.066 0.934
41 H 0.066 0.934
42 H 0.021 0.979
43 H 0.021 0.979
44 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 17.880 -1.517 18.746 25.950
hybrid contribution -1.262 -0.412 -0.661 1.483
sum 16.619 -1.929 18.085 24.637
Atomic orbital electron populations
1.21885 0.95876 1.01452 1.01091 1.21571 0.95094 1.01052 0.94409
0.89393 1.21558 0.96642 1.00284 0.96116 1.21630 0.94228 1.01896
0.98024 1.21574 1.01642 0.98746 0.92766 1.21249 0.90370 0.98874
0.99939 0.90934 1.21871 1.01450 0.94614 1.02290 1.23046 0.95453
0.95836 0.82181 1.86552 1.36088 1.60421 1.43780 1.24028 0.78942
0.80798 0.85146 1.90620 1.60058 1.30731 1.60696 1.21497 0.97931
1.01898 0.93129 1.21241 0.93690 0.99005 0.98172 1.19011 0.94670
0.95071 0.92406 1.21665 1.06079 1.19030 1.11754 0.92827 1.25911
1.01942 0.95581 0.96078 1.70064 1.40282 1.28623 1.17989 0.85488
0.79311 0.79047 0.77457 1.19715 1.20380 1.19170 0.93519 0.91166
0.95189 0.92444 0.90202 0.90144 0.90536 0.92093 0.89298 0.91471
0.91059 0.93221 0.91864 0.86761 0.86667 0.93441 0.93449 0.97932
0.97909 0.92629
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.71 7.79 71.98 0.56 -3.15 16
2 C -0.10 -2.13 2.19 -10.80 -0.02 -2.15 16
3 H 0.09 1.71 6.43 -2.39 -0.02 1.69 16
4 C -0.11 -1.68 5.20 30.59 0.16 -1.52 16
5 C -0.12 -1.40 5.65 30.60 0.17 -1.22 16
6 C -0.11 -1.42 5.45 30.59 0.17 -1.26 16
7 C -0.09 -1.51 2.94 -10.78 -0.03 -1.54 16
8 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16
9 C -0.15 -2.26 8.36 71.98 0.60 -1.66 16
10 C 0.09 2.12 1.87 30.61 0.06 2.18 16
11 O -0.35 -10.02 9.08 -51.43 -0.47 -10.49 16
12 C 0.47 15.60 6.23 71.24 0.44 16.04 16
13 O -0.53 -20.47 13.12 21.97 0.29 -20.18 16
14 C -0.11 -3.65 5.81 29.85 0.17 -3.47 16
15 C -0.08 -3.62 4.44 30.60 0.14 -3.49 16
16 C 0.03 1.35 4.97 29.85 0.15 1.49 16
17 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16
18 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16
19 C 0.00 0.17 5.46 84.65 0.46 0.63 16
20 N -0.93 -56.52 13.29 21.44 0.28 -56.23 16
21 Si 0.96 45.07 29.54 68.60 2.03 47.10 16
22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16
23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
25 H 0.05 1.34 7.51 -2.39 -0.02 1.32 16
26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
27 H 0.03 0.88 6.16 -2.39 -0.01 0.87 16
28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16
31 H 0.08 0.80 6.43 -2.39 -0.02 0.78 16
32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
34 H 0.07 0.95 4.81 -2.39 -0.01 0.94 16
35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
36 H 0.05 0.93 7.68 -2.39 -0.02 0.91 16
37 H 0.06 1.75 7.16 -2.39 -0.02 1.74 16
38 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16
39 H 0.12 3.56 8.14 -2.38 -0.02 3.54 16
40 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16
41 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16
42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16
43 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16
44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16
Total: -1.00 -66.84 337.96 6.34 -60.50
By element:
Atomic # 1 Polarization: 9.26 SS G_CDS: 0.95 Total: 10.21 kcal
Atomic # 6 Polarization: -34.16 SS G_CDS: 3.26 Total: -30.90 kcal
Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.23 kcal
Atomic # 8 Polarization: -30.49 SS G_CDS: -0.18 Total: -30.67 kcal
Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal
Total: -66.84 6.34 -60.50 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000893308667.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.066 kcal
(2) G-P(sol) polarization free energy of solvation -66.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.905 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.500 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.566 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds