Wall clock time and date at job start Mon Mar 30 2020 01:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46986 * 2 1 4 4 C 1.52996 * 109.46972 * 119.99742 * 2 1 3 5 5 C 1.53002 * 109.46969 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46982 * 299.99739 * 5 4 2 7 7 C 1.52997 * 109.46733 * 60.00516 * 6 5 4 8 8 H 1.09004 * 109.46976 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47812 * 59.99626 * 7 6 5 10 10 C 1.52997 * 109.47415 * 239.99882 * 2 1 3 11 11 O 1.45206 * 109.46989 * 59.99890 * 10 2 1 12 12 C 1.34231 * 116.99738 * 270.00269 * 11 10 2 13 13 O 1.20823 * 120.00276 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99761 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.47033 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46788 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46942 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99960 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99813 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00670 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99677 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47265 * 89.99845 * 21 19 17 23 23 H 1.48508 * 109.47175 * 209.99991 * 21 19 17 24 24 H 1.48503 * 109.47550 * 329.99915 * 21 19 17 25 25 H 1.09004 * 109.46733 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47407 * 299.99771 * 1 2 3 27 27 H 1.09002 * 109.47070 * 60.00171 * 1 2 3 28 28 H 1.08999 * 109.47631 * 60.00790 * 4 2 1 29 29 H 1.09000 * 109.47380 * 299.99696 * 4 2 1 30 30 H 1.09002 * 109.47067 * 180.02562 * 5 4 2 31 31 H 1.09000 * 109.47312 * 60.00061 * 5 4 2 32 32 H 1.08992 * 109.47061 * 300.00292 * 6 5 4 33 33 H 1.09001 * 109.46812 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.46778 * 300.00221 * 9 7 6 35 35 H 1.09001 * 109.46652 * 60.00023 * 9 7 6 36 36 H 1.08992 * 109.47514 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.47140 * 300.00024 * 10 2 1 38 38 H 1.09000 * 109.47410 * 299.99804 * 14 12 11 39 39 H 1.09004 * 109.46977 * 59.99952 * 14 12 11 40 40 H 1.08996 * 109.47493 * 299.99923 * 15 14 12 41 41 H 1.08996 * 109.46572 * 60.00363 * 15 14 12 42 42 H 1.09000 * 109.47730 * 300.00338 * 16 15 14 43 43 H 1.09004 * 109.46902 * 60.00636 * 16 15 14 44 44 H 0.96993 * 120.00446 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5706 -0.7204 -1.2489 8 1 3.9346 -1.2337 -2.1389 9 6 4.0800 0.7223 -1.2487 10 6 2.0401 -0.7212 -1.2492 11 8 1.5561 -0.0368 -2.4348 12 6 0.3764 -0.4401 -2.9323 13 8 -0.2314 -1.3356 -2.3953 14 6 -0.1894 0.2234 -4.1614 15 6 -1.5318 -0.4196 -4.5159 16 6 -2.1064 0.2545 -5.7634 17 6 -3.4289 -0.3784 -6.1122 18 1 -3.8205 -1.1808 -5.5046 19 6 -4.1388 0.0670 -7.2070 20 7 -3.6618 1.0437 -7.9472 21 14 -5.7784 -0.7170 -7.6389 22 1 -6.8724 0.0094 -6.9456 23 1 -5.9897 -0.6459 -9.1071 24 1 -5.7767 -2.1380 -7.2074 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6768 -1.7489 1.2493 29 1 1.6767 -0.2073 2.1392 30 1 3.9333 -1.2348 2.1394 31 1 3.9330 0.3072 1.2498 32 1 3.7175 -2.4693 0.0002 33 1 5.1705 -1.4408 0.0004 34 1 3.7163 1.2359 -0.3587 35 1 5.1700 0.7227 -1.2485 36 1 3.7171 1.2360 -2.1388 37 1 1.6768 -1.7489 -1.2492 38 1 -0.3353 1.2858 -3.9663 39 1 0.5038 0.0986 -4.9933 40 1 -1.3855 -1.4819 -4.7112 41 1 -2.2250 -0.2951 -3.6841 42 1 -2.2527 1.3167 -5.5678 43 1 -1.4132 0.1303 -6.5954 44 1 -4.1614 1.3572 -8.7172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893308667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:43 Heat of formation + Delta-G solvation = -150.565971 kcal Electronic energy + Delta-G solvation = -21151.111883 eV Core-core repulsion = 18065.993605 eV Total energy + Delta-G solvation = -3085.118278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.97567 -39.82393 -37.18585 -36.16298 -34.23267 -34.06530 -31.96785 -30.01499 -27.70439 -27.46454 -25.99171 -23.53557 -22.63791 -22.10301 -21.26272 -19.81576 -18.76467 -18.41768 -17.58911 -17.24946 -16.48611 -16.02829 -15.83134 -15.62031 -15.20643 -14.61315 -14.34493 -14.30166 -13.82890 -13.77236 -13.58928 -13.31859 -13.22718 -13.12367 -12.75745 -12.66002 -12.55059 -12.53485 -12.45284 -11.99630 -11.84539 -11.75199 -11.60768 -11.55238 -11.45244 -11.28193 -11.17551 -11.04830 -10.71687 -10.55348 -8.21012 -6.31302 1.24448 1.39714 1.40768 1.52133 1.72093 2.41240 3.12269 3.53694 3.60371 3.69044 3.83205 4.07893 4.08205 4.16059 4.18035 4.26764 4.36220 4.41925 4.47559 4.63426 4.65279 4.67926 4.76246 4.84102 4.88316 4.97845 4.99614 5.03044 5.06757 5.13068 5.15621 5.22157 5.25624 5.28957 5.35141 5.37923 5.50378 5.55553 5.63110 5.71248 5.84799 6.24978 6.82163 6.84737 7.37505 8.90691 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042395 B = 0.003277 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.302075 B = 8543.520400 C = 8851.784074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.110 4.110 7 C -0.086 4.086 8 H 0.072 0.928 9 C -0.145 4.145 10 C 0.089 3.911 11 O -0.351 6.351 12 C 0.466 3.534 13 O -0.532 6.532 14 C -0.107 4.107 15 C -0.083 4.083 16 C 0.025 3.975 17 C -0.547 4.547 18 H 0.053 0.947 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.962 3.038 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.029 0.971 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.064 -1.341 18.703 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.147 4.147 7 C -0.104 4.104 8 H 0.091 0.909 9 C -0.202 4.202 10 C 0.035 3.965 11 O -0.268 6.268 12 C 0.311 3.689 13 O -0.421 6.421 14 C -0.145 4.145 15 C -0.121 4.121 16 C -0.012 4.012 17 C -0.585 4.585 18 H 0.072 0.928 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.787 3.213 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.192 1.192 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.880 -1.517 18.746 25.950 hybrid contribution -1.262 -0.412 -0.661 1.483 sum 16.619 -1.929 18.085 24.637 Atomic orbital electron populations 1.21885 0.95876 1.01452 1.01091 1.21571 0.95094 1.01052 0.94409 0.89393 1.21558 0.96642 1.00284 0.96116 1.21630 0.94228 1.01896 0.98024 1.21574 1.01642 0.98746 0.92766 1.21249 0.90370 0.98874 0.99939 0.90934 1.21871 1.01450 0.94614 1.02290 1.23046 0.95453 0.95836 0.82181 1.86552 1.36088 1.60421 1.43780 1.24028 0.78942 0.80798 0.85146 1.90620 1.60058 1.30731 1.60696 1.21497 0.97931 1.01898 0.93129 1.21241 0.93690 0.99005 0.98172 1.19011 0.94670 0.95071 0.92406 1.21665 1.06079 1.19030 1.11754 0.92827 1.25911 1.01942 0.95581 0.96078 1.70064 1.40282 1.28623 1.17989 0.85488 0.79311 0.79047 0.77457 1.19715 1.20380 1.19170 0.93519 0.91166 0.95189 0.92444 0.90202 0.90144 0.90536 0.92093 0.89298 0.91471 0.91059 0.93221 0.91864 0.86761 0.86667 0.93441 0.93449 0.97932 0.97909 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 7.79 71.98 0.56 -3.15 16 2 C -0.10 -2.13 2.19 -10.80 -0.02 -2.15 16 3 H 0.09 1.71 6.43 -2.39 -0.02 1.69 16 4 C -0.11 -1.68 5.20 30.59 0.16 -1.52 16 5 C -0.12 -1.40 5.65 30.60 0.17 -1.22 16 6 C -0.11 -1.42 5.45 30.59 0.17 -1.26 16 7 C -0.09 -1.51 2.94 -10.78 -0.03 -1.54 16 8 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 9 C -0.15 -2.26 8.36 71.98 0.60 -1.66 16 10 C 0.09 2.12 1.87 30.61 0.06 2.18 16 11 O -0.35 -10.02 9.08 -51.43 -0.47 -10.49 16 12 C 0.47 15.60 6.23 71.24 0.44 16.04 16 13 O -0.53 -20.47 13.12 21.97 0.29 -20.18 16 14 C -0.11 -3.65 5.81 29.85 0.17 -3.47 16 15 C -0.08 -3.62 4.44 30.60 0.14 -3.49 16 16 C 0.03 1.35 4.97 29.85 0.15 1.49 16 17 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 18 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 19 C 0.00 0.17 5.46 84.65 0.46 0.63 16 20 N -0.93 -56.52 13.29 21.44 0.28 -56.23 16 21 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H 0.05 1.34 7.51 -2.39 -0.02 1.32 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.03 0.88 6.16 -2.39 -0.01 0.87 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.80 6.43 -2.39 -0.02 0.78 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.95 4.81 -2.39 -0.01 0.94 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.93 7.68 -2.39 -0.02 0.91 16 37 H 0.06 1.75 7.16 -2.39 -0.02 1.74 16 38 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 39 H 0.12 3.56 8.14 -2.38 -0.02 3.54 16 40 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 41 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -66.84 337.96 6.34 -60.50 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.95 Total: 10.21 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 3.26 Total: -30.90 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.18 Total: -30.67 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.84 6.34 -60.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893308667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.066 kcal (2) G-P(sol) polarization free energy of solvation -66.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds