Wall clock time and date at job start Mon Mar 30 2020 01:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46687 * 2 1 4 4 C 1.52997 * 109.47259 * 239.99328 * 2 1 3 5 5 C 1.52998 * 109.47436 * 300.00623 * 4 2 1 6 6 C 1.53006 * 109.46777 * 299.99559 * 5 4 2 7 7 C 1.52997 * 109.46778 * 60.00038 * 6 5 4 8 8 H 1.08998 * 109.47303 * 60.00343 * 7 6 5 9 9 C 1.53008 * 109.47065 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47678 * 300.00050 * 7 6 5 11 11 O 1.45192 * 109.47461 * 180.02562 * 10 7 6 12 12 C 1.34231 * 117.00296 * 149.99721 * 11 10 7 13 13 O 1.20827 * 119.99690 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00001 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.46648 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46852 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47207 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99603 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99776 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99769 * 21 19 17 25 25 H 1.08998 * 109.47322 * 300.00219 * 1 2 3 26 26 H 1.09000 * 109.46527 * 60.00418 * 1 2 3 27 27 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47303 * 179.97438 * 4 2 1 29 29 H 1.09006 * 109.46726 * 60.00083 * 4 2 1 30 30 H 1.08998 * 109.47034 * 179.97438 * 5 4 2 31 31 H 1.08991 * 109.47539 * 59.99720 * 5 4 2 32 32 H 1.08998 * 109.46924 * 300.00149 * 6 5 4 33 33 H 1.08999 * 109.46717 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47403 * 180.02562 * 9 7 6 35 35 H 1.08999 * 109.46761 * 300.00181 * 9 7 6 36 36 H 1.08998 * 109.46593 * 60.00138 * 9 7 6 37 37 H 1.09005 * 109.46880 * 300.00076 * 10 7 6 38 38 H 1.08999 * 109.47182 * 60.00498 * 14 12 11 39 39 H 1.08998 * 109.47188 * 300.00040 * 14 12 11 40 40 H 1.08993 * 109.47525 * 60.00032 * 15 14 12 41 41 H 1.09006 * 109.47247 * 299.99482 * 15 14 12 42 42 H 1.09005 * 109.47493 * 59.99815 * 16 15 14 43 43 H 1.08998 * 109.47006 * 299.99778 * 16 15 14 44 44 H 0.97001 * 119.99667 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1638 -1.2491 6 6 2.0400 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2494 9 6 2.0395 -2.8852 2.4987 10 6 2.0399 -0.7212 1.2493 11 8 1.5564 -0.0368 2.4350 12 6 2.3300 0.9409 2.9325 13 8 3.3763 1.2161 2.3945 14 6 1.8928 1.6961 4.1612 15 6 2.9461 2.7480 4.5147 16 6 2.5027 3.5144 5.7625 17 6 3.5404 4.5501 6.1113 18 1 4.4276 4.6512 5.5039 19 6 3.3576 5.3677 7.2063 20 7 2.2773 5.2441 7.9462 21 14 4.6435 6.6519 7.6381 22 1 5.7555 6.5888 6.6558 23 1 5.1714 6.3853 9.0003 24 1 4.0264 8.0021 7.6018 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 -0.7210 -1.2494 29 1 1.6767 -0.2076 -2.1392 30 1 1.8930 -2.6775 -2.1393 31 1 0.4401 -2.1638 -1.2492 32 1 3.1300 -2.8850 0.0002 33 1 1.6770 -3.9128 0.0000 34 1 1.6758 -2.3716 3.3887 35 1 1.6757 -3.9127 2.4985 36 1 3.1294 -2.8855 2.4989 37 1 3.1300 -0.7212 1.2494 38 1 1.7790 1.0014 4.9933 39 1 0.9400 2.1880 3.9655 40 1 3.0596 3.4426 3.6826 41 1 3.8992 2.2564 4.7104 42 1 2.3895 2.8195 6.5947 43 1 1.5496 4.0059 5.5674 44 1 1.6094 4.5775 7.7217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893308668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:46 Heat of formation + Delta-G solvation = -141.619840 kcal Electronic energy + Delta-G solvation = -21059.721454 eV Core-core repulsion = 17974.991109 eV Total energy + Delta-G solvation = -3084.730344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80820 -38.92917 -36.04567 -34.54361 -33.47731 -32.22224 -31.19681 -28.04063 -26.85667 -26.48155 -23.94327 -22.69406 -21.47804 -21.09051 -19.89104 -19.06952 -17.49765 -16.82397 -16.21923 -16.16377 -15.30211 -15.00633 -14.44742 -14.20938 -13.74382 -13.69098 -13.48463 -13.11366 -12.98514 -12.80817 -12.43386 -12.19652 -11.92276 -11.86749 -11.52078 -11.49323 -11.30239 -11.11288 -11.05451 -10.93172 -10.71661 -10.69079 -10.35941 -10.18229 -10.10081 -9.95030 -9.85563 -9.76000 -8.53377 -8.30014 -6.34285 -4.02876 2.49458 2.83417 3.46640 3.50437 3.64732 4.30194 4.36838 4.50500 4.57167 4.72817 4.79349 4.92470 5.00453 5.07327 5.18022 5.23800 5.34549 5.41496 5.42768 5.50163 5.53857 5.56339 5.60778 5.62237 5.67855 5.69608 5.80928 5.89277 5.92559 5.99029 6.03090 6.10547 6.11841 6.24740 6.50133 6.64072 6.68905 6.93133 7.41450 7.52097 8.04393 8.24314 8.50546 8.91445 9.69002 11.06760 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.003227 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.237738 B = 8675.330443 C = 8833.333897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.088 4.088 8 H 0.084 0.916 9 C -0.150 4.150 10 C 0.097 3.903 11 O -0.353 6.353 12 C 0.459 3.541 13 O -0.508 6.508 14 C -0.113 4.113 15 C -0.092 4.092 16 C 0.007 3.993 17 C -0.601 4.601 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.916 5.916 21 Si 1.074 2.926 22 H -0.289 1.289 23 H -0.287 1.287 24 H -0.287 1.287 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 -17.405 -17.460 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.162 4.162 6 C -0.149 4.149 7 C -0.107 4.107 8 H 0.102 0.898 9 C -0.207 4.207 10 C 0.043 3.957 11 O -0.270 6.270 12 C 0.303 3.697 13 O -0.395 6.395 14 C -0.151 4.151 15 C -0.130 4.130 16 C -0.030 4.030 17 C -0.639 4.639 18 H 0.069 0.931 19 C -0.190 4.190 20 N -0.552 5.552 21 Si 0.903 3.097 22 H -0.215 1.215 23 H -0.213 1.213 24 H -0.213 1.213 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.570 -16.149 -16.574 23.414 hybrid contribution -0.268 -1.182 -1.197 1.703 sum -3.838 -17.331 -17.770 25.117 Atomic orbital electron populations 1.21878 0.94423 1.02121 1.01987 1.21494 0.97101 1.00046 0.94079 0.90642 1.21527 1.00853 0.95524 0.97034 1.21624 1.01291 0.95523 0.97720 1.21585 1.01092 0.98919 0.93340 1.21241 1.01695 0.92071 0.95647 0.89792 1.21827 1.01115 1.00047 0.97703 1.22702 0.99564 0.91041 0.82442 1.86570 1.50532 1.47106 1.42838 1.24297 0.82068 0.77787 0.85590 1.90627 1.24181 1.64606 1.60115 1.21681 1.02828 0.98417 0.92179 1.21423 0.96156 0.95258 1.00132 1.19260 0.96945 0.95003 0.91747 1.22107 1.07056 1.19978 1.14737 0.93109 1.25864 1.00168 0.99665 0.93290 1.70731 1.09359 1.35343 1.39783 0.83473 0.74777 0.75657 0.75805 1.21488 1.21347 1.21341 0.92028 0.92785 0.92027 0.91723 0.91398 0.91777 0.91365 0.91701 0.91180 0.91770 0.92412 0.92817 0.90000 0.88296 0.88298 0.92316 0.92316 0.97292 0.97292 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.36 37.16 0.31 -1.12 16 2 C -0.11 -1.19 2.92 -90.62 -0.26 -1.45 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -0.98 5.45 -26.73 -0.15 -1.12 16 5 C -0.12 -0.90 5.65 -26.73 -0.15 -1.05 16 6 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 7 C -0.09 -0.84 2.19 -90.62 -0.20 -1.04 16 8 H 0.08 0.78 6.43 -51.93 -0.33 0.45 16 9 C -0.15 -1.43 9.05 37.16 0.34 -1.09 16 10 C 0.10 1.18 1.56 -26.73 -0.04 1.14 16 11 O -0.35 -5.04 8.54 -39.26 -0.34 -5.38 16 12 C 0.46 7.72 7.93 36.01 0.29 8.01 16 13 O -0.51 -9.92 15.20 -18.75 -0.29 -10.21 16 14 C -0.11 -1.93 5.81 -27.88 -0.16 -2.09 16 15 C -0.09 -1.99 4.44 -26.73 -0.12 -2.11 16 16 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 17 C -0.60 -17.57 9.11 -34.44 -0.31 -17.88 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 20 N -0.92 -28.34 13.65 55.43 0.76 -27.58 16 21 Si 1.07 25.93 29.90 -169.99 -5.08 20.85 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.13 7.16 -51.93 -0.37 0.76 16 38 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 41 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 42 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 43 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 44 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -32.10 342.95 -8.50 -40.61 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.91 Total: -3.02 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -0.82 Total: -20.44 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.76 Total: -27.58 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.62 Total: -15.59 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.10 -8.50 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893308668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.014 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds