Wall clock time and date at job start Mon Mar 30 2020 01:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46687 * 2 1 4 4 C 1.52997 * 109.47259 * 239.99328 * 2 1 3 5 5 C 1.52998 * 109.47436 * 300.00623 * 4 2 1 6 6 C 1.53006 * 109.46777 * 299.99559 * 5 4 2 7 7 C 1.52997 * 109.46778 * 60.00038 * 6 5 4 8 8 H 1.08998 * 109.47303 * 60.00343 * 7 6 5 9 9 C 1.53008 * 109.47065 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47678 * 300.00050 * 7 6 5 11 11 O 1.45192 * 109.47461 * 180.02562 * 10 7 6 12 12 C 1.34231 * 117.00296 * 149.99721 * 11 10 7 13 13 O 1.20827 * 119.99690 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00001 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.46648 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46852 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47207 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99603 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99838 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99848 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99776 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99769 * 21 19 17 25 25 H 1.08998 * 109.47322 * 300.00219 * 1 2 3 26 26 H 1.09000 * 109.46527 * 60.00418 * 1 2 3 27 27 H 1.08999 * 109.47062 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47303 * 179.97438 * 4 2 1 29 29 H 1.09006 * 109.46726 * 60.00083 * 4 2 1 30 30 H 1.08998 * 109.47034 * 179.97438 * 5 4 2 31 31 H 1.08991 * 109.47539 * 59.99720 * 5 4 2 32 32 H 1.08998 * 109.46924 * 300.00149 * 6 5 4 33 33 H 1.08999 * 109.46717 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47403 * 180.02562 * 9 7 6 35 35 H 1.08999 * 109.46761 * 300.00181 * 9 7 6 36 36 H 1.08998 * 109.46593 * 60.00138 * 9 7 6 37 37 H 1.09005 * 109.46880 * 300.00076 * 10 7 6 38 38 H 1.08999 * 109.47182 * 60.00498 * 14 12 11 39 39 H 1.08998 * 109.47188 * 300.00040 * 14 12 11 40 40 H 1.08993 * 109.47525 * 60.00032 * 15 14 12 41 41 H 1.09006 * 109.47247 * 299.99482 * 15 14 12 42 42 H 1.09005 * 109.47493 * 59.99815 * 16 15 14 43 43 H 1.08998 * 109.47006 * 299.99778 * 16 15 14 44 44 H 0.97001 * 119.99667 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1638 -1.2491 6 6 2.0400 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2494 9 6 2.0395 -2.8852 2.4987 10 6 2.0399 -0.7212 1.2493 11 8 1.5564 -0.0368 2.4350 12 6 2.3300 0.9409 2.9325 13 8 3.3763 1.2161 2.3945 14 6 1.8928 1.6961 4.1612 15 6 2.9461 2.7480 4.5147 16 6 2.5027 3.5144 5.7625 17 6 3.5404 4.5501 6.1113 18 1 4.4276 4.6512 5.5039 19 6 3.3576 5.3677 7.2063 20 7 2.2773 5.2441 7.9462 21 14 4.6435 6.6519 7.6381 22 1 5.7555 6.5888 6.6558 23 1 5.1714 6.3853 9.0003 24 1 4.0264 8.0021 7.6018 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 -0.7210 -1.2494 29 1 1.6767 -0.2076 -2.1392 30 1 1.8930 -2.6775 -2.1393 31 1 0.4401 -2.1638 -1.2492 32 1 3.1300 -2.8850 0.0002 33 1 1.6770 -3.9128 0.0000 34 1 1.6758 -2.3716 3.3887 35 1 1.6757 -3.9127 2.4985 36 1 3.1294 -2.8855 2.4989 37 1 3.1300 -0.7212 1.2494 38 1 1.7790 1.0014 4.9933 39 1 0.9400 2.1880 3.9655 40 1 3.0596 3.4426 3.6826 41 1 3.8992 2.2564 4.7104 42 1 2.3895 2.8195 6.5947 43 1 1.5496 4.0059 5.5674 44 1 1.6094 4.5775 7.7217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893308668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:45 Heat of formation + Delta-G solvation = -157.634239 kcal Electronic energy + Delta-G solvation = -21060.415890 eV Core-core repulsion = 17974.991109 eV Total energy + Delta-G solvation = -3085.424781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96816 -39.96083 -37.29595 -36.48635 -34.24479 -34.19059 -32.00111 -29.79350 -27.70886 -27.38024 -25.82500 -23.87445 -22.66776 -22.22657 -21.34867 -19.90050 -19.13931 -18.54989 -17.52131 -17.41449 -16.20972 -16.04231 -15.68177 -15.43072 -15.39297 -15.19403 -14.62843 -14.47421 -14.03770 -13.63567 -13.52960 -13.37853 -13.23221 -12.95608 -12.77246 -12.76724 -12.59786 -12.56464 -12.10333 -11.99274 -11.89389 -11.87488 -11.83206 -11.74207 -11.68107 -11.22158 -11.14078 -10.81417 -10.69424 -10.55123 -8.70575 -6.40536 1.12851 1.51403 1.60879 1.62310 1.78486 2.55139 3.14171 3.48599 3.56063 3.61347 3.79891 3.96308 4.02556 4.04847 4.11574 4.21873 4.27860 4.39553 4.43512 4.54767 4.59477 4.65132 4.70959 4.74471 4.82853 4.86617 4.89504 4.91218 4.95371 5.04307 5.13044 5.18558 5.20289 5.28513 5.30159 5.35183 5.36690 5.43791 5.45597 5.58917 5.99452 6.17622 6.58260 6.71564 7.39670 8.71400 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.038813 B = 0.003227 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.237738 B = 8675.330443 C = 8833.333897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.046 0.954 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.109 4.109 7 C -0.083 4.083 8 H 0.092 0.908 9 C -0.150 4.150 10 C 0.091 3.909 11 O -0.346 6.346 12 C 0.467 3.533 13 O -0.541 6.541 14 C -0.106 4.106 15 C -0.079 4.079 16 C 0.009 3.991 17 C -0.624 4.624 18 H 0.043 0.957 19 C -0.037 4.037 20 N -0.936 5.936 21 Si 1.121 2.879 22 H -0.275 1.275 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.001 0.999 43 H 0.001 0.999 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -18.702 -18.596 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.065 0.935 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.147 4.147 7 C -0.102 4.102 8 H 0.111 0.889 9 C -0.207 4.207 10 C 0.036 3.964 11 O -0.263 6.263 12 C 0.312 3.688 13 O -0.431 6.431 14 C -0.143 4.143 15 C -0.117 4.117 16 C -0.028 4.028 17 C -0.662 4.662 18 H 0.062 0.938 19 C -0.234 4.234 20 N -0.573 5.573 21 Si 0.943 3.057 22 H -0.200 1.200 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.137 -17.477 -17.724 25.233 hybrid contribution -0.118 -0.827 -0.882 1.215 sum -4.255 -18.305 -18.606 26.445 Atomic orbital electron populations 1.21861 0.93165 1.03171 1.01808 1.21505 0.98120 0.98599 0.94611 0.93544 1.21536 1.00373 0.96745 0.96095 1.21626 1.01836 0.94114 0.98146 1.21607 1.00856 0.99800 0.92403 1.21294 1.02089 0.90031 0.96744 0.88934 1.21839 1.00664 1.01181 0.97064 1.23029 0.98602 0.92790 0.81970 1.86543 1.49775 1.46203 1.43757 1.24095 0.81590 0.77929 0.85222 1.90620 1.25624 1.65732 1.61119 1.21496 1.01816 0.97828 0.93209 1.21133 0.97000 0.95800 0.97747 1.19184 0.95813 0.94557 0.93215 1.22533 1.07629 1.21077 1.14938 0.93831 1.27398 1.01324 1.01544 0.93163 1.70857 1.10086 1.35770 1.40616 0.82878 0.72831 0.73613 0.76416 1.20017 1.20093 1.20095 0.93596 0.91627 0.90298 0.92598 0.90296 0.90066 0.90374 0.92227 0.89018 0.93300 0.90215 0.93579 0.92119 0.86363 0.86434 0.93558 0.93517 0.98077 0.98099 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.36 71.98 0.60 -1.96 16 2 C -0.11 -2.35 2.92 -10.79 -0.03 -2.38 16 3 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.11 -1.76 5.45 30.59 0.17 -1.59 16 5 C -0.12 -1.38 5.65 30.60 0.17 -1.21 16 6 C -0.11 -1.39 5.20 30.60 0.16 -1.23 16 7 C -0.08 -1.43 2.19 -10.79 -0.02 -1.46 16 8 H 0.09 1.46 6.43 -2.39 -0.02 1.45 16 9 C -0.15 -2.66 9.05 71.98 0.65 -2.01 16 10 C 0.09 2.17 1.56 30.59 0.05 2.22 16 11 O -0.35 -9.82 8.54 -51.43 -0.44 -10.25 16 12 C 0.47 15.84 7.93 71.24 0.56 16.41 16 13 O -0.54 -21.76 15.20 21.96 0.33 -21.42 16 14 C -0.11 -3.59 5.81 29.85 0.17 -3.42 16 15 C -0.08 -3.48 4.44 30.60 0.14 -3.34 16 16 C 0.01 0.49 4.28 29.85 0.13 0.62 16 17 C -0.62 -37.03 9.11 25.60 0.23 -36.80 16 18 H 0.04 2.58 7.74 -2.91 -0.02 2.56 16 19 C -0.04 -2.17 5.46 84.65 0.46 -1.71 16 20 N -0.94 -58.36 13.65 21.45 0.29 -58.07 16 21 Si 1.12 51.76 29.90 68.60 2.05 53.81 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 25 H 0.04 0.96 7.68 -2.39 -0.02 0.94 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.13 4.81 -2.39 -0.01 1.12 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.78 6.43 -2.39 -0.02 0.77 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 1.00 7.68 -2.39 -0.02 0.99 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.72 7.16 -2.38 -0.02 1.71 16 38 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 41 H 0.05 2.14 8.10 -2.38 -0.02 2.12 16 42 H 0.00 0.05 8.01 -2.38 -0.02 0.03 16 43 H 0.00 0.04 8.01 -2.39 -0.02 0.02 16 44 H 0.26 16.13 7.22 -92.71 -0.67 15.46 16 Total: -1.00 -69.81 342.95 6.72 -63.09 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 1.04 Total: 10.70 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 3.44 Total: -37.86 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.29 Total: -58.07 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.11 Total: -31.68 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -69.81 6.72 -63.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893308668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.547 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds