Wall clock time and date at job start Mon Mar 30 2020 01:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 115.56240 * 2 1 4 4 C 1.53079 * 117.51148 * 214.30054 * 2 1 3 5 5 C 1.53004 * 117.49124 * 145.03373 * 4 2 1 6 6 C 1.52997 * 117.53075 * 359.97438 * 4 2 1 7 7 C 1.52996 * 117.50161 * 145.69153 * 2 1 3 8 8 C 1.53004 * 117.50012 * 214.99964 * 7 2 1 9 9 N 1.46501 * 117.49920 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99989 * 272.45756 * 9 7 2 11 11 O 1.21594 * 119.99907 * 5.03131 * 10 9 7 12 12 N 1.34775 * 120.00163 * 185.02917 * 10 9 7 13 13 C 1.46502 * 119.99772 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47114 * 180.02562 * 13 12 10 15 15 C 1.50692 * 109.47285 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99885 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00221 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99922 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47435 * 89.99721 * 19 17 15 21 21 H 1.48496 * 109.46984 * 209.99625 * 19 17 15 22 22 H 1.48507 * 109.46999 * 329.99606 * 19 17 15 23 23 H 1.09004 * 109.47058 * 325.69892 * 1 2 3 24 24 H 1.08988 * 109.47491 * 85.69982 * 1 2 3 25 25 H 1.09005 * 109.46889 * 205.70793 * 1 2 3 26 26 H 1.09002 * 109.46948 * 200.23608 * 3 2 1 27 27 H 1.08997 * 109.46753 * 320.23582 * 3 2 1 28 28 H 1.09001 * 109.46912 * 80.23817 * 3 2 1 29 29 H 1.09000 * 109.46641 * 179.97438 * 5 4 2 30 30 H 1.08993 * 109.47088 * 299.99150 * 5 4 2 31 31 H 1.09003 * 109.47274 * 59.99716 * 5 4 2 32 32 H 1.09001 * 109.47221 * 295.73563 * 6 4 2 33 33 H 1.08999 * 109.47041 * 55.74026 * 6 4 2 34 34 H 1.09007 * 109.46865 * 175.73875 * 6 4 2 35 35 H 1.09003 * 109.46813 * 208.97631 * 8 7 2 36 36 H 1.08998 * 109.47278 * 328.97898 * 8 7 2 37 37 H 1.08999 * 109.47085 * 88.98358 * 8 7 2 38 38 H 0.96995 * 120.00124 * 92.73015 * 9 7 2 39 39 H 0.96996 * 119.99756 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47583 * 299.99949 * 13 12 10 41 41 H 1.08997 * 109.47567 * 60.00424 * 13 12 10 42 42 H 1.09004 * 109.46518 * 300.00190 * 14 13 12 43 43 H 1.08997 * 109.46894 * 59.99600 * 14 13 12 44 44 H 0.96999 * 119.99807 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2371 -1.1216 -0.7651 5 6 3.5498 -0.7763 -1.4711 6 6 1.3604 -2.1578 -1.4712 7 6 2.2364 -1.1210 0.7649 8 6 3.5488 -0.7758 1.4718 9 7 1.3962 -2.1119 1.4418 10 6 0.9691 -1.8865 2.7001 11 8 1.2037 -0.8228 3.2404 12 7 0.2820 -2.8402 3.3595 13 6 -0.1827 -2.5949 4.7271 14 6 -0.9290 -3.8278 5.2410 15 6 -1.4075 -3.5753 6.6475 16 1 -1.1997 -2.6302 7.1271 17 6 -2.1096 -4.5512 7.3224 18 7 -2.3622 -5.7023 6.7386 19 14 -2.7022 -4.2385 9.0661 20 1 -4.0598 -3.6381 9.0275 21 1 -2.7498 -5.5226 9.8105 22 1 -1.7678 -3.3062 9.7467 23 1 -0.3633 0.8490 0.5792 24 1 -0.3634 0.0770 -1.0246 25 1 -0.3633 -0.9260 0.4458 26 1 3.2168 1.2920 -0.3555 27 1 1.6343 2.0489 -0.6573 28 1 2.1897 1.7832 1.0128 29 1 3.9380 -1.6639 -1.9706 30 1 3.3710 0.0067 -2.2080 31 1 4.2758 -0.4259 -0.7374 32 1 0.7869 -2.7142 -0.7299 33 1 0.6778 -1.6516 -2.1538 34 1 1.9922 -2.8458 -2.0331 35 1 4.1803 -1.6630 1.5189 36 1 4.0646 0.0084 0.9176 37 1 3.3363 -0.4270 2.4823 38 1 1.1504 -2.9320 0.9859 39 1 0.0951 -3.6889 2.9286 40 1 0.6734 -2.3942 5.3713 41 1 -0.8525 -1.7351 4.7346 42 1 -1.7850 -4.0289 4.5969 43 1 -0.2588 -4.6874 5.2336 44 1 -2.8558 -6.3890 7.2136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894130006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:27 Heat of formation + Delta-G solvation = -43.187827 kcal Electronic energy + Delta-G solvation = -21218.441237 eV Core-core repulsion = 18170.271976 eV Total energy + Delta-G solvation = -3048.169261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73625 -39.95792 -36.53732 -34.89450 -34.42031 -32.06975 -31.59714 -31.02014 -28.78702 -27.13501 -26.75085 -26.30882 -23.13805 -22.17481 -19.95778 -19.58559 -18.59078 -18.36669 -17.11246 -16.65571 -16.48521 -16.08887 -15.66737 -15.41123 -15.24941 -14.71690 -14.51589 -14.30050 -13.87628 -13.57162 -13.38909 -13.28732 -13.21375 -12.99530 -12.94468 -12.88363 -12.80543 -12.65287 -12.52080 -12.29619 -12.15654 -11.64833 -11.63902 -11.48964 -11.17008 -10.90132 -10.60605 -10.27229 -10.07249 -9.50743 -8.24443 -6.34813 1.41424 1.42187 1.53528 1.70264 2.19099 2.40880 2.67034 3.10291 3.28860 3.59253 3.67258 3.86389 4.16910 4.21734 4.42757 4.51148 4.53304 4.57485 4.70415 4.74792 4.80501 4.83465 4.85962 4.91194 4.99475 5.04656 5.07807 5.09013 5.13539 5.17920 5.25143 5.31632 5.40526 5.42590 5.53293 5.57128 5.58673 5.72881 5.79391 6.05273 6.17097 6.78226 7.15708 7.34576 7.66987 8.87531 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037988 B = 0.003436 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.890719 B = 8148.064351 C = 8318.272478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.131 4.131 3 C -0.113 4.113 4 C -0.090 4.090 5 C -0.121 4.121 6 C -0.121 4.121 7 C 0.110 3.890 8 C -0.122 4.122 9 N -0.703 5.703 10 C 0.701 3.299 11 O -0.626 6.626 12 N -0.737 5.737 13 C 0.164 3.836 14 C 0.025 3.975 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.266 1.266 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.042 0.958 38 H 0.406 0.594 39 H 0.404 0.596 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.712 8.021 -20.323 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.170 4.170 4 C -0.091 4.091 5 C -0.178 4.178 6 C -0.178 4.178 7 C 0.022 3.978 8 C -0.180 4.180 9 N -0.359 5.359 10 C 0.402 3.598 11 O -0.507 6.507 12 N -0.392 5.392 13 C 0.039 3.961 14 C -0.013 4.013 15 C -0.585 4.585 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.191 1.191 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.244 0.756 39 H 0.239 0.761 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.847 8.791 -19.772 24.205 hybrid contribution -0.896 -0.896 0.953 1.585 sum 9.951 7.896 -18.819 22.705 Atomic orbital electron populations 1.21152 0.92789 1.00986 1.01538 1.22232 0.94899 0.92359 1.03745 1.21347 1.01001 0.93411 1.01235 1.22256 0.98908 0.98425 0.89501 1.21538 0.93299 1.02694 1.00224 1.21391 0.99180 0.97298 0.99898 1.20900 0.92271 0.93643 0.90940 1.21508 0.94138 1.02013 1.00314 1.44374 1.55118 1.23464 1.12913 1.16111 0.78539 0.83545 0.81631 1.90844 1.63930 1.26638 1.69277 1.45250 1.59442 1.18019 1.16463 1.21023 0.96598 0.98513 0.79920 1.19117 0.94476 0.92285 0.95377 1.21459 1.35786 1.01206 1.00079 0.92368 1.25871 0.95870 0.94677 1.02720 1.70058 1.41017 1.06170 1.39347 0.85440 0.78858 0.77770 0.78953 1.19728 1.20430 1.19079 0.94028 0.90745 0.93782 0.90313 0.91307 0.93949 0.90727 0.90607 0.91402 0.92991 0.91134 0.90229 0.91958 0.89060 0.93906 0.75592 0.76083 0.94044 0.94075 0.97388 0.97368 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.53 8.80 71.98 0.63 -1.90 16 2 C -0.13 -2.83 2.70 -52.16 -0.14 -2.97 16 3 C -0.11 -2.16 8.50 71.98 0.61 -1.54 16 4 C -0.09 -1.50 2.70 -52.15 -0.14 -1.64 16 5 C -0.12 -1.43 8.21 71.98 0.59 -0.84 16 6 C -0.12 -1.68 8.87 71.98 0.64 -1.04 16 7 C 0.11 2.60 2.37 3.60 0.01 2.61 16 8 C -0.12 -2.93 8.43 71.98 0.61 -2.32 16 9 N -0.70 -18.68 3.83 -438.00 -1.68 -20.36 16 10 C 0.70 25.37 8.18 179.06 1.47 26.84 16 11 O -0.63 -27.66 14.89 -4.01 -0.06 -27.72 16 12 N -0.74 -27.11 5.56 -478.51 -2.66 -29.77 16 13 C 0.16 7.38 5.61 86.38 0.48 7.86 16 14 C 0.02 1.29 5.09 29.85 0.15 1.44 16 15 C -0.55 -31.13 9.11 25.60 0.23 -30.89 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.01 0.42 5.46 84.66 0.46 0.88 16 18 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 19 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H 0.04 1.10 8.09 -2.38 -0.02 1.08 16 24 H 0.07 1.40 7.86 -2.39 -0.02 1.38 16 25 H 0.04 1.16 6.69 -2.38 -0.02 1.14 16 26 H 0.08 1.17 5.28 -2.39 -0.01 1.16 16 27 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.71 7.88 -2.39 -0.02 0.69 16 30 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.07 0.81 5.03 -2.39 -0.01 0.80 16 32 H 0.05 0.79 5.80 -2.39 -0.01 0.78 16 33 H 0.07 0.91 7.81 -2.39 -0.02 0.90 16 34 H 0.08 0.85 7.86 -2.38 -0.02 0.83 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.70 4.78 -2.39 -0.01 1.69 16 37 H 0.04 1.35 6.67 -2.39 -0.02 1.34 16 38 H 0.41 8.62 6.85 -92.71 -0.64 7.98 16 39 H 0.40 12.73 8.49 -92.71 -0.79 11.94 16 40 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -69.15 342.67 3.09 -66.06 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.43 Total: 23.66 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.61 Total: -3.50 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -4.05 Total: -104.64 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.06 Total: -27.72 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.15 3.09 -66.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.870 kcal (2) G-P(sol) polarization free energy of solvation -69.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds