Wall clock time and date at job start Mon Mar 30 2020 01:30:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53006 * 115.56240 * 2 1
4 4 C 1.53079 * 117.51148 * 214.30054 * 2 1 3
5 5 C 1.53004 * 117.49124 * 145.03373 * 4 2 1
6 6 C 1.52997 * 117.53075 * 359.97438 * 4 2 1
7 7 C 1.52996 * 117.50161 * 145.69153 * 2 1 3
8 8 C 1.53004 * 117.50012 * 214.99964 * 7 2 1
9 9 N 1.46501 * 117.49920 * 359.97438 * 7 2 1
10 10 C 1.34774 * 119.99989 * 272.45756 * 9 7 2
11 11 O 1.21594 * 119.99907 * 5.03131 * 10 9 7
12 12 N 1.34775 * 120.00163 * 185.02917 * 10 9 7
13 13 C 1.46502 * 119.99772 * 180.02562 * 12 10 9
14 14 C 1.53007 * 109.47114 * 180.02562 * 13 12 10
15 15 C 1.50692 * 109.47285 * 180.02562 * 14 13 12
16 16 H 1.08000 * 120.00332 * 359.97438 * 15 14 13
17 17 C 1.37878 * 119.99885 * 180.02562 * 15 14 13
18 18 N 1.31513 * 120.00221 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 119.99922 * 179.97438 * 17 15 14
20 20 H 1.48503 * 109.47435 * 89.99721 * 19 17 15
21 21 H 1.48496 * 109.46984 * 209.99625 * 19 17 15
22 22 H 1.48507 * 109.46999 * 329.99606 * 19 17 15
23 23 H 1.09004 * 109.47058 * 325.69892 * 1 2 3
24 24 H 1.08988 * 109.47491 * 85.69982 * 1 2 3
25 25 H 1.09005 * 109.46889 * 205.70793 * 1 2 3
26 26 H 1.09002 * 109.46948 * 200.23608 * 3 2 1
27 27 H 1.08997 * 109.46753 * 320.23582 * 3 2 1
28 28 H 1.09001 * 109.46912 * 80.23817 * 3 2 1
29 29 H 1.09000 * 109.46641 * 179.97438 * 5 4 2
30 30 H 1.08993 * 109.47088 * 299.99150 * 5 4 2
31 31 H 1.09003 * 109.47274 * 59.99716 * 5 4 2
32 32 H 1.09001 * 109.47221 * 295.73563 * 6 4 2
33 33 H 1.08999 * 109.47041 * 55.74026 * 6 4 2
34 34 H 1.09007 * 109.46865 * 175.73875 * 6 4 2
35 35 H 1.09003 * 109.46813 * 208.97631 * 8 7 2
36 36 H 1.08998 * 109.47278 * 328.97898 * 8 7 2
37 37 H 1.08999 * 109.47085 * 88.98358 * 8 7 2
38 38 H 0.96995 * 120.00124 * 92.73015 * 9 7 2
39 39 H 0.96996 * 119.99756 * 0.02562 * 12 10 9
40 40 H 1.09004 * 109.47583 * 299.99949 * 13 12 10
41 41 H 1.08997 * 109.47567 * 60.00424 * 13 12 10
42 42 H 1.09004 * 109.46518 * 300.00190 * 14 13 12
43 43 H 1.08997 * 109.46894 * 59.99600 * 14 13 12
44 44 H 0.96999 * 119.99807 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.1902 1.3803 0.0000
4 6 2.2371 -1.1216 -0.7651
5 6 3.5498 -0.7763 -1.4711
6 6 1.3604 -2.1578 -1.4712
7 6 2.2364 -1.1210 0.7649
8 6 3.5488 -0.7758 1.4718
9 7 1.3962 -2.1119 1.4418
10 6 0.9691 -1.8865 2.7001
11 8 1.2037 -0.8228 3.2404
12 7 0.2820 -2.8402 3.3595
13 6 -0.1827 -2.5949 4.7271
14 6 -0.9290 -3.8278 5.2410
15 6 -1.4075 -3.5753 6.6475
16 1 -1.1997 -2.6302 7.1271
17 6 -2.1096 -4.5512 7.3224
18 7 -2.3622 -5.7023 6.7386
19 14 -2.7022 -4.2385 9.0661
20 1 -4.0598 -3.6381 9.0275
21 1 -2.7498 -5.5226 9.8105
22 1 -1.7678 -3.3062 9.7467
23 1 -0.3633 0.8490 0.5792
24 1 -0.3634 0.0770 -1.0246
25 1 -0.3633 -0.9260 0.4458
26 1 3.2168 1.2920 -0.3555
27 1 1.6343 2.0489 -0.6573
28 1 2.1897 1.7832 1.0128
29 1 3.9380 -1.6639 -1.9706
30 1 3.3710 0.0067 -2.2080
31 1 4.2758 -0.4259 -0.7374
32 1 0.7869 -2.7142 -0.7299
33 1 0.6778 -1.6516 -2.1538
34 1 1.9922 -2.8458 -2.0331
35 1 4.1803 -1.6630 1.5189
36 1 4.0646 0.0084 0.9176
37 1 3.3363 -0.4270 2.4823
38 1 1.1504 -2.9320 0.9859
39 1 0.0951 -3.6889 2.9286
40 1 0.6734 -2.3942 5.3713
41 1 -0.8525 -1.7351 4.7346
42 1 -1.7850 -4.0289 4.5969
43 1 -0.2588 -4.6874 5.2336
44 1 -2.8558 -6.3890 7.2136
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000894130006.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:30:27
Heat of formation + Delta-G solvation = -43.187827 kcal
Electronic energy + Delta-G solvation = -21218.441237 eV
Core-core repulsion = 18170.271976 eV
Total energy + Delta-G solvation = -3048.169261 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.73625 -39.95792 -36.53732 -34.89450 -34.42031 -32.06975 -31.59714 -31.02014
-28.78702 -27.13501 -26.75085 -26.30882 -23.13805 -22.17481 -19.95778 -19.58559
-18.59078 -18.36669 -17.11246 -16.65571 -16.48521 -16.08887 -15.66737 -15.41123
-15.24941 -14.71690 -14.51589 -14.30050 -13.87628 -13.57162 -13.38909 -13.28732
-13.21375 -12.99530 -12.94468 -12.88363 -12.80543 -12.65287 -12.52080 -12.29619
-12.15654 -11.64833 -11.63902 -11.48964 -11.17008 -10.90132 -10.60605 -10.27229
-10.07249 -9.50743 -8.24443 -6.34813 1.41424 1.42187 1.53528 1.70264
2.19099 2.40880 2.67034 3.10291 3.28860 3.59253 3.67258 3.86389
4.16910 4.21734 4.42757 4.51148 4.53304 4.57485 4.70415 4.74792
4.80501 4.83465 4.85962 4.91194 4.99475 5.04656 5.07807 5.09013
5.13539 5.17920 5.25143 5.31632 5.40526 5.42590 5.53293 5.57128
5.58673 5.72881 5.79391 6.05273 6.17097 6.78226 7.15708 7.34576
7.66987 8.87531
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.037988 B = 0.003436 C = 0.003365
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 736.890719 B = 8148.064351 C = 8318.272478
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.131 4.131
3 C -0.113 4.113
4 C -0.090 4.090
5 C -0.121 4.121
6 C -0.121 4.121
7 C 0.110 3.890
8 C -0.122 4.122
9 N -0.703 5.703
10 C 0.701 3.299
11 O -0.626 6.626
12 N -0.737 5.737
13 C 0.164 3.836
14 C 0.025 3.975
15 C -0.547 4.547
16 H 0.058 0.942
17 C 0.007 3.993
18 N -0.926 5.926
19 Si 0.965 3.035
20 H -0.272 1.272
21 H -0.279 1.279
22 H -0.266 1.266
23 H 0.041 0.959
24 H 0.074 0.926
25 H 0.043 0.957
26 H 0.078 0.922
27 H 0.068 0.932
28 H 0.041 0.959
29 H 0.074 0.926
30 H 0.075 0.925
31 H 0.067 0.933
32 H 0.051 0.949
33 H 0.070 0.930
34 H 0.079 0.921
35 H 0.061 0.939
36 H 0.091 0.909
37 H 0.042 0.958
38 H 0.406 0.594
39 H 0.404 0.596
40 H 0.041 0.959
41 H 0.041 0.959
42 H 0.008 0.992
43 H 0.008 0.992
44 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.712 8.021 -20.323 24.334
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.132 4.132
3 C -0.170 4.170
4 C -0.091 4.091
5 C -0.178 4.178
6 C -0.178 4.178
7 C 0.022 3.978
8 C -0.180 4.180
9 N -0.359 5.359
10 C 0.402 3.598
11 O -0.507 6.507
12 N -0.392 5.392
13 C 0.039 3.961
14 C -0.013 4.013
15 C -0.585 4.585
16 H 0.076 0.924
17 C -0.191 4.191
18 N -0.566 5.566
19 Si 0.790 3.210
20 H -0.197 1.197
21 H -0.204 1.204
22 H -0.191 1.191
23 H 0.060 0.940
24 H 0.093 0.907
25 H 0.062 0.938
26 H 0.097 0.903
27 H 0.087 0.913
28 H 0.061 0.939
29 H 0.093 0.907
30 H 0.094 0.906
31 H 0.086 0.914
32 H 0.070 0.930
33 H 0.089 0.911
34 H 0.098 0.902
35 H 0.080 0.920
36 H 0.109 0.891
37 H 0.061 0.939
38 H 0.244 0.756
39 H 0.239 0.761
40 H 0.060 0.940
41 H 0.059 0.941
42 H 0.026 0.974
43 H 0.026 0.974
44 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 10.847 8.791 -19.772 24.205
hybrid contribution -0.896 -0.896 0.953 1.585
sum 9.951 7.896 -18.819 22.705
Atomic orbital electron populations
1.21152 0.92789 1.00986 1.01538 1.22232 0.94899 0.92359 1.03745
1.21347 1.01001 0.93411 1.01235 1.22256 0.98908 0.98425 0.89501
1.21538 0.93299 1.02694 1.00224 1.21391 0.99180 0.97298 0.99898
1.20900 0.92271 0.93643 0.90940 1.21508 0.94138 1.02013 1.00314
1.44374 1.55118 1.23464 1.12913 1.16111 0.78539 0.83545 0.81631
1.90844 1.63930 1.26638 1.69277 1.45250 1.59442 1.18019 1.16463
1.21023 0.96598 0.98513 0.79920 1.19117 0.94476 0.92285 0.95377
1.21459 1.35786 1.01206 1.00079 0.92368 1.25871 0.95870 0.94677
1.02720 1.70058 1.41017 1.06170 1.39347 0.85440 0.78858 0.77770
0.78953 1.19728 1.20430 1.19079 0.94028 0.90745 0.93782 0.90313
0.91307 0.93949 0.90727 0.90607 0.91402 0.92991 0.91134 0.90229
0.91958 0.89060 0.93906 0.75592 0.76083 0.94044 0.94075 0.97388
0.97368 0.92527
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.53 8.80 71.98 0.63 -1.90 16
2 C -0.13 -2.83 2.70 -52.16 -0.14 -2.97 16
3 C -0.11 -2.16 8.50 71.98 0.61 -1.54 16
4 C -0.09 -1.50 2.70 -52.15 -0.14 -1.64 16
5 C -0.12 -1.43 8.21 71.98 0.59 -0.84 16
6 C -0.12 -1.68 8.87 71.98 0.64 -1.04 16
7 C 0.11 2.60 2.37 3.60 0.01 2.61 16
8 C -0.12 -2.93 8.43 71.98 0.61 -2.32 16
9 N -0.70 -18.68 3.83 -438.00 -1.68 -20.36 16
10 C 0.70 25.37 8.18 179.06 1.47 26.84 16
11 O -0.63 -27.66 14.89 -4.01 -0.06 -27.72 16
12 N -0.74 -27.11 5.56 -478.51 -2.66 -29.77 16
13 C 0.16 7.38 5.61 86.38 0.48 7.86 16
14 C 0.02 1.29 5.09 29.85 0.15 1.44 16
15 C -0.55 -31.13 9.11 25.60 0.23 -30.89 16
16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16
17 C 0.01 0.42 5.46 84.66 0.46 0.88 16
18 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16
19 Si 0.97 44.11 29.54 68.60 2.03 46.14 16
20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
23 H 0.04 1.10 8.09 -2.38 -0.02 1.08 16
24 H 0.07 1.40 7.86 -2.39 -0.02 1.38 16
25 H 0.04 1.16 6.69 -2.38 -0.02 1.14 16
26 H 0.08 1.17 5.28 -2.39 -0.01 1.16 16
27 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16
28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16
29 H 0.07 0.71 7.88 -2.39 -0.02 0.69 16
30 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16
31 H 0.07 0.81 5.03 -2.39 -0.01 0.80 16
32 H 0.05 0.79 5.80 -2.39 -0.01 0.78 16
33 H 0.07 0.91 7.81 -2.39 -0.02 0.90 16
34 H 0.08 0.85 7.86 -2.38 -0.02 0.83 16
35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
36 H 0.09 1.70 4.78 -2.39 -0.01 1.69 16
37 H 0.04 1.35 6.67 -2.39 -0.02 1.34 16
38 H 0.41 8.62 6.85 -92.71 -0.64 7.98 16
39 H 0.40 12.73 8.49 -92.71 -0.79 11.94 16
40 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16
41 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16
42 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16
43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16
44 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16
Total: -1.00 -69.15 342.67 3.09 -66.06
By element:
Atomic # 1 Polarization: 24.08 SS G_CDS: -0.43 Total: 23.66 kcal
Atomic # 6 Polarization: -9.10 SS G_CDS: 5.61 Total: -3.50 kcal
Atomic # 7 Polarization: -100.58 SS G_CDS: -4.05 Total: -104.64 kcal
Atomic # 8 Polarization: -27.66 SS G_CDS: -0.06 Total: -27.72 kcal
Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal
Total: -69.15 3.09 -66.06 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000894130006.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.870 kcal
(2) G-P(sol) polarization free energy of solvation -69.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.279 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.188 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds