Wall clock time and date at job start Mon Mar 30 2020 00:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47253 * 2 1 4 4 C 1.52994 * 109.47157 * 239.99571 * 2 1 3 5 5 C 1.50693 * 109.47437 * 65.00248 * 4 2 1 6 6 H 1.07997 * 119.99868 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00545 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00431 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99510 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46972 * 90.00270 * 9 7 5 11 11 H 1.48493 * 109.47054 * 210.00140 * 9 7 5 12 12 H 1.48502 * 109.47265 * 330.00310 * 9 7 5 13 13 C 1.52998 * 109.46799 * 119.99325 * 2 1 3 14 14 N 1.46896 * 109.47449 * 295.00167 * 13 2 1 15 15 C 1.46903 * 111.00405 * 180.02562 * 14 13 2 16 16 H 1.09005 * 109.46683 * 324.99753 * 15 14 13 17 17 C 1.53000 * 109.47367 * 84.99396 * 15 14 13 18 18 C 1.50701 * 109.47244 * 204.99924 * 15 14 13 19 19 N 1.30328 * 126.35898 * 315.02351 * 18 15 14 20 20 N 1.28537 * 109.99452 * 179.70875 * 19 18 15 21 21 C 1.31039 * 109.85460 * 0.44850 * 20 19 18 22 22 O 1.35534 * 126.44423 * 179.82190 * 21 20 19 23 23 N 1.36306 * 107.10889 * 359.56109 * 21 20 19 24 24 C 1.46498 * 127.12244 * 180.27984 * 23 21 20 25 25 H 1.09007 * 109.47248 * 300.00802 * 1 2 3 26 26 H 1.09000 * 109.47112 * 60.00167 * 1 2 3 27 27 H 1.08996 * 109.47643 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47195 * 185.00598 * 4 2 1 29 29 H 1.09006 * 109.46738 * 304.99930 * 4 2 1 30 30 H 0.97007 * 120.00297 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47085 * 174.99748 * 13 2 1 32 32 H 1.09005 * 109.47101 * 54.99882 * 13 2 1 33 33 H 1.00903 * 111.00061 * 303.95254 * 14 13 2 34 34 H 1.09002 * 109.46823 * 180.02562 * 17 15 14 35 35 H 1.08996 * 109.47415 * 300.00542 * 17 15 14 36 36 H 1.09005 * 109.46928 * 60.00506 * 17 15 14 37 37 H 0.96700 * 114.00259 * 269.69113 * 22 21 20 38 38 H 1.09004 * 109.46663 * 89.97590 * 24 23 21 39 39 H 1.08999 * 109.47540 * 209.97787 * 24 23 21 40 40 H 1.09004 * 109.47035 * 329.98213 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0801 0.9739 -2.3758 7 6 1.9924 -0.4025 -3.7283 8 7 1.6442 0.2763 -4.7994 9 14 2.9628 -1.9893 -3.9026 10 1 2.0235 -3.1336 -4.0186 11 1 3.8109 -1.9196 -5.1195 12 1 3.8252 -2.1759 -2.7081 13 6 2.0399 -0.7211 1.2493 14 7 1.6513 0.0376 2.4456 15 6 2.1256 -0.6262 3.6673 16 1 2.0822 -1.7071 3.5336 17 6 3.5691 -0.2047 3.9492 18 6 1.2503 -0.2280 4.8276 19 7 0.8414 0.9771 5.1091 20 7 0.1063 0.9567 6.1633 21 6 0.0146 -0.2687 6.6184 22 8 -0.6744 -0.6713 7.7139 23 7 0.7376 -1.0632 5.7793 24 6 0.9257 -2.5127 5.8776 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7996 -1.2054 29 1 1.6053 -1.7199 -1.2949 30 1 1.8915 -0.0467 -5.6800 31 1 3.1263 -0.7994 1.2057 32 1 1.6052 -1.7197 1.2954 33 1 1.9881 0.9875 2.3966 34 1 3.9211 -0.6977 4.8554 35 1 4.2022 -0.4927 3.1099 36 1 3.6125 0.8762 4.0828 37 1 -0.1562 -0.6609 8.5303 38 1 0.1366 -3.0199 5.3223 39 1 1.8954 -2.7825 5.4594 40 1 0.8848 -2.8143 6.9243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895173890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:21 Heat of formation + Delta-G solvation = 33.340863 kcal Electronic energy + Delta-G solvation = -20462.933058 eV Core-core repulsion = 17314.541987 eV Total energy + Delta-G solvation = -3148.391071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.19502 -38.13266 -37.51764 -35.37527 -34.72437 -32.29454 -30.38277 -28.92376 -27.94129 -27.27527 -25.38513 -23.88812 -22.56922 -21.93825 -20.68384 -19.22360 -18.98625 -17.32940 -16.82711 -16.54937 -15.62202 -15.14004 -14.88904 -14.83876 -14.20287 -13.83140 -13.63353 -13.34779 -13.10548 -12.89652 -12.82525 -12.34961 -12.23687 -11.80893 -11.70110 -11.61279 -11.49102 -10.95713 -10.76459 -10.48461 -10.44771 -10.34640 -9.80146 -9.74045 -9.48105 -9.16205 -9.05189 -8.50921 -8.31912 -6.00583 -3.97561 1.38254 1.82127 2.62686 3.30956 3.38415 3.40724 3.47451 3.96800 4.13582 4.35173 4.46983 4.61084 4.64861 4.85875 4.94146 5.15280 5.27851 5.32499 5.43955 5.54943 5.56936 5.66382 5.71038 5.88281 6.01378 6.25747 6.26724 6.40694 6.59992 6.82923 6.99902 7.05150 7.12056 7.20193 7.30793 7.44716 7.52531 7.83659 8.54725 8.59151 9.05972 9.61953 11.12941 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.003496 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.352060 B = 8006.563408 C = 8212.051123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.063 0.937 4 C -0.008 4.008 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.063 3.937 14 N -0.672 5.672 15 C 0.172 3.828 16 H 0.093 0.907 17 C -0.177 4.177 18 C 0.212 3.788 19 N -0.262 5.262 20 N -0.283 5.283 21 C 0.335 3.665 22 O -0.436 6.436 23 N -0.487 5.487 24 C 0.074 3.926 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.013 0.987 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.354 0.646 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.402 0.598 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -7.750 24.969 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.081 0.919 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.065 4.065 14 N -0.305 5.305 15 C 0.059 3.941 16 H 0.111 0.889 17 C -0.237 4.237 18 C -0.056 4.056 19 N -0.103 5.103 20 N -0.134 5.134 21 C 0.031 3.969 22 O -0.235 6.235 23 N -0.190 5.190 24 C -0.069 4.069 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.174 0.826 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.258 0.742 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.513 -6.680 24.456 25.397 hybrid contribution 1.799 -2.252 0.346 2.903 sum 3.312 -8.932 24.801 26.568 Atomic orbital electron populations 1.21609 0.95216 1.00535 1.00938 1.21011 0.96423 0.99245 0.92574 0.91858 1.19605 0.95672 0.95836 0.93470 1.21139 1.35232 1.09632 0.89062 0.90753 1.25034 0.95701 0.96914 0.95967 1.69914 1.47183 1.39320 0.97999 0.86804 0.80608 0.84416 0.77556 1.20425 1.21526 1.19158 1.22262 0.97423 0.97553 0.89288 1.60295 1.63901 1.06465 0.99798 1.19721 0.89319 0.99183 0.85912 0.88911 1.22486 0.95469 1.03269 1.02461 1.24716 1.00121 0.86725 0.94021 1.74219 1.10000 1.17825 1.08293 1.74627 1.16316 1.14493 1.07933 1.22010 0.96635 0.86742 0.91505 1.84936 1.36128 1.87075 1.15363 1.46616 1.38925 1.10118 1.23372 1.22077 1.04262 0.76082 1.04507 0.93552 0.92155 0.94378 0.96912 0.97121 0.92834 0.95222 0.91531 0.82585 0.92305 0.90813 0.90962 0.74156 0.89648 0.88899 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.07 -1.41 2.48 -90.62 -0.22 -1.63 16 3 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.01 -0.18 3.52 -27.89 -0.10 -0.28 16 5 C -0.51 -14.39 8.96 -34.44 -0.31 -14.70 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 9 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.06 0.94 4.87 -3.83 -0.02 0.92 16 14 N -0.67 -9.09 5.68 -107.95 -0.61 -9.71 16 15 C 0.17 1.85 2.91 -68.86 -0.20 1.65 16 16 H 0.09 0.84 6.94 -51.93 -0.36 0.48 16 17 C -0.18 -1.59 9.14 37.16 0.34 -1.25 16 18 C 0.21 2.62 6.91 -154.11 -1.06 1.56 16 19 N -0.26 -4.04 12.18 32.97 0.40 -3.64 16 20 N -0.28 -4.33 12.22 29.65 0.36 -3.97 16 21 C 0.34 3.94 9.22 -88.76 -0.82 3.13 16 22 O -0.44 -3.67 13.62 -18.30 -0.25 -3.92 16 23 N -0.49 -4.92 3.20 -122.48 -0.39 -5.31 16 24 C 0.07 0.39 10.86 59.85 0.65 1.04 16 25 H 0.05 0.84 7.75 -51.93 -0.40 0.44 16 26 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 29 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 31 H 0.03 0.42 7.44 -51.93 -0.39 0.03 16 32 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 33 H 0.35 4.85 8.47 -39.29 -0.33 4.52 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.64 7.45 -51.93 -0.39 0.26 16 36 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.40 1.06 9.06 45.56 0.41 1.47 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.33 7.51 -51.93 -0.39 -0.06 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -35.41 331.17 -6.38 -41.79 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.48 Total: -0.03 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.51 Total: -9.90 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.53 Total: -49.81 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.25 Total: -3.92 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.41 -6.38 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895173890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.134 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds