Wall clock time and date at job start Mon Mar 30 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47253 * 2 1 4 4 C 1.52994 * 109.47157 * 239.99571 * 2 1 3 5 5 C 1.50693 * 109.47437 * 65.00248 * 4 2 1 6 6 H 1.07997 * 119.99868 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00545 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00431 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99510 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46972 * 90.00270 * 9 7 5 11 11 H 1.48493 * 109.47054 * 210.00140 * 9 7 5 12 12 H 1.48502 * 109.47265 * 330.00310 * 9 7 5 13 13 C 1.52998 * 109.46799 * 119.99325 * 2 1 3 14 14 N 1.46896 * 109.47449 * 295.00167 * 13 2 1 15 15 C 1.46903 * 111.00405 * 180.02562 * 14 13 2 16 16 H 1.09005 * 109.46683 * 324.99753 * 15 14 13 17 17 C 1.53000 * 109.47367 * 84.99396 * 15 14 13 18 18 C 1.50701 * 109.47244 * 204.99924 * 15 14 13 19 19 N 1.30328 * 126.35898 * 315.02351 * 18 15 14 20 20 N 1.28537 * 109.99452 * 179.70875 * 19 18 15 21 21 C 1.31039 * 109.85460 * 0.44850 * 20 19 18 22 22 O 1.35534 * 126.44423 * 179.82190 * 21 20 19 23 23 N 1.36306 * 107.10889 * 359.56109 * 21 20 19 24 24 C 1.46498 * 127.12244 * 180.27984 * 23 21 20 25 25 H 1.09007 * 109.47248 * 300.00802 * 1 2 3 26 26 H 1.09000 * 109.47112 * 60.00167 * 1 2 3 27 27 H 1.08996 * 109.47643 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47195 * 185.00598 * 4 2 1 29 29 H 1.09006 * 109.46738 * 304.99930 * 4 2 1 30 30 H 0.97007 * 120.00297 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47085 * 174.99748 * 13 2 1 32 32 H 1.09005 * 109.47101 * 54.99882 * 13 2 1 33 33 H 1.00903 * 111.00061 * 303.95254 * 14 13 2 34 34 H 1.09002 * 109.46823 * 180.02562 * 17 15 14 35 35 H 1.08996 * 109.47415 * 300.00542 * 17 15 14 36 36 H 1.09005 * 109.46928 * 60.00506 * 17 15 14 37 37 H 0.96700 * 114.00259 * 269.69113 * 22 21 20 38 38 H 1.09004 * 109.46663 * 89.97590 * 24 23 21 39 39 H 1.08999 * 109.47540 * 209.97787 * 24 23 21 40 40 H 1.09004 * 109.47035 * 329.98213 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0801 0.9739 -2.3758 7 6 1.9924 -0.4025 -3.7283 8 7 1.6442 0.2763 -4.7994 9 14 2.9628 -1.9893 -3.9026 10 1 2.0235 -3.1336 -4.0186 11 1 3.8109 -1.9196 -5.1195 12 1 3.8252 -2.1759 -2.7081 13 6 2.0399 -0.7211 1.2493 14 7 1.6513 0.0376 2.4456 15 6 2.1256 -0.6262 3.6673 16 1 2.0822 -1.7071 3.5336 17 6 3.5691 -0.2047 3.9492 18 6 1.2503 -0.2280 4.8276 19 7 0.8414 0.9771 5.1091 20 7 0.1063 0.9567 6.1633 21 6 0.0146 -0.2687 6.6184 22 8 -0.6744 -0.6713 7.7139 23 7 0.7376 -1.0632 5.7793 24 6 0.9257 -2.5127 5.8776 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7996 -1.2054 29 1 1.6053 -1.7199 -1.2949 30 1 1.8915 -0.0467 -5.6800 31 1 3.1263 -0.7994 1.2057 32 1 1.6052 -1.7197 1.2954 33 1 1.9881 0.9875 2.3966 34 1 3.9211 -0.6977 4.8554 35 1 4.2022 -0.4927 3.1099 36 1 3.6125 0.8762 4.0828 37 1 -0.1562 -0.6609 8.5303 38 1 0.1366 -3.0199 5.3223 39 1 1.8954 -2.7825 5.4594 40 1 0.8848 -2.8143 6.9243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895173890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:20 Heat of formation + Delta-G solvation = 4.155697 kcal Electronic energy + Delta-G solvation = -20464.198622 eV Core-core repulsion = 17314.541987 eV Total energy + Delta-G solvation = -3149.656635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.05165 -38.98833 -38.50107 -36.52216 -35.77029 -34.27611 -31.59398 -29.90296 -29.01866 -28.47757 -26.68336 -24.95860 -23.83374 -23.12946 -21.56600 -20.67381 -19.75940 -18.91805 -18.06586 -17.37727 -16.58928 -16.42601 -16.11531 -15.69771 -15.62920 -15.00208 -14.80232 -14.38760 -14.22287 -13.83366 -13.70430 -13.57046 -13.37054 -13.08005 -12.97391 -12.77716 -12.65649 -12.45614 -12.28319 -12.18335 -11.68100 -11.45590 -11.20952 -11.19295 -11.12862 -11.03106 -10.70536 -10.11608 -9.33060 -8.22402 -6.25259 0.60140 1.09688 1.39309 1.41499 1.53112 1.71929 2.41370 2.79003 3.13019 3.14311 3.38814 3.73512 3.91119 4.07910 4.17135 4.31282 4.35989 4.39072 4.50499 4.61648 4.63773 4.76892 4.83961 4.91440 4.96555 4.98361 4.99852 5.12419 5.22633 5.42828 5.43598 5.58607 5.61614 5.72913 5.76946 6.07993 6.37689 6.42781 6.46923 6.83438 7.38216 7.64978 8.94794 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.003496 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.352060 B = 8006.563408 C = 8212.051123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 H 0.048 0.952 4 C -0.004 4.004 5 C -0.520 4.520 6 H 0.029 0.971 7 C -0.003 4.003 8 N -0.958 5.958 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.239 1.239 13 C 0.079 3.921 14 N -0.686 5.686 15 C 0.176 3.824 16 H 0.118 0.882 17 C -0.170 4.170 18 C 0.209 3.791 19 N -0.306 5.306 20 N -0.336 5.336 21 C 0.346 3.654 22 O -0.436 6.436 23 N -0.480 5.480 24 C 0.062 3.938 25 H 0.055 0.945 26 H 0.023 0.977 27 H 0.045 0.955 28 H 0.023 0.977 29 H 0.020 0.980 30 H 0.264 0.736 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.350 0.650 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.428 0.572 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 -11.105 27.166 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.042 4.042 5 C -0.558 4.558 6 H 0.047 0.953 7 C -0.199 4.199 8 N -0.600 5.600 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.162 1.162 13 C -0.049 4.049 14 N -0.318 5.318 15 C 0.063 3.937 16 H 0.136 0.864 17 C -0.229 4.229 18 C -0.060 4.060 19 N -0.147 5.147 20 N -0.186 5.186 21 C 0.040 3.960 22 O -0.239 6.239 23 N -0.183 5.183 24 C -0.079 4.079 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.289 0.711 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.081 -10.054 26.715 28.710 hybrid contribution 1.206 -1.156 -0.254 1.689 sum 4.287 -11.210 26.461 29.056 Atomic orbital electron populations 1.21494 0.95752 1.00550 0.99552 1.20890 0.95903 0.98696 0.93527 0.93359 1.19547 0.96211 0.95675 0.92774 1.21502 1.34182 1.08626 0.91523 0.95264 1.26082 0.97133 1.01242 0.95434 1.70095 1.49265 1.41856 0.98750 0.85627 0.79253 0.79118 0.78421 1.19396 1.21545 1.16215 1.21975 0.98188 0.97218 0.87559 1.60174 1.64708 1.06425 1.00494 1.19865 0.89718 1.00162 0.83982 0.86397 1.22410 0.94324 1.02498 1.03700 1.24963 0.99993 0.86474 0.94545 1.74098 1.11407 1.19996 1.09176 1.74484 1.18185 1.16980 1.09000 1.22028 0.95561 0.86404 0.92014 1.84897 1.36577 1.86647 1.15793 1.46793 1.37724 1.11612 1.22152 1.22512 1.05624 0.73079 1.06637 0.92569 0.95808 0.93557 0.95897 0.96184 0.92776 0.93606 0.90255 0.83054 0.90325 0.90078 0.92480 0.71114 0.89379 0.86610 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 8.89 71.98 0.64 -3.87 16 2 C -0.07 -2.66 2.48 -10.80 -0.03 -2.69 16 3 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.00 -0.19 3.52 29.84 0.10 -0.08 16 5 C -0.52 -29.86 8.96 25.60 0.23 -29.63 16 6 H 0.03 1.88 7.30 -2.91 -0.02 1.86 16 7 C 0.00 -0.20 5.47 84.66 0.46 0.27 16 8 N -0.96 -61.03 13.96 21.45 0.30 -60.73 16 9 Si 0.95 43.66 27.47 68.60 1.88 45.54 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 13 C 0.08 2.12 4.87 86.30 0.42 2.54 16 14 N -0.69 -17.22 5.68 -495.43 -2.82 -20.03 16 15 C 0.18 3.25 2.91 44.17 0.13 3.38 16 16 H 0.12 1.59 6.94 -2.38 -0.02 1.58 16 17 C -0.17 -2.55 9.14 71.98 0.66 -1.89 16 18 C 0.21 4.81 6.91 137.67 0.95 5.76 16 19 N -0.31 -9.40 12.18 -49.60 -0.60 -10.01 16 20 N -0.34 -10.26 12.22 -173.67 -2.12 -12.38 16 21 C 0.35 7.61 9.22 179.70 1.66 9.27 16 22 O -0.44 -6.38 13.62 -88.38 -1.20 -7.58 16 23 N -0.48 -8.47 3.20 -652.23 -2.09 -10.56 16 24 C 0.06 0.41 10.86 127.77 1.39 1.80 16 25 H 0.06 2.04 7.75 -2.38 -0.02 2.02 16 26 H 0.02 1.05 6.95 -2.39 -0.02 1.04 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.02 0.98 7.20 -2.38 -0.02 0.97 16 29 H 0.02 0.86 7.57 -2.38 -0.02 0.85 16 30 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 31 H 0.05 1.10 7.44 -2.38 -0.02 1.08 16 32 H 0.08 1.97 8.06 -2.38 -0.02 1.95 16 33 H 0.35 9.31 8.47 -89.69 -0.76 8.55 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.12 7.45 -2.39 -0.02 1.10 16 36 H 0.06 1.05 8.13 -2.38 -0.02 1.03 16 37 H 0.43 1.11 9.06 -74.06 -0.67 0.44 16 38 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.12 0.25 7.51 -2.39 -0.02 0.24 16 40 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -80.46 331.17 -0.47 -80.93 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -0.43 Total: 9.97 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 6.61 Total: -15.15 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -7.33 Total: -113.72 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -1.20 Total: -7.58 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -80.46 -0.47 -80.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895173890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.086 kcal (2) G-P(sol) polarization free energy of solvation -80.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds