Wall clock time and date at job start Mon Mar 30 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47279 * 2 1 4 4 N 1.46905 * 109.46823 * 119.99956 * 2 1 3 5 5 C 1.46897 * 110.99864 * 274.99519 * 4 2 1 6 6 C 1.53005 * 109.46930 * 179.97438 * 5 4 2 7 7 H 1.08993 * 109.47083 * 305.00659 * 6 5 4 8 8 C 1.52999 * 109.46644 * 65.00675 * 6 5 4 9 9 C 1.53003 * 109.47095 * 185.00138 * 6 5 4 10 10 C 1.50698 * 109.46977 * 175.00324 * 9 6 5 11 11 H 1.07999 * 120.00302 * 0.02562 * 10 9 6 12 12 C 1.37873 * 120.00083 * 179.97438 * 10 9 6 13 13 N 1.31523 * 119.99906 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00401 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46995 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46880 * 120.00167 * 14 12 10 17 17 H 1.48498 * 109.47789 * 240.00483 * 14 12 10 18 18 C 1.50702 * 109.47037 * 239.99947 * 2 1 3 19 19 N 1.30338 * 126.35859 * 285.02338 * 18 2 1 20 20 N 1.28534 * 109.99189 * 179.97438 * 19 18 2 21 21 C 1.31035 * 109.86158 * 0.02562 * 20 19 18 22 22 O 1.35532 * 126.44703 * 179.97438 * 21 20 19 23 23 N 1.36308 * 107.10267 * 359.97438 * 21 20 19 24 24 C 1.46506 * 127.11981 * 179.97438 * 23 21 20 25 25 H 1.08999 * 109.47046 * 300.00321 * 1 2 3 26 26 H 1.08994 * 109.46790 * 59.99908 * 1 2 3 27 27 H 1.08999 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.00899 * 110.99360 * 151.04488 * 4 2 1 29 29 H 1.08995 * 109.47445 * 300.00160 * 5 4 2 30 30 H 1.08997 * 109.46842 * 60.00542 * 5 4 2 31 31 H 1.09007 * 109.47195 * 179.97438 * 8 6 5 32 32 H 1.09010 * 109.47240 * 299.99457 * 8 6 5 33 33 H 1.08995 * 109.47678 * 59.99717 * 8 6 5 34 34 H 1.09001 * 109.46817 * 295.00759 * 9 6 5 35 35 H 1.09000 * 109.46983 * 55.00293 * 9 6 5 36 36 H 0.96998 * 119.99830 * 179.97438 * 13 12 10 37 37 H 0.96700 * 113.99698 * 89.97588 * 22 21 20 38 38 H 1.09004 * 109.46475 * 89.97681 * 24 23 21 39 39 H 1.08994 * 109.47159 * 209.97950 * 24 23 21 40 40 H 1.09000 * 109.46631 * 329.98224 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5745 7 1 1.9691 -1.4080 3.7500 8 6 4.0385 -0.9790 3.3329 9 6 2.5427 0.3850 4.7973 10 6 2.9305 -0.3942 6.0275 11 1 3.1888 -1.4396 5.9455 12 6 2.9566 0.2278 7.2577 13 7 2.6425 1.5010 7.3576 14 14 3.4365 -0.7382 8.7828 15 1 3.7415 -2.1414 8.4043 16 1 4.6368 -0.1209 9.4022 17 1 2.3135 -0.7200 9.7542 18 6 2.0323 -0.7104 -1.2305 19 7 2.0334 -1.9980 -1.4330 20 7 2.5325 -2.2607 -2.5880 21 6 2.8789 -1.1479 -3.1869 22 8 3.4382 -1.0356 -4.4163 23 7 2.5709 -0.1246 -2.3407 24 6 2.7759 1.3072 -2.5734 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 2.9173 -1.1205 1.0287 29 1 2.7589 1.0461 2.1182 30 1 1.0871 0.6163 2.5525 31 1 4.4039 -1.5171 4.2077 32 1 4.0758 -1.6333 2.4617 33 1 4.6645 -0.1042 3.1573 34 1 3.2364 1.2143 4.6587 35 1 1.5314 0.7734 4.9170 36 1 2.6604 1.9385 8.2232 37 1 2.7960 -0.9471 -5.1339 38 1 1.8913 1.7279 -3.0516 39 1 2.9478 1.8091 -1.6213 40 1 3.6413 1.4498 -3.2207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895173891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:23 Heat of formation + Delta-G solvation = 31.562093 kcal Electronic energy + Delta-G solvation = -20423.562242 eV Core-core repulsion = 17275.094037 eV Total energy + Delta-G solvation = -3148.468204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.28682 -38.15222 -37.41928 -35.39939 -34.59686 -32.33126 -30.23647 -28.95990 -27.98835 -26.78429 -25.62467 -23.78896 -22.67737 -22.08997 -20.44939 -19.15453 -18.99006 -17.36685 -16.70416 -16.45690 -15.94359 -15.29835 -14.83949 -14.62765 -14.18456 -13.83658 -13.45150 -13.29238 -13.13181 -12.81087 -12.55100 -12.16111 -12.07868 -11.85490 -11.73819 -11.49845 -11.20335 -10.86365 -10.73730 -10.52491 -10.41980 -10.31980 -10.20586 -9.72212 -9.32886 -9.12981 -8.94491 -8.32533 -8.27353 -5.97208 -3.97864 1.27989 1.77286 2.54294 3.33543 3.41286 3.42624 3.46055 3.96010 4.08790 4.27252 4.49931 4.56031 4.74172 4.93474 5.10426 5.17757 5.39058 5.40664 5.56879 5.61742 5.70489 5.74947 5.80433 6.05238 6.14406 6.21666 6.25739 6.45624 6.55814 6.89565 6.97718 7.11700 7.16832 7.26866 7.53479 7.70266 7.85526 8.03227 8.47316 8.47548 9.08741 9.65789 11.14375 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038740 B = 0.003293 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.588194 B = 8499.797226 C = 8684.770585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.176 3.824 3 H 0.058 0.942 4 N -0.670 5.670 5 C 0.064 3.936 6 C -0.084 4.084 7 H 0.069 0.931 8 C -0.135 4.135 9 C 0.029 3.971 10 C -0.511 4.511 11 H 0.057 0.943 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.889 3.111 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.188 3.812 19 N -0.251 5.251 20 N -0.283 5.283 21 C 0.338 3.662 22 O -0.436 6.436 23 N -0.486 5.486 24 C 0.070 3.930 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.346 0.654 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.258 0.742 37 H 0.404 0.596 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 2.490 -22.907 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.075 0.925 4 N -0.304 5.304 5 C -0.065 4.065 6 C -0.103 4.103 7 H 0.088 0.912 8 C -0.193 4.193 9 C -0.009 4.009 10 C -0.550 4.550 11 H 0.076 0.924 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.079 4.079 19 N -0.093 5.093 20 N -0.134 5.134 21 C 0.034 3.966 22 O -0.235 6.235 23 N -0.190 5.190 24 C -0.073 4.073 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.166 0.834 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.261 0.739 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.080 0.899 -22.256 22.371 hybrid contribution 0.995 1.724 -0.092 1.993 sum -1.085 2.623 -22.348 22.528 Atomic orbital electron populations 1.21786 0.92069 1.03829 1.01636 1.19906 0.96836 0.93724 0.83216 0.92464 1.60658 1.34460 1.32895 1.02408 1.22280 1.00618 0.93266 0.90286 1.21227 0.95455 0.99621 0.93969 0.91231 1.21754 0.97245 0.99877 1.00399 1.19111 0.97049 0.94144 0.90587 1.21286 1.45032 0.96609 0.92032 0.92431 1.25016 0.95614 0.94883 0.99058 1.69977 1.49417 1.10040 1.24350 0.86576 0.78061 0.80329 0.83294 1.19688 1.21175 1.21079 1.24924 1.00434 0.91270 0.91296 1.74345 1.15879 1.10740 1.08311 1.74683 1.15159 1.20416 1.03138 1.22059 1.01740 0.84239 0.88524 1.84914 1.33674 1.93884 1.11067 1.46694 1.47238 1.09150 1.15910 1.22142 1.03863 0.76576 1.04711 0.90821 0.93065 0.90642 0.83353 0.95778 0.90931 0.91707 0.94886 0.94167 0.96811 0.96580 0.93191 0.73922 0.89751 0.88705 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.40 37.16 0.35 -1.12 16 2 C 0.18 2.09 3.02 -68.86 -0.21 1.88 16 3 H 0.06 0.58 6.61 -51.93 -0.34 0.24 16 4 N -0.67 -9.88 6.30 -107.95 -0.68 -10.56 16 5 C 0.06 1.04 4.94 -3.82 -0.02 1.02 16 6 C -0.08 -1.69 2.55 -90.62 -0.23 -1.92 16 7 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 8 C -0.14 -2.55 8.77 37.16 0.33 -2.23 16 9 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 10 C -0.51 -14.23 8.41 -34.44 -0.29 -14.52 16 11 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 14 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.19 2.38 6.55 -154.11 -1.01 1.37 16 19 N -0.25 -3.92 12.18 32.97 0.40 -3.52 16 20 N -0.28 -4.28 12.22 29.65 0.36 -3.91 16 21 C 0.34 3.90 9.22 -88.76 -0.82 3.08 16 22 O -0.44 -3.54 13.62 -18.29 -0.25 -3.79 16 23 N -0.49 -4.89 3.20 -122.48 -0.39 -5.29 16 24 C 0.07 0.38 11.03 59.85 0.66 1.04 16 25 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.35 5.33 6.60 -39.29 -0.26 5.07 16 29 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 30 H 0.07 1.18 7.44 -51.93 -0.39 0.79 16 31 H 0.06 1.33 6.95 -51.93 -0.36 0.96 16 32 H 0.03 0.55 6.68 -51.92 -0.35 0.20 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.40 1.01 9.06 45.56 0.41 1.42 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.46 7.10 -51.93 -0.37 0.10 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -34.25 331.89 -6.65 -40.90 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.34 Total: -0.15 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.46 Total: -9.34 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.43 Total: -49.33 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.25 Total: -3.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.25 -6.65 -40.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895173891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.462 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds