Wall clock time and date at job start Mon Mar 30 2020 00:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47279 * 2 1 4 4 N 1.46905 * 109.46823 * 119.99956 * 2 1 3 5 5 C 1.46897 * 110.99864 * 274.99519 * 4 2 1 6 6 C 1.53005 * 109.46930 * 179.97438 * 5 4 2 7 7 H 1.08993 * 109.47083 * 305.00659 * 6 5 4 8 8 C 1.52999 * 109.46644 * 65.00675 * 6 5 4 9 9 C 1.53003 * 109.47095 * 185.00138 * 6 5 4 10 10 C 1.50698 * 109.46977 * 175.00324 * 9 6 5 11 11 H 1.07999 * 120.00302 * 0.02562 * 10 9 6 12 12 C 1.37873 * 120.00083 * 179.97438 * 10 9 6 13 13 N 1.31523 * 119.99906 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00401 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46995 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46880 * 120.00167 * 14 12 10 17 17 H 1.48498 * 109.47789 * 240.00483 * 14 12 10 18 18 C 1.50702 * 109.47037 * 239.99947 * 2 1 3 19 19 N 1.30338 * 126.35859 * 285.02338 * 18 2 1 20 20 N 1.28534 * 109.99189 * 179.97438 * 19 18 2 21 21 C 1.31035 * 109.86158 * 0.02562 * 20 19 18 22 22 O 1.35532 * 126.44703 * 179.97438 * 21 20 19 23 23 N 1.36308 * 107.10267 * 359.97438 * 21 20 19 24 24 C 1.46506 * 127.11981 * 179.97438 * 23 21 20 25 25 H 1.08999 * 109.47046 * 300.00321 * 1 2 3 26 26 H 1.08994 * 109.46790 * 59.99908 * 1 2 3 27 27 H 1.08999 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.00899 * 110.99360 * 151.04488 * 4 2 1 29 29 H 1.08995 * 109.47445 * 300.00160 * 5 4 2 30 30 H 1.08997 * 109.46842 * 60.00542 * 5 4 2 31 31 H 1.09007 * 109.47195 * 179.97438 * 8 6 5 32 32 H 1.09010 * 109.47240 * 299.99457 * 8 6 5 33 33 H 1.08995 * 109.47678 * 59.99717 * 8 6 5 34 34 H 1.09001 * 109.46817 * 295.00759 * 9 6 5 35 35 H 1.09000 * 109.46983 * 55.00293 * 9 6 5 36 36 H 0.96998 * 119.99830 * 179.97438 * 13 12 10 37 37 H 0.96700 * 113.99698 * 89.97588 * 22 21 20 38 38 H 1.09004 * 109.46475 * 89.97681 * 24 23 21 39 39 H 1.08994 * 109.47159 * 209.97950 * 24 23 21 40 40 H 1.09000 * 109.46631 * 329.98224 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5745 7 1 1.9691 -1.4080 3.7500 8 6 4.0385 -0.9790 3.3329 9 6 2.5427 0.3850 4.7973 10 6 2.9305 -0.3942 6.0275 11 1 3.1888 -1.4396 5.9455 12 6 2.9566 0.2278 7.2577 13 7 2.6425 1.5010 7.3576 14 14 3.4365 -0.7382 8.7828 15 1 3.7415 -2.1414 8.4043 16 1 4.6368 -0.1209 9.4022 17 1 2.3135 -0.7200 9.7542 18 6 2.0323 -0.7104 -1.2305 19 7 2.0334 -1.9980 -1.4330 20 7 2.5325 -2.2607 -2.5880 21 6 2.8789 -1.1479 -3.1869 22 8 3.4382 -1.0356 -4.4163 23 7 2.5709 -0.1246 -2.3407 24 6 2.7759 1.3072 -2.5734 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 2.9173 -1.1205 1.0287 29 1 2.7589 1.0461 2.1182 30 1 1.0871 0.6163 2.5525 31 1 4.4039 -1.5171 4.2077 32 1 4.0758 -1.6333 2.4617 33 1 4.6645 -0.1042 3.1573 34 1 3.2364 1.2143 4.6587 35 1 1.5314 0.7734 4.9170 36 1 2.6604 1.9385 8.2232 37 1 2.7960 -0.9471 -5.1339 38 1 1.8913 1.7279 -3.0516 39 1 2.9478 1.8091 -1.6213 40 1 3.6413 1.4498 -3.2207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895173891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:22 Heat of formation + Delta-G solvation = 4.217202 kcal Electronic energy + Delta-G solvation = -20424.748005 eV Core-core repulsion = 17275.094037 eV Total energy + Delta-G solvation = -3149.653968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.16470 -39.01681 -38.52020 -36.50763 -35.79387 -34.25347 -31.50867 -29.94651 -28.65304 -28.54978 -27.02931 -25.10883 -23.93922 -23.20609 -21.37367 -20.65980 -19.81549 -18.54256 -18.12471 -17.41254 -17.22977 -16.55959 -16.07927 -15.68331 -15.67342 -14.82795 -14.62803 -14.31020 -14.19312 -13.81802 -13.66993 -13.58822 -13.29398 -13.20239 -12.93010 -12.78204 -12.68461 -12.60831 -12.24597 -12.18878 -11.86933 -11.47784 -11.28119 -11.23705 -11.04845 -10.94219 -10.50720 -10.20872 -9.41297 -8.15503 -6.23227 0.48660 1.01920 1.40679 1.42074 1.54545 1.61293 2.43947 2.71942 3.07065 3.16695 3.18358 3.68464 3.86127 4.13416 4.24595 4.26378 4.30522 4.38867 4.49360 4.58718 4.65728 4.73599 4.78348 4.85004 4.91587 4.95327 5.06645 5.26759 5.35189 5.39988 5.49759 5.51898 5.59279 5.82918 5.93024 6.04623 6.32761 6.35999 6.41895 6.92697 7.44716 7.56023 8.96483 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.038740 B = 0.003293 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.588194 B = 8499.797226 C = 8684.770585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.178 3.822 3 H 0.084 0.916 4 N -0.678 5.678 5 C 0.079 3.921 6 C -0.077 4.077 7 H 0.055 0.945 8 C -0.127 4.127 9 C 0.035 3.965 10 C -0.528 4.528 11 H 0.057 0.943 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.957 3.043 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.186 3.814 19 N -0.293 5.293 20 N -0.332 5.332 21 C 0.353 3.647 22 O -0.435 6.435 23 N -0.478 5.478 24 C 0.060 3.940 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.342 0.658 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.043 0.957 34 H -0.006 1.006 35 H -0.007 1.007 36 H 0.262 0.738 37 H 0.430 0.570 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 3.178 -24.260 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.066 3.934 3 H 0.101 0.899 4 N -0.312 5.312 5 C -0.050 4.050 6 C -0.096 4.096 7 H 0.074 0.926 8 C -0.185 4.185 9 C -0.002 4.002 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.782 3.218 15 H -0.189 1.189 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.082 4.082 19 N -0.135 5.135 20 N -0.183 5.183 21 C 0.047 3.953 22 O -0.238 6.238 23 N -0.181 5.181 24 C -0.081 4.081 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.012 0.988 35 H 0.011 0.989 36 H 0.070 0.930 37 H 0.291 0.709 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.732 1.599 -23.654 23.771 hybrid contribution 0.895 1.566 0.204 1.815 sum -0.838 3.166 -23.449 23.677 Atomic orbital electron populations 1.21759 0.91401 1.02899 1.02852 1.19984 0.97246 0.94467 0.81714 0.89884 1.60559 1.34305 1.33086 1.03267 1.21971 1.00577 0.93026 0.89418 1.21020 0.96406 0.98318 0.93821 0.92648 1.21650 0.96157 1.00207 1.00455 1.18981 0.94822 0.94135 0.92283 1.21683 1.44733 0.96864 0.93340 0.92478 1.25875 0.95628 0.95860 1.02358 1.70089 1.50473 1.11579 1.25275 0.85522 0.77852 0.79118 0.79314 1.18924 1.20544 1.20536 1.24885 1.00549 0.90790 0.92014 1.74227 1.17425 1.12662 1.09153 1.74548 1.17396 1.22606 1.03734 1.22045 0.99918 0.83995 0.89331 1.84882 1.34555 1.93725 1.10590 1.46839 1.45994 1.10595 1.14644 1.22555 1.05856 0.73848 1.05811 0.90843 0.90566 0.92650 0.83782 0.94819 0.90879 0.93759 0.92520 0.93747 0.98795 0.98907 0.92968 0.70890 0.87125 0.87923 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.40 71.98 0.68 -1.95 16 2 C 0.18 3.88 3.02 44.17 0.13 4.02 16 3 H 0.08 1.42 6.61 -2.39 -0.02 1.40 16 4 N -0.68 -19.25 6.30 -495.44 -3.12 -22.37 16 5 C 0.08 2.50 4.94 86.31 0.43 2.93 16 6 C -0.08 -3.09 2.55 -10.79 -0.03 -3.12 16 7 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 8 C -0.13 -4.74 8.77 71.98 0.63 -4.11 16 9 C 0.04 1.81 4.45 29.85 0.13 1.95 16 10 C -0.53 -29.81 8.41 25.60 0.22 -29.59 16 11 H 0.06 3.16 7.06 -2.91 -0.02 3.14 16 12 C 0.00 0.00 5.46 84.65 0.46 0.46 16 13 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 14 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 C 0.19 4.44 6.55 137.67 0.90 5.34 16 19 N -0.29 -9.10 12.18 -49.60 -0.60 -9.70 16 20 N -0.33 -9.91 12.22 -173.68 -2.12 -12.04 16 21 C 0.35 7.53 9.22 179.70 1.66 9.18 16 22 O -0.43 -5.98 13.62 -88.35 -1.20 -7.18 16 23 N -0.48 -8.46 3.20 -652.23 -2.09 -10.55 16 24 C 0.06 0.43 11.03 127.77 1.41 1.84 16 25 H 0.07 1.48 7.45 -2.39 -0.02 1.46 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.34 10.17 6.60 -89.69 -0.59 9.58 16 29 H 0.03 1.01 8.05 -2.39 -0.02 0.99 16 30 H 0.07 2.32 7.44 -2.39 -0.02 2.30 16 31 H 0.04 1.80 6.95 -2.38 -0.02 1.79 16 32 H 0.06 1.83 6.68 -2.38 -0.02 1.81 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.43 0.91 9.06 -74.06 -0.67 0.24 16 38 H 0.11 0.25 8.14 -2.39 -0.02 0.24 16 39 H 0.10 0.62 7.10 -2.39 -0.02 0.60 16 40 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -75.48 331.89 -0.42 -75.90 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -0.21 Total: 8.33 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 6.62 Total: -13.06 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -7.65 Total: -110.72 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -1.20 Total: -7.18 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -75.48 -0.42 -75.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895173891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.113 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds