Wall clock time and date at job start Mon Mar 30 2020 00:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47013 * 2 1 4 4 C 1.52995 * 109.47438 * 120.00286 * 2 1 3 5 5 C 1.50696 * 109.47089 * 295.00073 * 4 2 1 6 6 H 1.07997 * 120.00411 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99669 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00421 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99524 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47420 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46703 * 120.00315 * 9 7 5 12 12 H 1.48498 * 109.46928 * 239.99990 * 9 7 5 13 13 C 1.52998 * 109.46992 * 240.00692 * 2 1 3 14 14 N 1.46896 * 109.47449 * 64.99931 * 13 2 1 15 15 C 1.46903 * 111.00405 * 180.02562 * 14 13 2 16 16 H 1.09005 * 109.46683 * 324.99753 * 15 14 13 17 17 C 1.53000 * 109.47367 * 84.99396 * 15 14 13 18 18 C 1.50701 * 109.47244 * 204.99924 * 15 14 13 19 19 N 1.30328 * 126.35898 * 315.02351 * 18 15 14 20 20 N 1.28537 * 109.99452 * 179.70875 * 19 18 15 21 21 C 1.31039 * 109.85460 * 0.44850 * 20 19 18 22 22 O 1.35534 * 126.44423 * 179.82190 * 21 20 19 23 23 N 1.36306 * 107.10889 * 359.56109 * 21 20 19 24 24 C 1.46498 * 127.12244 * 180.27984 * 23 21 20 25 25 H 1.08996 * 109.46762 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46852 * 299.99494 * 1 2 3 27 27 H 1.08997 * 109.47338 * 59.99465 * 1 2 3 28 28 H 1.09001 * 109.46660 * 55.00156 * 4 2 1 29 29 H 1.08999 * 109.47453 * 174.99806 * 4 2 1 30 30 H 0.97000 * 120.00461 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47085 * 304.99511 * 13 2 1 32 32 H 1.09005 * 109.47101 * 184.99645 * 13 2 1 33 33 H 1.00903 * 111.00549 * 56.04510 * 14 13 2 34 34 H 1.09002 * 109.46823 * 180.02562 * 17 15 14 35 35 H 1.08996 * 109.47415 * 300.00542 * 17 15 14 36 36 H 1.09005 * 109.46928 * 60.00506 * 17 15 14 37 37 H 0.96700 * 114.00259 * 269.69113 * 22 21 20 38 38 H 1.09004 * 109.46663 * 89.97590 * 24 23 21 39 39 H 1.08999 * 109.47540 * 209.97787 * 24 23 21 40 40 H 1.09004 * 109.47035 * 329.98213 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9925 -0.4025 3.7282 8 7 2.6757 -1.5194 3.8510 9 14 1.4990 0.5626 5.2496 10 1 0.7425 1.7741 4.8435 11 1 0.6443 -0.2861 6.1184 12 1 2.7173 0.9664 5.9965 13 6 2.0400 -0.7211 -1.2493 14 7 1.6514 0.0376 -2.4456 15 6 2.1247 -0.6268 -3.6673 16 1 3.0883 -1.0984 -3.4743 17 6 1.1121 -1.6915 -4.0939 18 6 2.2755 0.3923 -4.7672 19 7 1.4232 1.3290 -5.0749 20 7 1.8702 2.0239 -6.0595 21 6 3.0343 1.5584 -6.4405 22 8 3.8014 2.0369 -7.4502 23 7 3.3314 0.5062 -5.6265 24 6 4.5340 -0.3294 -5.6650 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6054 -1.7198 1.2949 29 1 3.1264 -0.7995 1.2055 30 1 2.9231 -1.8425 4.7316 31 1 1.6054 -1.7197 -1.2953 32 1 3.1263 -0.7993 -1.2057 33 1 1.9881 0.9876 -2.3967 34 1 1.4636 -2.1848 -5.0002 35 1 1.0030 -2.4286 -3.2984 36 1 0.1485 -1.2199 -4.2869 37 1 3.6240 1.6263 -8.3076 38 1 5.2976 0.1029 -5.0182 39 1 4.2901 -1.3336 -5.3182 40 1 4.9094 -0.3791 -6.6872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895173892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:26 Heat of formation + Delta-G solvation = 31.128995 kcal Electronic energy + Delta-G solvation = -20401.445322 eV Core-core repulsion = 17252.958337 eV Total energy + Delta-G solvation = -3148.486985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.28328 -38.14500 -37.36516 -35.38630 -34.59037 -32.30945 -30.27204 -28.97452 -27.98919 -26.76733 -25.39079 -23.77568 -22.67839 -22.09971 -20.47488 -19.25132 -19.01353 -17.32471 -16.71224 -16.29902 -15.87864 -15.27148 -14.91468 -14.57099 -14.14709 -13.87342 -13.60080 -13.34275 -13.04157 -12.74845 -12.40161 -12.17485 -11.96573 -11.96186 -11.66442 -11.37312 -11.20424 -10.84602 -10.73332 -10.51642 -10.40748 -10.25928 -10.22917 -9.69157 -9.32503 -9.11710 -8.93350 -8.32393 -8.24660 -5.97239 -3.97813 1.28881 1.77307 2.54439 3.33356 3.41062 3.42254 3.45950 3.96037 4.05953 4.27524 4.49915 4.59438 4.76601 4.92208 5.10044 5.17532 5.39029 5.40099 5.55337 5.60714 5.68854 5.75990 5.82899 6.12199 6.16047 6.26050 6.41604 6.54720 6.72968 6.95385 7.01977 7.18385 7.23307 7.30002 7.53748 7.69825 7.85287 8.03219 8.47629 8.47856 9.08852 9.65781 11.14361 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033843 B = 0.003300 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.144473 B = 8483.542726 C = 8520.437258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.667 5.667 15 C 0.176 3.824 16 H 0.058 0.942 17 C -0.134 4.134 18 C 0.188 3.812 19 N -0.250 5.250 20 N -0.283 5.283 21 C 0.339 3.661 22 O -0.436 6.436 23 N -0.486 5.486 24 C 0.072 3.928 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.017 0.983 29 H 0.011 0.989 30 H 0.258 0.742 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.345 0.655 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.403 0.597 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.170 -1.284 -22.496 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.065 4.065 14 N -0.300 5.300 15 C 0.063 3.937 16 H 0.076 0.924 17 C -0.193 4.193 18 C -0.079 4.079 19 N -0.092 5.092 20 N -0.134 5.134 21 C 0.035 3.965 22 O -0.235 6.235 23 N -0.190 5.190 24 C -0.071 4.071 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.164 0.836 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.260 0.740 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.754 -0.398 -22.072 22.247 hybrid contribution 2.084 -0.416 0.364 2.156 sum 4.838 -0.814 -21.708 22.256 Atomic orbital electron populations 1.21593 0.95435 1.00624 1.00455 1.21201 0.96301 0.98932 0.93664 0.92766 1.19122 0.95808 0.95605 0.90438 1.21288 1.34427 1.08277 0.90942 0.92439 1.25017 0.95347 0.95095 0.99112 1.69968 1.39272 1.21306 1.23250 0.86578 0.78236 0.80201 0.83267 1.19686 1.21085 1.21159 1.22294 0.97070 0.97976 0.89152 1.60605 1.63635 1.05875 0.99886 1.19895 0.98087 0.89995 0.85678 0.92448 1.21789 0.99695 0.97195 1.00643 1.24912 0.84911 1.00949 0.97136 1.74337 1.22728 1.03635 1.08539 1.74686 1.05710 1.22679 1.10355 1.22058 0.91985 0.89195 0.93311 1.84928 1.58637 1.61838 1.18101 1.46697 1.18653 1.25886 1.27768 1.22114 0.84922 0.95284 1.04763 0.94130 0.92775 0.93562 0.96489 0.97021 0.93190 0.91030 0.95698 0.83564 0.93096 0.90898 0.90645 0.73967 0.89657 0.88670 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.65 2.48 -90.62 -0.22 -1.87 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.28 8.41 -34.44 -0.29 -14.57 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.06 1.03 4.87 -3.83 -0.02 1.01 16 14 N -0.67 -9.62 5.75 -107.95 -0.62 -10.24 16 15 C 0.18 2.05 2.94 -68.86 -0.20 1.85 16 16 H 0.06 0.58 6.94 -51.93 -0.36 0.22 16 17 C -0.13 -1.42 9.40 37.16 0.35 -1.08 16 18 C 0.19 2.35 6.55 -154.11 -1.01 1.34 16 19 N -0.25 -3.88 12.18 32.97 0.40 -3.48 16 20 N -0.28 -4.27 12.22 29.65 0.36 -3.91 16 21 C 0.34 3.91 9.22 -88.76 -0.82 3.09 16 22 O -0.44 -3.57 13.62 -18.30 -0.25 -3.81 16 23 N -0.49 -4.89 3.20 -122.48 -0.39 -5.28 16 24 C 0.07 0.39 10.86 59.85 0.65 1.04 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 27 H 0.05 0.83 7.75 -51.93 -0.40 0.43 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.07 1.14 7.44 -51.93 -0.39 0.76 16 32 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.35 5.24 8.35 -39.29 -0.33 4.92 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.77 7.45 -51.93 -0.39 0.38 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 1.00 9.06 45.56 0.41 1.42 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.39 7.51 -51.93 -0.39 0.00 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -34.37 334.66 -6.70 -41.07 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.51 Total: -0.80 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.46 Total: -9.23 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.49 Total: -49.02 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.25 Total: -3.81 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.37 -6.70 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895173892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.204 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds