Wall clock time and date at job start Mon Mar 30 2020 00:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47013 * 2 1 4 4 C 1.52995 * 109.47438 * 120.00286 * 2 1 3 5 5 C 1.50696 * 109.47089 * 295.00073 * 4 2 1 6 6 H 1.07997 * 120.00411 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99669 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00421 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99524 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47420 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46703 * 120.00315 * 9 7 5 12 12 H 1.48498 * 109.46928 * 239.99990 * 9 7 5 13 13 C 1.52998 * 109.46992 * 240.00692 * 2 1 3 14 14 N 1.46896 * 109.47449 * 64.99931 * 13 2 1 15 15 C 1.46903 * 111.00405 * 180.02562 * 14 13 2 16 16 H 1.09005 * 109.46683 * 324.99753 * 15 14 13 17 17 C 1.53000 * 109.47367 * 84.99396 * 15 14 13 18 18 C 1.50701 * 109.47244 * 204.99924 * 15 14 13 19 19 N 1.30328 * 126.35898 * 315.02351 * 18 15 14 20 20 N 1.28537 * 109.99452 * 179.70875 * 19 18 15 21 21 C 1.31039 * 109.85460 * 0.44850 * 20 19 18 22 22 O 1.35534 * 126.44423 * 179.82190 * 21 20 19 23 23 N 1.36306 * 107.10889 * 359.56109 * 21 20 19 24 24 C 1.46498 * 127.12244 * 180.27984 * 23 21 20 25 25 H 1.08996 * 109.46762 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46852 * 299.99494 * 1 2 3 27 27 H 1.08997 * 109.47338 * 59.99465 * 1 2 3 28 28 H 1.09001 * 109.46660 * 55.00156 * 4 2 1 29 29 H 1.08999 * 109.47453 * 174.99806 * 4 2 1 30 30 H 0.97000 * 120.00461 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47085 * 304.99511 * 13 2 1 32 32 H 1.09005 * 109.47101 * 184.99645 * 13 2 1 33 33 H 1.00903 * 111.00549 * 56.04510 * 14 13 2 34 34 H 1.09002 * 109.46823 * 180.02562 * 17 15 14 35 35 H 1.08996 * 109.47415 * 300.00542 * 17 15 14 36 36 H 1.09005 * 109.46928 * 60.00506 * 17 15 14 37 37 H 0.96700 * 114.00259 * 269.69113 * 22 21 20 38 38 H 1.09004 * 109.46663 * 89.97590 * 24 23 21 39 39 H 1.08999 * 109.47540 * 209.97787 * 24 23 21 40 40 H 1.09004 * 109.47035 * 329.98213 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9925 -0.4025 3.7282 8 7 2.6757 -1.5194 3.8510 9 14 1.4990 0.5626 5.2496 10 1 0.7425 1.7741 4.8435 11 1 0.6443 -0.2861 6.1184 12 1 2.7173 0.9664 5.9965 13 6 2.0400 -0.7211 -1.2493 14 7 1.6514 0.0376 -2.4456 15 6 2.1247 -0.6268 -3.6673 16 1 3.0883 -1.0984 -3.4743 17 6 1.1121 -1.6915 -4.0939 18 6 2.2755 0.3923 -4.7672 19 7 1.4232 1.3290 -5.0749 20 7 1.8702 2.0239 -6.0595 21 6 3.0343 1.5584 -6.4405 22 8 3.8014 2.0369 -7.4502 23 7 3.3314 0.5062 -5.6265 24 6 4.5340 -0.3294 -5.6650 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6054 -1.7198 1.2949 29 1 3.1264 -0.7995 1.2055 30 1 2.9231 -1.8425 4.7316 31 1 1.6054 -1.7197 -1.2953 32 1 3.1263 -0.7993 -1.2057 33 1 1.9881 0.9876 -2.3967 34 1 1.4636 -2.1848 -5.0002 35 1 1.0030 -2.4286 -3.2984 36 1 0.1485 -1.2199 -4.2869 37 1 3.6240 1.6263 -8.3076 38 1 5.2976 0.1029 -5.0182 39 1 4.2901 -1.3336 -5.3182 40 1 4.9094 -0.3791 -6.6872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895173892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:26 Heat of formation + Delta-G solvation = 3.862846 kcal Electronic energy + Delta-G solvation = -20402.627671 eV Core-core repulsion = 17252.958337 eV Total energy + Delta-G solvation = -3149.669334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.15975 -38.97939 -38.48635 -36.50492 -35.79715 -34.23753 -31.53283 -29.92917 -28.68568 -28.55489 -26.78784 -25.12350 -23.93474 -23.19897 -21.40889 -20.75242 -19.81991 -18.49033 -18.09879 -17.44509 -16.99852 -16.52905 -16.20451 -15.74627 -15.46982 -15.07829 -14.54559 -14.39670 -14.05975 -13.78985 -13.64291 -13.42983 -13.27382 -13.15134 -12.90068 -12.75065 -12.74881 -12.55432 -12.25868 -12.13416 -11.91331 -11.45770 -11.28437 -11.23724 -11.05253 -10.91837 -10.51240 -10.20156 -9.38650 -8.15991 -6.23754 0.49283 1.02118 1.40231 1.41565 1.54138 1.61738 2.43472 2.71870 3.07064 3.16958 3.17858 3.68831 3.90596 4.13415 4.22157 4.26223 4.31780 4.43148 4.57285 4.57753 4.66338 4.76489 4.84976 4.93503 4.96144 5.00862 5.06191 5.33455 5.36724 5.50826 5.52255 5.56029 5.60300 5.84782 5.92576 6.02944 6.32077 6.35458 6.41951 6.92210 7.44189 7.56358 8.95988 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033843 B = 0.003300 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.144473 B = 8483.542726 C = 8520.437258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 H 0.047 0.953 4 C 0.035 3.965 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.956 3.044 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.079 3.921 14 N -0.672 5.672 15 C 0.178 3.822 16 H 0.082 0.918 17 C -0.130 4.130 18 C 0.187 3.813 19 N -0.292 5.292 20 N -0.332 5.332 21 C 0.352 3.648 22 O -0.435 6.435 23 N -0.479 5.479 24 C 0.061 3.939 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.062 0.938 28 H -0.005 1.005 29 H -0.010 1.010 30 H 0.262 0.738 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.340 0.660 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.429 0.571 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.930 -1.528 -23.626 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 H 0.065 0.935 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.782 3.218 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.050 4.050 14 N -0.305 5.305 15 C 0.066 3.934 16 H 0.099 0.901 17 C -0.189 4.189 18 C -0.082 4.082 19 N -0.133 5.133 20 N -0.183 5.183 21 C 0.047 3.953 22 O -0.238 6.238 23 N -0.181 5.181 24 C -0.080 4.080 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.014 0.986 29 H 0.008 0.992 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.291 0.709 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.524 -0.654 -23.246 23.521 hybrid contribution 1.932 -0.349 0.610 2.056 sum 5.457 -1.003 -22.636 23.306 Atomic orbital electron populations 1.21482 0.94824 1.00581 1.00217 1.21014 0.96678 0.98259 0.93472 0.93473 1.18994 0.94251 0.94773 0.92286 1.21682 1.34217 1.08473 0.92273 0.92511 1.25877 0.95347 0.96087 1.02408 1.70081 1.40355 1.22812 1.24159 0.85523 0.78063 0.78932 0.79300 1.18934 1.20496 1.20537 1.21979 0.97052 0.97672 0.88257 1.60524 1.64111 1.05586 1.00268 1.19979 0.99450 0.89795 0.84144 0.90083 1.21760 0.98550 0.96742 1.01801 1.24906 0.85338 1.00524 0.97426 1.74217 1.24545 1.05032 1.09535 1.74551 1.08006 1.24310 1.11462 1.22051 0.91175 0.88599 0.93506 1.84897 1.57775 1.62191 1.18921 1.46843 1.19107 1.25643 1.26557 1.22536 0.83246 0.95344 1.06868 0.94043 0.94774 0.91879 0.98629 0.99203 0.92955 0.90463 0.95363 0.84121 0.90648 0.90755 0.92517 0.70900 0.89268 0.86903 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.08 -3.03 2.48 -10.80 -0.03 -3.06 16 3 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.03 1.77 4.45 29.85 0.13 1.91 16 5 C -0.53 -29.89 8.41 25.60 0.22 -29.67 16 6 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16 7 C 0.00 0.00 5.46 84.66 0.46 0.47 16 8 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.08 2.49 4.87 86.30 0.42 2.91 16 14 N -0.67 -18.67 5.75 -495.43 -2.85 -21.52 16 15 C 0.18 3.81 2.94 44.17 0.13 3.94 16 16 H 0.08 1.39 6.94 -2.38 -0.02 1.37 16 17 C -0.13 -2.50 9.40 71.98 0.68 -1.82 16 18 C 0.19 4.42 6.55 137.67 0.90 5.32 16 19 N -0.29 -8.99 12.18 -49.60 -0.60 -9.60 16 20 N -0.33 -9.94 12.22 -173.67 -2.12 -12.06 16 21 C 0.35 7.58 9.22 179.70 1.66 9.23 16 22 O -0.43 -6.08 13.62 -88.38 -1.20 -7.29 16 23 N -0.48 -8.55 3.20 -652.23 -2.09 -10.64 16 24 C 0.06 0.45 10.86 127.77 1.39 1.84 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.03 1.42 6.95 -2.39 -0.02 1.41 16 27 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 28 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.08 2.36 7.44 -2.38 -0.02 2.35 16 32 H 0.03 0.87 8.06 -2.38 -0.02 0.85 16 33 H 0.34 10.13 8.35 -89.69 -0.75 9.38 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.41 7.45 -2.39 -0.02 1.39 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.43 0.91 9.06 -74.06 -0.67 0.24 16 38 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.11 0.47 7.51 -2.39 -0.02 0.45 16 40 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -75.48 334.66 -0.33 -75.81 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -0.37 Total: 7.33 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 6.60 Total: -12.69 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -7.38 Total: -109.93 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -1.20 Total: -7.29 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.48 -0.33 -75.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895173892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.672 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds