Wall clock time and date at job start Mon Mar 30 2020 00:32:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 109.47013 * 2 1
4 4 C 1.52995 * 109.47438 * 120.00286 * 2 1 3
5 5 C 1.50696 * 109.47089 * 295.00073 * 4 2 1
6 6 H 1.07997 * 120.00411 * 359.97438 * 5 4 2
7 7 C 1.37883 * 119.99669 * 179.97438 * 5 4 2
8 8 N 1.31506 * 120.00421 * 0.02562 * 7 5 4
9 9 Si 1.86807 * 119.99524 * 179.97438 * 7 5 4
10 10 H 1.48494 * 109.47420 * 0.02562 * 9 7 5
11 11 H 1.48508 * 109.46703 * 120.00315 * 9 7 5
12 12 H 1.48498 * 109.46928 * 239.99990 * 9 7 5
13 13 C 1.52998 * 109.46992 * 240.00692 * 2 1 3
14 14 N 1.46896 * 109.47449 * 64.99931 * 13 2 1
15 15 C 1.46903 * 111.00405 * 180.02562 * 14 13 2
16 16 H 1.09005 * 109.46683 * 324.99753 * 15 14 13
17 17 C 1.53000 * 109.47367 * 84.99396 * 15 14 13
18 18 C 1.50701 * 109.47244 * 204.99924 * 15 14 13
19 19 N 1.30328 * 126.35898 * 315.02351 * 18 15 14
20 20 N 1.28537 * 109.99452 * 179.70875 * 19 18 15
21 21 C 1.31039 * 109.85460 * 0.44850 * 20 19 18
22 22 O 1.35534 * 126.44423 * 179.82190 * 21 20 19
23 23 N 1.36306 * 107.10889 * 359.56109 * 21 20 19
24 24 C 1.46498 * 127.12244 * 180.27984 * 23 21 20
25 25 H 1.08996 * 109.46762 * 179.97438 * 1 2 3
26 26 H 1.08996 * 109.46852 * 299.99494 * 1 2 3
27 27 H 1.08997 * 109.47338 * 59.99465 * 1 2 3
28 28 H 1.09001 * 109.46660 * 55.00156 * 4 2 1
29 29 H 1.08999 * 109.47453 * 174.99806 * 4 2 1
30 30 H 0.97000 * 120.00461 * 179.97438 * 8 7 5
31 31 H 1.09006 * 109.47085 * 304.99511 * 13 2 1
32 32 H 1.09005 * 109.47101 * 184.99645 * 13 2 1
33 33 H 1.00903 * 111.00549 * 56.04510 * 14 13 2
34 34 H 1.09002 * 109.46823 * 180.02562 * 17 15 14
35 35 H 1.08996 * 109.47415 * 300.00542 * 17 15 14
36 36 H 1.09005 * 109.46928 * 60.00506 * 17 15 14
37 37 H 0.96700 * 114.00259 * 269.69113 * 22 21 20
38 38 H 1.09004 * 109.46663 * 89.97590 * 24 23 21
39 39 H 1.08999 * 109.47540 * 209.97787 * 24 23 21
40 40 H 1.09004 * 109.47035 * 329.98213 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 1.2491
5 6 1.6414 0.0569 2.4765
6 1 1.0807 0.9744 2.3757
7 6 1.9925 -0.4025 3.7282
8 7 2.6757 -1.5194 3.8510
9 14 1.4990 0.5626 5.2496
10 1 0.7425 1.7741 4.8435
11 1 0.6443 -0.2861 6.1184
12 1 2.7173 0.9664 5.9965
13 6 2.0400 -0.7211 -1.2493
14 7 1.6514 0.0376 -2.4456
15 6 2.1247 -0.6268 -3.6673
16 1 3.0883 -1.0984 -3.4743
17 6 1.1121 -1.6915 -4.0939
18 6 2.2755 0.3923 -4.7672
19 7 1.4232 1.3290 -5.0749
20 7 1.8702 2.0239 -6.0595
21 6 3.0343 1.5584 -6.4405
22 8 3.8014 2.0369 -7.4502
23 7 3.3314 0.5062 -5.6265
24 6 4.5340 -0.3294 -5.6650
25 1 -0.3633 -1.0276 -0.0005
26 1 -0.3633 0.5137 0.8900
27 1 -0.3634 0.5139 -0.8899
28 1 1.6054 -1.7198 1.2949
29 1 3.1264 -0.7995 1.2055
30 1 2.9231 -1.8425 4.7316
31 1 1.6054 -1.7197 -1.2953
32 1 3.1263 -0.7993 -1.2057
33 1 1.9881 0.9876 -2.3967
34 1 1.4636 -2.1848 -5.0002
35 1 1.0030 -2.4286 -3.2984
36 1 0.1485 -1.2199 -4.2869
37 1 3.6240 1.6263 -8.3076
38 1 5.2976 0.1029 -5.0182
39 1 4.2901 -1.3336 -5.3182
40 1 4.9094 -0.3791 -6.6872
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000895173892.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:32:26
Heat of formation + Delta-G solvation = 3.862846 kcal
Electronic energy + Delta-G solvation = -20402.627671 eV
Core-core repulsion = 17252.958337 eV
Total energy + Delta-G solvation = -3149.669334 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.164 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-44.15975 -38.97939 -38.48635 -36.50492 -35.79715 -34.23753 -31.53283 -29.92917
-28.68568 -28.55489 -26.78784 -25.12350 -23.93474 -23.19897 -21.40889 -20.75242
-19.81991 -18.49033 -18.09879 -17.44509 -16.99852 -16.52905 -16.20451 -15.74627
-15.46982 -15.07829 -14.54559 -14.39670 -14.05975 -13.78985 -13.64291 -13.42983
-13.27382 -13.15134 -12.90068 -12.75065 -12.74881 -12.55432 -12.25868 -12.13416
-11.91331 -11.45770 -11.28437 -11.23724 -11.05253 -10.91837 -10.51240 -10.20156
-9.38650 -8.15991 -6.23754 0.49283 1.02118 1.40231 1.41565 1.54138
1.61738 2.43472 2.71870 3.07064 3.16958 3.17858 3.68831 3.90596
4.13415 4.22157 4.26223 4.31780 4.43148 4.57285 4.57753 4.66338
4.76489 4.84976 4.93503 4.96144 5.00862 5.06191 5.33455 5.36724
5.50826 5.52255 5.56029 5.60300 5.84782 5.92576 6.02944 6.32077
6.35458 6.41951 6.92210 7.44189 7.56358 8.95988
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.033843 B = 0.003300 C = 0.003285
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 827.144473 B = 8483.542726 C = 8520.437258
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.075 4.075
3 H 0.047 0.953
4 C 0.035 3.965
5 C -0.528 4.528
6 H 0.057 0.943
7 C 0.000 4.000
8 N -0.933 5.933
9 Si 0.956 3.044
10 H -0.265 1.265
11 H -0.279 1.279
12 H -0.280 1.280
13 C 0.079 3.921
14 N -0.672 5.672
15 C 0.178 3.822
16 H 0.082 0.918
17 C -0.130 4.130
18 C 0.187 3.813
19 N -0.292 5.292
20 N -0.332 5.332
21 C 0.352 3.648
22 O -0.435 6.435
23 N -0.479 5.479
24 C 0.061 3.939
25 H 0.040 0.960
26 H 0.033 0.967
27 H 0.062 0.938
28 H -0.005 1.005
29 H -0.010 1.010
30 H 0.262 0.738
31 H 0.077 0.923
32 H 0.028 0.972
33 H 0.340 0.660
34 H 0.075 0.925
35 H 0.074 0.926
36 H 0.056 0.944
37 H 0.429 0.571
38 H 0.089 0.911
39 H 0.112 0.888
40 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.930 -1.528 -23.626 24.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.094 4.094
3 H 0.065 0.935
4 C -0.003 4.003
5 C -0.566 4.566
6 H 0.075 0.925
7 C -0.197 4.197
8 N -0.574 5.574
9 Si 0.782 3.218
10 H -0.189 1.189
11 H -0.205 1.205
12 H -0.205 1.205
13 C -0.050 4.050
14 N -0.305 5.305
15 C 0.066 3.934
16 H 0.099 0.901
17 C -0.189 4.189
18 C -0.082 4.082
19 N -0.133 5.133
20 N -0.183 5.183
21 C 0.047 3.953
22 O -0.238 6.238
23 N -0.181 5.181
24 C -0.080 4.080
25 H 0.060 0.940
26 H 0.052 0.948
27 H 0.081 0.919
28 H 0.014 0.986
29 H 0.008 0.992
30 H 0.070 0.930
31 H 0.095 0.905
32 H 0.046 0.954
33 H 0.159 0.841
34 H 0.094 0.906
35 H 0.092 0.908
36 H 0.075 0.925
37 H 0.291 0.709
38 H 0.107 0.893
39 H 0.131 0.869
40 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 3.524 -0.654 -23.246 23.521
hybrid contribution 1.932 -0.349 0.610 2.056
sum 5.457 -1.003 -22.636 23.306
Atomic orbital electron populations
1.21482 0.94824 1.00581 1.00217 1.21014 0.96678 0.98259 0.93472
0.93473 1.18994 0.94251 0.94773 0.92286 1.21682 1.34217 1.08473
0.92273 0.92511 1.25877 0.95347 0.96087 1.02408 1.70081 1.40355
1.22812 1.24159 0.85523 0.78063 0.78932 0.79300 1.18934 1.20496
1.20537 1.21979 0.97052 0.97672 0.88257 1.60524 1.64111 1.05586
1.00268 1.19979 0.99450 0.89795 0.84144 0.90083 1.21760 0.98550
0.96742 1.01801 1.24906 0.85338 1.00524 0.97426 1.74217 1.24545
1.05032 1.09535 1.74551 1.08006 1.24310 1.11462 1.22051 0.91175
0.88599 0.93506 1.84897 1.57775 1.62191 1.18921 1.46843 1.19107
1.25643 1.26557 1.22536 0.83246 0.95344 1.06868 0.94043 0.94774
0.91879 0.98629 0.99203 0.92955 0.90463 0.95363 0.84121 0.90648
0.90755 0.92517 0.70900 0.89268 0.86903 0.86344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16
2 C -0.08 -3.03 2.48 -10.80 -0.03 -3.06 16
3 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
4 C 0.03 1.77 4.45 29.85 0.13 1.91 16
5 C -0.53 -29.89 8.41 25.60 0.22 -29.67 16
6 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16
7 C 0.00 0.00 5.46 84.66 0.46 0.47 16
8 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16
9 Si 0.96 44.75 29.54 68.60 2.03 46.77 16
10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
13 C 0.08 2.49 4.87 86.30 0.42 2.91 16
14 N -0.67 -18.67 5.75 -495.43 -2.85 -21.52 16
15 C 0.18 3.81 2.94 44.17 0.13 3.94 16
16 H 0.08 1.39 6.94 -2.38 -0.02 1.37 16
17 C -0.13 -2.50 9.40 71.98 0.68 -1.82 16
18 C 0.19 4.42 6.55 137.67 0.90 5.32 16
19 N -0.29 -8.99 12.18 -49.60 -0.60 -9.60 16
20 N -0.33 -9.94 12.22 -173.67 -2.12 -12.06 16
21 C 0.35 7.58 9.22 179.70 1.66 9.23 16
22 O -0.43 -6.08 13.62 -88.38 -1.20 -7.29 16
23 N -0.48 -8.55 3.20 -652.23 -2.09 -10.64 16
24 C 0.06 0.45 10.86 127.77 1.39 1.84 16
25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16
26 H 0.03 1.42 6.95 -2.39 -0.02 1.41 16
27 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16
28 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16
29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
30 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16
31 H 0.08 2.36 7.44 -2.38 -0.02 2.35 16
32 H 0.03 0.87 8.06 -2.38 -0.02 0.85 16
33 H 0.34 10.13 8.35 -89.69 -0.75 9.38 16
34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16
35 H 0.07 1.41 7.45 -2.39 -0.02 1.39 16
36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16
37 H 0.43 0.91 9.06 -74.06 -0.67 0.24 16
38 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16
39 H 0.11 0.47 7.51 -2.39 -0.02 0.45 16
40 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16
Total: -1.00 -75.48 334.66 -0.33 -75.81
By element:
Atomic # 1 Polarization: 7.70 SS G_CDS: -0.37 Total: 7.33 kcal
Atomic # 6 Polarization: -19.29 SS G_CDS: 6.60 Total: -12.69 kcal
Atomic # 7 Polarization: -102.55 SS G_CDS: -7.38 Total: -109.93 kcal
Atomic # 8 Polarization: -6.08 SS G_CDS: -1.20 Total: -7.29 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -75.48 -0.33 -75.81 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895173892.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.672 kcal
(2) G-P(sol) polarization free energy of solvation -75.480 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.192 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.809 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.863 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds