Wall clock time and date at job start Mon Mar 30 2020 00:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 H 1.07999 * 120.00313 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99880 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47066 * 90.00098 * 9 7 5 11 11 H 1.48493 * 109.47265 * 210.00378 * 9 7 5 12 12 H 1.48503 * 109.47173 * 330.00700 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 N 1.46898 * 109.47092 * 295.00148 * 13 2 1 15 15 C 1.46910 * 111.00101 * 179.97438 * 14 13 2 16 16 H 1.09003 * 109.47088 * 34.99378 * 15 14 13 17 17 C 1.53007 * 109.46843 * 275.00235 * 15 14 13 18 18 C 1.50691 * 109.47003 * 155.00027 * 15 14 13 19 19 N 1.30327 * 126.36140 * 45.02846 * 18 15 14 20 20 N 1.28543 * 109.99749 * 179.97438 * 19 18 15 21 21 C 1.31034 * 109.85511 * 359.97438 * 20 19 18 22 22 O 1.35538 * 126.44956 * 180.02562 * 21 20 19 23 23 N 1.36323 * 107.10783 * 359.73526 * 21 20 19 24 24 C 1.46496 * 127.12156 * 180.28108 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 29 29 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 30 30 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46906 * 55.00224 * 13 2 1 32 32 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 33 33 H 1.00896 * 111.00049 * 303.95114 * 14 13 2 34 34 H 1.09003 * 109.46579 * 299.99455 * 17 15 14 35 35 H 1.08991 * 109.47181 * 59.99735 * 17 15 14 36 36 H 1.08998 * 109.46529 * 179.97438 * 17 15 14 37 37 H 0.96697 * 113.99596 * 89.96856 * 22 21 20 38 38 H 1.08997 * 109.47311 * 270.15482 * 24 23 21 39 39 H 1.08995 * 109.46938 * 30.15629 * 24 23 21 40 40 H 1.09005 * 109.46439 * 150.15331 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5185 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 2.5651 1.5432 -5.5816 11 1 1.3129 -0.3700 -6.3892 12 1 0.2283 1.2850 -4.9873 13 6 2.0400 -0.7212 1.2491 14 7 1.6514 0.0374 2.4455 15 6 2.1249 -0.6272 3.6672 16 1 3.0884 -1.0989 3.4741 17 6 1.1122 -1.6920 4.0936 18 6 2.2757 0.3917 4.7671 19 7 1.4229 1.3277 5.0755 20 7 1.8671 2.0187 6.0643 21 6 3.0338 1.5567 6.4415 22 8 3.8006 2.0344 7.4520 23 7 3.3284 0.5011 5.6308 24 6 4.5274 -0.3395 5.6744 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 3.1264 -0.7994 -1.2057 29 1 1.6055 -1.7197 -1.2953 30 1 2.9243 -1.8410 -4.7319 31 1 1.6055 -1.7198 1.2950 32 1 3.1264 -0.7995 1.2055 33 1 1.9882 0.9872 2.3966 34 1 0.1487 -1.2203 4.2867 35 1 1.0031 -2.4289 3.2980 36 1 1.4638 -2.1854 4.9997 37 1 3.6227 1.6232 8.3089 38 1 5.2953 0.0890 5.0304 39 1 4.8985 -0.3903 6.6980 40 1 4.2804 -1.3429 5.3272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895173893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:29 Heat of formation + Delta-G solvation = 31.140310 kcal Electronic energy + Delta-G solvation = -20400.725919 eV Core-core repulsion = 17252.239424 eV Total energy + Delta-G solvation = -3148.486494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.28295 -38.14499 -37.36484 -35.38668 -34.58932 -32.30862 -30.27217 -28.97459 -27.98987 -26.76549 -25.39045 -23.77518 -22.67773 -22.09847 -20.47590 -19.25245 -19.01622 -17.32903 -16.70372 -16.29582 -15.87862 -15.27059 -14.91349 -14.57260 -14.14886 -13.87438 -13.59962 -13.34369 -13.04298 -12.74753 -12.40226 -12.16903 -11.96557 -11.96230 -11.66490 -11.37073 -11.20227 -10.85005 -10.73218 -10.51478 -10.41068 -10.25900 -10.23166 -9.69210 -9.32505 -9.11653 -8.94390 -8.31892 -8.24697 -5.97015 -3.97667 1.28555 1.77500 2.54406 3.34485 3.40803 3.42294 3.44966 3.95999 4.05840 4.27502 4.49988 4.59381 4.76639 4.92108 5.09903 5.17603 5.39154 5.40069 5.55139 5.60524 5.68846 5.75957 5.82920 6.12158 6.15999 6.26006 6.41660 6.54792 6.72985 6.95450 7.02028 7.18398 7.23390 7.30073 7.53773 7.69689 7.85389 8.03324 8.47575 8.47867 9.08726 9.65836 11.14553 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033872 B = 0.003299 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.440578 B = 8486.229253 C = 8524.291367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.063 3.937 14 N -0.667 5.667 15 C 0.176 3.824 16 H 0.058 0.942 17 C -0.135 4.135 18 C 0.188 3.812 19 N -0.250 5.250 20 N -0.283 5.283 21 C 0.339 3.661 22 O -0.436 6.436 23 N -0.487 5.487 24 C 0.072 3.928 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.011 0.989 29 H 0.017 0.983 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.345 0.655 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.403 0.597 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 -1.309 22.484 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.065 4.065 14 N -0.300 5.300 15 C 0.063 3.937 16 H 0.076 0.924 17 C -0.193 4.193 18 C -0.079 4.079 19 N -0.092 5.092 20 N -0.134 5.134 21 C 0.035 3.965 22 O -0.235 6.235 23 N -0.190 5.190 24 C -0.071 4.071 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.164 0.836 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.260 0.740 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.741 -0.434 22.063 22.237 hybrid contribution 2.089 -0.398 -0.359 2.157 sum 4.830 -0.832 21.704 22.251 Atomic orbital electron populations 1.21595 0.95431 1.00628 1.00453 1.21201 0.96300 0.98932 0.93669 0.92768 1.19119 0.95797 0.95601 0.90418 1.21249 1.34517 1.08285 0.90962 0.92498 1.25014 0.95353 0.95083 0.99101 1.69960 1.39223 1.21260 1.23361 0.86628 0.78988 0.79803 0.82813 1.20798 1.21325 1.19814 1.22292 0.97072 0.97978 0.89150 1.60609 1.63624 1.05876 0.99885 1.19896 0.98086 0.89993 0.85689 0.92444 1.21790 0.99695 0.97195 1.00644 1.24908 0.85051 1.00899 0.97027 1.74337 1.22724 1.03800 1.08380 1.74687 1.05558 1.22869 1.10320 1.22071 0.91950 0.89162 0.93359 1.84934 1.58637 1.61843 1.18080 1.46705 1.18925 1.25584 1.27802 1.22112 0.85057 0.95162 1.04751 0.93559 0.94129 0.92777 0.97033 0.96489 0.93135 0.91031 0.95694 0.83562 0.90644 0.90894 0.93101 0.73990 0.89664 0.89083 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.65 2.48 -90.62 -0.22 -1.88 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.03 4.87 -3.83 -0.02 1.01 16 14 N -0.67 -9.62 5.75 -107.95 -0.62 -10.25 16 15 C 0.18 2.05 2.94 -68.86 -0.20 1.85 16 16 H 0.06 0.58 6.95 -51.93 -0.36 0.22 16 17 C -0.13 -1.43 9.40 37.16 0.35 -1.08 16 18 C 0.19 2.36 6.55 -154.12 -1.01 1.35 16 19 N -0.25 -3.88 12.18 32.97 0.40 -3.48 16 20 N -0.28 -4.27 12.22 29.65 0.36 -3.91 16 21 C 0.34 3.91 9.22 -88.75 -0.82 3.09 16 22 O -0.44 -3.57 13.62 -18.31 -0.25 -3.82 16 23 N -0.49 -4.89 3.20 -122.49 -0.39 -5.28 16 24 C 0.07 0.39 10.86 59.84 0.65 1.04 16 25 H 0.05 0.83 7.75 -51.93 -0.40 0.43 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.14 6.95 -51.93 -0.36 0.77 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.07 1.14 7.44 -51.93 -0.39 0.76 16 32 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.35 5.24 8.35 -39.29 -0.33 4.91 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.77 7.45 -51.93 -0.39 0.38 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.40 1.01 9.06 45.56 0.41 1.42 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.39 7.52 -51.93 -0.39 0.00 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -34.35 334.67 -6.70 -41.05 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.51 Total: -0.76 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.46 Total: -9.24 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.49 Total: -49.03 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.25 Total: -3.82 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.35 -6.70 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895173893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.194 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds