Wall clock time and date at job start Mon Mar 30 2020 00:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 H 1.07999 * 120.00313 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99880 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47066 * 90.00098 * 9 7 5 11 11 H 1.48493 * 109.47265 * 210.00378 * 9 7 5 12 12 H 1.48503 * 109.47173 * 330.00700 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 N 1.46898 * 109.47092 * 295.00148 * 13 2 1 15 15 C 1.46910 * 111.00101 * 179.97438 * 14 13 2 16 16 H 1.09003 * 109.47088 * 34.99378 * 15 14 13 17 17 C 1.53007 * 109.46843 * 275.00235 * 15 14 13 18 18 C 1.50691 * 109.47003 * 155.00027 * 15 14 13 19 19 N 1.30327 * 126.36140 * 45.02846 * 18 15 14 20 20 N 1.28543 * 109.99749 * 179.97438 * 19 18 15 21 21 C 1.31034 * 109.85511 * 359.97438 * 20 19 18 22 22 O 1.35538 * 126.44956 * 180.02562 * 21 20 19 23 23 N 1.36323 * 107.10783 * 359.73526 * 21 20 19 24 24 C 1.46496 * 127.12156 * 180.28108 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 29 29 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 30 30 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46906 * 55.00224 * 13 2 1 32 32 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 33 33 H 1.00896 * 111.00049 * 303.95114 * 14 13 2 34 34 H 1.09003 * 109.46579 * 299.99455 * 17 15 14 35 35 H 1.08991 * 109.47181 * 59.99735 * 17 15 14 36 36 H 1.08998 * 109.46529 * 179.97438 * 17 15 14 37 37 H 0.96697 * 113.99596 * 89.96856 * 22 21 20 38 38 H 1.08997 * 109.47311 * 270.15482 * 24 23 21 39 39 H 1.08995 * 109.46938 * 30.15629 * 24 23 21 40 40 H 1.09005 * 109.46439 * 150.15331 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5185 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 2.5651 1.5432 -5.5816 11 1 1.3129 -0.3700 -6.3892 12 1 0.2283 1.2850 -4.9873 13 6 2.0400 -0.7212 1.2491 14 7 1.6514 0.0374 2.4455 15 6 2.1249 -0.6272 3.6672 16 1 3.0884 -1.0989 3.4741 17 6 1.1122 -1.6920 4.0936 18 6 2.2757 0.3917 4.7671 19 7 1.4229 1.3277 5.0755 20 7 1.8671 2.0187 6.0643 21 6 3.0338 1.5567 6.4415 22 8 3.8006 2.0344 7.4520 23 7 3.3284 0.5011 5.6308 24 6 4.5274 -0.3395 5.6744 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 3.1264 -0.7994 -1.2057 29 1 1.6055 -1.7197 -1.2953 30 1 2.9243 -1.8410 -4.7319 31 1 1.6055 -1.7198 1.2950 32 1 3.1264 -0.7995 1.2055 33 1 1.9882 0.9872 2.3966 34 1 0.1487 -1.2203 4.2867 35 1 1.0031 -2.4289 3.2980 36 1 1.4638 -2.1854 4.9997 37 1 3.6227 1.6232 8.3089 38 1 5.2953 0.0890 5.0304 39 1 4.8985 -0.3903 6.6980 40 1 4.2804 -1.3429 5.3272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895173893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:28 Heat of formation + Delta-G solvation = 3.889897 kcal Electronic energy + Delta-G solvation = -20401.907585 eV Core-core repulsion = 17252.239424 eV Total energy + Delta-G solvation = -3149.668161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.15918 -38.97963 -38.48623 -36.50476 -35.79646 -34.23700 -31.53314 -29.92927 -28.68456 -28.55491 -26.78774 -25.12265 -23.93435 -23.19833 -21.40990 -20.75227 -19.82454 -18.48706 -18.10182 -17.43651 -16.99886 -16.53083 -16.20459 -15.74420 -15.47092 -15.07921 -14.53946 -14.39622 -14.05586 -13.79293 -13.64481 -13.42833 -13.27166 -13.15167 -12.90289 -12.76606 -12.73106 -12.55443 -12.25695 -12.13073 -11.92301 -11.46028 -11.28279 -11.24059 -11.05341 -10.92443 -10.50631 -10.20279 -9.38711 -8.15811 -6.23672 0.49056 1.02203 1.41316 1.41798 1.53049 1.61748 2.43594 2.71893 3.07011 3.16954 3.17972 3.68817 3.90570 4.13380 4.22177 4.26364 4.31623 4.43157 4.57260 4.57771 4.66325 4.76405 4.84803 4.93423 4.96107 5.00794 5.06167 5.33409 5.36631 5.50733 5.52097 5.56000 5.60161 5.84776 5.92561 6.02886 6.32118 6.35462 6.41967 6.92088 7.44206 7.56256 8.95982 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033872 B = 0.003299 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.440578 B = 8486.229253 C = 8524.291367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 H 0.047 0.953 4 C 0.035 3.965 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.079 3.921 14 N -0.672 5.672 15 C 0.178 3.822 16 H 0.082 0.918 17 C -0.130 4.130 18 C 0.187 3.813 19 N -0.292 5.292 20 N -0.332 5.332 21 C 0.352 3.648 22 O -0.435 6.435 23 N -0.479 5.479 24 C 0.061 3.939 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.033 0.967 28 H -0.011 1.011 29 H -0.005 1.005 30 H 0.262 0.738 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.340 0.660 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.429 0.571 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 -1.537 23.619 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 H 0.065 0.935 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.050 4.050 14 N -0.305 5.305 15 C 0.066 3.934 16 H 0.099 0.901 17 C -0.189 4.189 18 C -0.082 4.082 19 N -0.133 5.133 20 N -0.183 5.183 21 C 0.047 3.953 22 O -0.238 6.238 23 N -0.182 5.182 24 C -0.080 4.080 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.008 0.992 29 H 0.014 0.986 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.159 0.841 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.291 0.709 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.509 -0.673 23.243 23.516 hybrid contribution 1.938 -0.335 -0.606 2.058 sum 5.448 -1.009 22.637 23.306 Atomic orbital electron populations 1.21484 0.94829 1.00576 1.00208 1.21013 0.96668 0.98268 0.93470 0.93456 1.18992 0.94237 0.94770 0.92277 1.21656 1.34309 1.08506 0.92290 0.92504 1.25877 0.95345 0.96073 1.02406 1.70077 1.40320 1.22781 1.24225 0.85573 0.78934 0.78467 0.78855 1.20031 1.20820 1.19036 1.21977 0.97053 0.97675 0.88258 1.60527 1.64100 1.05590 1.00266 1.19981 0.99448 0.89794 0.84155 0.90081 1.21761 0.98549 0.96743 1.01802 1.24902 0.85477 1.00474 0.97324 1.74217 1.24544 1.05202 1.09371 1.74552 1.07851 1.24505 1.11412 1.22064 0.91141 0.88575 0.93557 1.84902 1.57778 1.62198 1.18897 1.46851 1.19375 1.25344 1.26584 1.22535 0.83395 0.95202 1.06862 0.91866 0.94053 0.94796 0.99221 0.98634 0.92951 0.90467 0.95360 0.84115 0.92520 0.90751 0.90651 0.70925 0.89265 0.86346 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.08 -3.03 2.48 -10.79 -0.03 -3.06 16 3 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.03 1.79 4.45 29.85 0.13 1.92 16 5 C -0.53 -29.96 8.41 25.60 0.22 -29.75 16 6 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.08 2.49 4.87 86.30 0.42 2.91 16 14 N -0.67 -18.67 5.75 -495.43 -2.85 -21.52 16 15 C 0.18 3.81 2.94 44.17 0.13 3.94 16 16 H 0.08 1.39 6.95 -2.39 -0.02 1.37 16 17 C -0.13 -2.50 9.40 71.98 0.68 -1.82 16 18 C 0.19 4.42 6.55 137.67 0.90 5.32 16 19 N -0.29 -8.99 12.18 -49.61 -0.60 -9.60 16 20 N -0.33 -9.93 12.22 -173.66 -2.12 -12.05 16 21 C 0.35 7.58 9.22 179.69 1.66 9.23 16 22 O -0.43 -6.09 13.62 -88.43 -1.20 -7.29 16 23 N -0.48 -8.55 3.20 -652.24 -2.09 -10.63 16 24 C 0.06 0.45 10.86 127.77 1.39 1.84 16 25 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.03 1.42 6.95 -2.38 -0.02 1.40 16 28 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 29 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.08 2.36 7.44 -2.39 -0.02 2.35 16 32 H 0.03 0.87 8.06 -2.38 -0.02 0.85 16 33 H 0.34 10.13 8.35 -89.70 -0.75 9.38 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.41 7.45 -2.39 -0.02 1.39 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.43 0.92 9.06 -74.06 -0.67 0.25 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.11 0.47 7.52 -2.38 -0.02 0.45 16 Total: -1.00 -75.46 334.67 -0.33 -75.79 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -0.37 Total: 7.44 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 6.60 Total: -12.74 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -7.38 Total: -109.96 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -1.20 Total: -7.29 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.46 -0.33 -75.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895173893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.677 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds