Wall clock time and date at job start Mon Mar 30 2020 01:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47607 * 2 1 4 4 C 1.53003 * 109.47312 * 239.99392 * 2 1 3 5 5 C 1.53000 * 109.47312 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46660 * 60.00476 * 5 4 2 7 7 C 1.52996 * 109.47156 * 299.99819 * 6 5 4 8 8 C 1.52992 * 109.47306 * 60.00337 * 7 6 5 9 9 H 1.09001 * 109.47743 * 59.99682 * 8 7 6 10 10 C 1.52996 * 109.47646 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.47298 * 295.00378 * 10 8 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 8 13 13 O 1.34231 * 120.00640 * 180.27355 * 11 10 8 14 14 C 1.45193 * 117.00126 * 179.71955 * 13 11 10 15 15 C 1.53006 * 109.46665 * 179.97438 * 14 13 11 16 16 C 1.53009 * 109.46922 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46874 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00063 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99583 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00139 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99712 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47169 * 89.99891 * 21 19 17 23 23 H 1.48501 * 109.46997 * 209.99391 * 21 19 17 24 24 H 1.48501 * 109.47313 * 330.00044 * 21 19 17 25 25 H 1.08990 * 109.46936 * 300.00361 * 1 2 3 26 26 H 1.08997 * 109.46750 * 60.00423 * 1 2 3 27 27 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46611 * 60.00410 * 4 2 1 29 29 H 1.08993 * 109.47281 * 300.00807 * 4 2 1 30 30 H 1.09000 * 109.47198 * 300.00652 * 5 4 2 31 31 H 1.08998 * 109.47275 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.46817 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47171 * 60.00159 * 6 5 4 34 34 H 1.09000 * 109.47358 * 300.00226 * 7 6 5 35 35 H 1.09003 * 109.46898 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47764 * 174.99794 * 10 8 7 37 37 H 1.09006 * 109.46938 * 54.99572 * 10 8 7 38 38 H 1.08997 * 109.47488 * 299.99586 * 14 13 11 39 39 H 1.08997 * 109.47515 * 60.00401 * 14 13 11 40 40 H 1.08997 * 109.47361 * 299.99752 * 15 14 13 41 41 H 1.08997 * 109.47194 * 60.00320 * 15 14 13 42 42 H 1.08997 * 109.46804 * 299.99976 * 16 15 14 43 43 H 1.08997 * 109.47020 * 60.00097 * 16 15 14 44 44 H 0.96998 * 120.00042 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5701 -0.7219 -1.2488 6 6 4.0794 -1.4436 0.0005 7 6 3.5694 -0.7223 1.2496 8 6 2.0395 -0.7217 1.2493 9 1 1.6757 -1.7491 1.2491 10 6 1.5294 -0.0009 2.4988 11 6 1.9275 -0.7799 3.7258 12 8 2.5545 -1.8066 3.6125 13 8 1.5805 -0.3366 4.9443 14 6 1.9924 -1.1411 6.0806 15 6 1.5105 -0.4812 7.3741 16 6 1.9452 -1.3287 8.5716 17 6 1.4700 -0.6791 9.8456 18 1 0.9140 0.2459 9.8053 19 6 1.7460 -1.2652 11.0628 20 7 2.4235 -2.3913 11.1118 21 14 1.1575 -0.4595 12.6421 22 1 -0.1949 -0.9692 12.9837 23 1 2.1005 -0.7816 13.7432 24 1 1.0991 1.0125 12.4550 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6768 -0.2075 -2.1392 29 1 1.6767 -1.7490 -1.2492 30 1 3.9338 0.3056 -1.2486 31 1 3.9334 -1.2355 -2.1390 32 1 5.1694 -1.4436 0.0010 33 1 3.7157 -2.4711 0.0002 34 1 3.9331 0.3052 1.2499 35 1 3.9327 -1.2361 2.1396 36 1 0.4431 0.0778 2.4549 37 1 1.9645 0.9975 2.5454 38 1 1.5583 -2.1374 5.9969 39 1 3.0795 -1.2187 6.0959 40 1 1.9451 0.5149 7.4577 41 1 0.4234 -0.4034 7.3592 42 1 1.5110 -2.3250 8.4883 43 1 3.0323 -1.4062 8.5864 44 1 2.6179 -2.8034 11.9681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920728036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:08 Heat of formation + Delta-G solvation = -142.441970 kcal Electronic energy + Delta-G solvation = -20401.762189 eV Core-core repulsion = 17316.996194 eV Total energy + Delta-G solvation = -3084.765995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52271 -38.98066 -36.39027 -33.98113 -33.38998 -32.27441 -31.65941 -28.42613 -26.97261 -26.08657 -23.46555 -22.39352 -21.37835 -20.46974 -20.18176 -19.85644 -17.38436 -16.50495 -16.41394 -15.82404 -15.28378 -14.90286 -14.53594 -14.47118 -14.30666 -13.93163 -13.65862 -12.89485 -12.69249 -12.39362 -12.25041 -12.13733 -12.06932 -11.80917 -11.73299 -11.67525 -11.19709 -11.05166 -10.96405 -10.66086 -10.64001 -10.61350 -10.51118 -10.33773 -10.18556 -9.94129 -9.70338 -9.46794 -9.15761 -8.38670 -6.03402 -4.06441 2.40990 2.96132 3.31031 3.37170 3.40811 4.35303 4.41805 4.44155 4.50272 4.77374 4.86275 4.96598 5.11927 5.13586 5.23519 5.29668 5.32525 5.32947 5.38467 5.49203 5.53962 5.57249 5.60195 5.65918 5.69786 5.80908 5.85952 5.96771 5.99506 6.02240 6.04914 6.10291 6.26794 6.32205 6.55340 6.57621 6.89560 7.00784 7.60649 7.71847 7.94897 8.01175 8.36397 8.99907 9.57827 11.08100 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047512 B = 0.002716 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.185017 B =10307.274034 C =10683.921513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.069 4.069 9 H 0.080 0.920 10 C -0.115 4.115 11 C 0.455 3.545 12 O -0.510 6.510 13 O -0.361 6.361 14 C 0.068 3.932 15 C -0.109 4.109 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 5.136 -25.441 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.088 4.088 9 H 0.098 0.902 10 C -0.153 4.153 11 C 0.298 3.702 12 O -0.399 6.399 13 O -0.277 6.277 14 C -0.005 4.005 15 C -0.147 4.147 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.694 4.691 -25.299 25.740 hybrid contribution -0.203 0.208 1.034 1.074 sum -0.896 4.899 -24.265 24.770 Atomic orbital electron populations 1.21948 0.95233 1.02095 1.01852 1.21157 0.95434 0.99623 0.94258 0.90987 1.21570 0.95585 1.00733 0.97115 1.21559 0.95634 1.00698 0.97910 1.21494 1.00080 0.99568 0.94305 1.21747 0.94479 1.00688 0.99200 1.21028 0.96177 0.99913 0.91672 0.90165 1.21573 1.03960 1.00151 0.89590 1.23674 0.76597 0.84446 0.85452 1.90622 1.37390 1.24599 1.87304 1.86501 1.72216 1.53523 1.15502 1.23467 0.99999 0.94176 0.82830 1.21760 1.00979 1.00409 0.91515 1.19052 0.96969 0.94894 0.90420 1.21178 1.35338 1.08555 0.90882 0.92433 1.25035 0.95157 0.94987 0.99320 1.69966 1.39731 1.18092 1.25610 0.86545 0.78540 0.79741 0.82889 1.20605 1.21186 1.19809 0.92166 0.92657 0.92534 0.92066 0.91928 0.92128 0.92284 0.92185 0.91959 0.92437 0.89999 0.87596 0.87951 0.91616 0.91623 0.92196 0.92197 0.96264 0.96249 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.85 37.16 0.33 -0.72 16 2 C -0.09 -0.65 2.25 -90.61 -0.20 -0.85 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.11 -0.80 5.20 -26.73 -0.14 -0.94 16 5 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 6 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 7 C -0.12 -1.27 4.94 -26.74 -0.13 -1.40 16 8 C -0.07 -0.67 1.36 -90.62 -0.12 -0.79 16 9 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 10 C -0.12 -1.17 5.07 -27.89 -0.14 -1.31 16 11 C 0.46 6.76 7.67 36.00 0.28 7.04 16 12 O -0.51 -8.83 13.72 -18.76 -0.26 -9.08 16 13 O -0.36 -6.08 10.22 -39.26 -0.40 -6.48 16 14 C 0.07 1.28 5.47 37.16 0.20 1.49 16 15 C -0.11 -2.30 5.53 -26.72 -0.15 -2.44 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 21 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.06 0.39 6.32 -51.93 -0.33 0.07 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.06 5.96 -51.93 -0.31 0.75 16 36 H 0.11 0.92 6.17 -51.93 -0.32 0.60 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.25 8.13 -51.93 -0.42 0.82 16 39 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -30.86 346.68 -8.76 -39.62 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -8.10 Total: -4.33 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -0.95 Total: -15.31 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.66 Total: -15.57 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.86 -8.76 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920728036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.822 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds