Wall clock time and date at job start Mon Mar 30 2020 01:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47607 * 2 1 4 4 C 1.53003 * 109.47312 * 239.99392 * 2 1 3 5 5 C 1.53000 * 109.47312 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46660 * 60.00476 * 5 4 2 7 7 C 1.52996 * 109.47156 * 299.99819 * 6 5 4 8 8 C 1.52992 * 109.47306 * 60.00337 * 7 6 5 9 9 H 1.09001 * 109.47743 * 59.99682 * 8 7 6 10 10 C 1.52996 * 109.47646 * 179.97438 * 8 7 6 11 11 C 1.50696 * 109.47298 * 295.00378 * 10 8 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 8 13 13 O 1.34231 * 120.00640 * 180.27355 * 11 10 8 14 14 C 1.45193 * 117.00126 * 179.71955 * 13 11 10 15 15 C 1.53006 * 109.46665 * 179.97438 * 14 13 11 16 16 C 1.53009 * 109.46922 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.46874 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00063 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99583 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00139 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99712 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47169 * 89.99891 * 21 19 17 23 23 H 1.48501 * 109.46997 * 209.99391 * 21 19 17 24 24 H 1.48501 * 109.47313 * 330.00044 * 21 19 17 25 25 H 1.08990 * 109.46936 * 300.00361 * 1 2 3 26 26 H 1.08997 * 109.46750 * 60.00423 * 1 2 3 27 27 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46611 * 60.00410 * 4 2 1 29 29 H 1.08993 * 109.47281 * 300.00807 * 4 2 1 30 30 H 1.09000 * 109.47198 * 300.00652 * 5 4 2 31 31 H 1.08998 * 109.47275 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.46817 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47171 * 60.00159 * 6 5 4 34 34 H 1.09000 * 109.47358 * 300.00226 * 7 6 5 35 35 H 1.09003 * 109.46898 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47764 * 174.99794 * 10 8 7 37 37 H 1.09006 * 109.46938 * 54.99572 * 10 8 7 38 38 H 1.08997 * 109.47488 * 299.99586 * 14 13 11 39 39 H 1.08997 * 109.47515 * 60.00401 * 14 13 11 40 40 H 1.08997 * 109.47361 * 299.99752 * 15 14 13 41 41 H 1.08997 * 109.47194 * 60.00320 * 15 14 13 42 42 H 1.08997 * 109.46804 * 299.99976 * 16 15 14 43 43 H 1.08997 * 109.47020 * 60.00097 * 16 15 14 44 44 H 0.96998 * 120.00042 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5701 -0.7219 -1.2488 6 6 4.0794 -1.4436 0.0005 7 6 3.5694 -0.7223 1.2496 8 6 2.0395 -0.7217 1.2493 9 1 1.6757 -1.7491 1.2491 10 6 1.5294 -0.0009 2.4988 11 6 1.9275 -0.7799 3.7258 12 8 2.5545 -1.8066 3.6125 13 8 1.5805 -0.3366 4.9443 14 6 1.9924 -1.1411 6.0806 15 6 1.5105 -0.4812 7.3741 16 6 1.9452 -1.3287 8.5716 17 6 1.4700 -0.6791 9.8456 18 1 0.9140 0.2459 9.8053 19 6 1.7460 -1.2652 11.0628 20 7 2.4235 -2.3913 11.1118 21 14 1.1575 -0.4595 12.6421 22 1 -0.1949 -0.9692 12.9837 23 1 2.1005 -0.7816 13.7432 24 1 1.0991 1.0125 12.4550 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6768 -0.2075 -2.1392 29 1 1.6767 -1.7490 -1.2492 30 1 3.9338 0.3056 -1.2486 31 1 3.9334 -1.2355 -2.1390 32 1 5.1694 -1.4436 0.0010 33 1 3.7157 -2.4711 0.0002 34 1 3.9331 0.3052 1.2499 35 1 3.9327 -1.2361 2.1396 36 1 0.4431 0.0778 2.4549 37 1 1.9645 0.9975 2.5454 38 1 1.5583 -2.1374 5.9969 39 1 3.0795 -1.2187 6.0959 40 1 1.9451 0.5149 7.4577 41 1 0.4234 -0.4034 7.3592 42 1 1.5110 -2.3250 8.4883 43 1 3.0323 -1.4062 8.5864 44 1 2.6179 -2.8034 11.9681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920728036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:07 Heat of formation + Delta-G solvation = -157.283575 kcal Electronic energy + Delta-G solvation = -20402.405769 eV Core-core repulsion = 17316.996194 eV Total energy + Delta-G solvation = -3085.409575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69170 -39.83057 -37.74501 -35.93929 -34.15688 -33.65518 -32.95017 -29.56998 -28.48536 -26.86481 -25.21872 -23.36671 -22.20196 -22.14060 -21.27163 -20.60429 -18.76864 -18.38311 -17.74810 -17.19906 -16.50541 -16.01798 -15.92240 -15.38986 -15.08720 -14.92771 -14.76817 -14.28885 -13.97273 -13.83992 -13.56766 -13.33396 -13.06023 -12.84339 -12.70981 -12.55833 -12.50743 -12.36809 -12.33302 -12.05948 -11.88918 -11.76370 -11.69915 -11.44527 -11.41715 -11.29237 -11.25466 -10.83946 -10.72828 -10.58628 -8.22928 -6.34774 1.21222 1.40852 1.42585 1.53781 1.72057 2.40805 3.10909 3.57626 3.67454 3.77384 3.96136 3.98286 4.06015 4.13902 4.26004 4.36090 4.40883 4.45818 4.53483 4.60583 4.65799 4.72760 4.77921 4.79238 4.88327 4.90258 5.00690 5.06403 5.08959 5.20176 5.22993 5.28482 5.33447 5.38730 5.42682 5.47586 5.52536 5.61873 5.61933 5.67121 5.78709 6.17839 6.75593 6.81728 7.34918 8.89445 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.047512 B = 0.002716 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.185017 B =10307.274034 C =10683.921513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 H 0.084 0.916 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.066 4.066 9 H 0.060 0.940 10 C -0.107 4.107 11 C 0.451 3.549 12 O -0.539 6.539 13 O -0.362 6.362 14 C 0.078 3.922 15 C -0.094 4.094 16 C 0.026 3.974 17 C -0.543 4.543 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.261 1.261 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.067 0.933 42 H -0.004 1.004 43 H -0.004 1.004 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 7.289 -26.544 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 H 0.102 0.898 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.162 4.162 8 C -0.085 4.085 9 H 0.079 0.921 10 C -0.144 4.144 11 C 0.296 3.704 12 O -0.429 6.429 13 O -0.278 6.278 14 C 0.004 3.996 15 C -0.131 4.131 16 C -0.012 4.012 17 C -0.581 4.581 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.185 1.185 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.817 6.855 -26.428 27.363 hybrid contribution 0.186 -0.511 1.311 1.420 sum -1.631 6.344 -25.116 25.957 Atomic orbital electron populations 1.21956 0.94509 1.01964 1.02720 1.21124 0.95966 0.99812 0.92914 0.89765 1.21585 0.95284 1.00534 0.97589 1.21538 0.95890 1.00917 0.97069 1.21489 1.00155 0.99051 0.94793 1.21715 0.95164 1.00967 0.98331 1.21010 0.95586 0.99216 0.92650 0.92143 1.21765 1.05422 1.00324 0.86904 1.24707 0.75639 0.84438 0.85640 1.90626 1.38690 1.26145 1.87430 1.86495 1.72430 1.53131 1.15774 1.23068 0.99435 0.93868 0.83181 1.21454 1.01300 0.99692 0.90668 1.18937 0.95255 0.94580 0.92389 1.21627 1.35478 1.09013 0.92005 0.91613 1.26035 0.95120 0.95502 1.03343 1.70103 1.40951 1.19683 1.26741 0.85371 0.78144 0.79166 0.77908 1.19665 1.20792 1.18484 0.91683 0.91430 0.93202 0.90488 0.92679 0.91321 0.91478 0.92134 0.93176 0.91304 0.93315 0.85395 0.85582 0.92229 0.92243 0.91487 0.91455 0.98610 0.98595 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.85 71.98 0.64 -1.05 16 2 C -0.08 -0.99 2.25 -10.79 -0.02 -1.02 16 3 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.11 -1.36 5.20 30.60 0.16 -1.20 16 5 C -0.12 -1.51 5.92 30.60 0.18 -1.33 16 6 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 7 C -0.12 -2.50 4.94 30.59 0.15 -2.35 16 8 C -0.07 -1.19 1.36 -10.79 -0.01 -1.20 16 9 H 0.06 1.33 7.95 -2.39 -0.02 1.31 16 10 C -0.11 -1.97 5.07 29.85 0.15 -1.82 16 11 C 0.45 13.19 7.67 71.23 0.55 13.73 16 12 O -0.54 -19.10 13.72 21.94 0.30 -18.80 16 13 O -0.36 -11.93 10.22 -51.42 -0.53 -12.46 16 14 C 0.08 2.98 5.47 71.98 0.39 3.37 16 15 C -0.09 -3.95 5.53 30.60 0.17 -3.78 16 16 C 0.03 1.37 4.97 29.85 0.15 1.52 16 17 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 20 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 21 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 H 0.06 0.65 6.32 -2.39 -0.02 0.63 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.31 5.96 -2.39 -0.01 1.29 16 36 H 0.13 1.85 6.17 -2.39 -0.01 1.84 16 37 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.06 2.32 8.13 -2.39 -0.02 2.31 16 39 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 40 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -67.19 346.68 6.40 -60.79 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.93 Total: 8.81 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 3.38 Total: -27.46 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.22 Total: -31.25 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.19 6.40 -60.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920728036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.493 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds