Wall clock time and date at job start Mon Mar 30 2020 01:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99558 * 2 1 4 4 H 1.48499 * 109.47215 * 269.99909 * 3 2 1 5 5 H 1.48494 * 109.47314 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.46926 * 150.00199 * 3 2 1 7 7 C 1.37869 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00048 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00509 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.46866 * 300.00189 * 9 7 2 11 11 O 1.42896 * 109.46796 * 59.99861 * 9 7 2 12 12 C 1.53001 * 109.47312 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46887 * 180.66620 * 12 9 7 14 14 C 1.46847 * 111.00113 * 169.66705 * 13 12 9 15 15 C 1.53031 * 109.52543 * 185.83903 * 14 13 12 16 16 C 1.53120 * 109.27859 * 300.81733 * 15 14 13 17 17 C 1.53119 * 109.15946 * 57.65667 * 16 15 14 18 18 H 1.09001 * 109.53677 * 62.30230 * 17 16 15 19 19 N 1.46896 * 109.50476 * 182.40803 * 17 16 15 20 20 C 1.48537 * 111.00089 * 177.40755 * 19 17 16 21 21 C 1.54941 * 103.22586 * 159.71753 * 20 19 17 22 22 C 1.54597 * 102.92291 * 322.58261 * 21 20 19 23 23 C 1.47905 * 110.99690 * 294.79890 * 19 17 16 24 24 C 1.46846 * 110.99872 * 293.87484 * 13 12 9 25 25 H 0.97005 * 120.00525 * 359.97438 * 1 2 3 26 26 H 0.96701 * 114.00296 * 60.00424 * 11 9 7 27 27 H 1.09000 * 109.46666 * 300.66361 * 12 9 7 28 28 H 1.08994 * 109.47091 * 60.66485 * 12 9 7 29 29 H 1.09007 * 109.46134 * 305.85349 * 14 13 12 30 30 H 1.08999 * 109.46370 * 65.82097 * 14 13 12 31 31 H 1.09003 * 109.50437 * 180.87925 * 15 14 13 32 32 H 1.09000 * 109.50702 * 60.75826 * 15 14 13 33 33 H 1.08996 * 109.52567 * 297.75565 * 16 15 14 34 34 H 1.08996 * 109.52294 * 177.55904 * 16 15 14 35 35 H 1.09000 * 110.66783 * 278.15262 * 20 19 17 36 36 H 1.09001 * 110.66876 * 41.28363 * 20 19 17 37 37 H 1.09006 * 110.72175 * 204.22378 * 21 20 19 38 38 H 1.08993 * 110.72278 * 80.94690 * 21 20 19 39 39 H 1.08997 * 110.30798 * 263.04642 * 22 21 20 40 40 H 1.08994 * 110.30671 * 140.87414 * 22 21 20 41 41 H 1.09000 * 109.91994 * 333.51245 * 23 19 17 42 42 H 1.08998 * 109.91416 * 94.80616 * 23 19 17 43 43 H 1.09001 * 109.46230 * 294.17752 * 24 13 12 44 44 H 1.09000 * 109.46585 * 54.14897 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8745 -0.6807 -0.8905 11 8 3.9883 -0.5195 1.1661 12 6 4.0216 -2.6364 0.0001 13 7 5.4905 -2.6363 0.0156 14 6 6.0143 -3.9859 0.2621 15 6 7.5355 -3.9239 0.4162 16 6 8.1497 -3.3432 -0.8606 17 6 7.5518 -1.9579 -1.1209 18 1 7.8062 -1.2904 -0.2975 19 7 8.0929 -1.4179 -2.3752 20 6 7.4871 -0.0993 -2.6923 21 6 8.5029 0.5295 -3.6790 22 6 9.8656 0.0685 -3.1128 23 6 9.5480 -1.1768 -2.2644 24 6 6.0299 -2.0769 -1.2303 25 1 -0.4851 0.8400 0.0004 26 1 3.7033 -0.9224 1.9976 27 1 3.6489 -3.1534 0.8843 28 1 3.6677 -3.1470 -0.8955 29 1 5.5728 -4.3857 1.1751 30 1 5.7604 -4.6330 -0.5774 31 1 7.9256 -4.9279 0.5837 32 1 7.7899 -3.2879 1.2642 33 1 7.9285 -3.9994 -1.7023 34 1 9.2294 -3.2569 -0.7387 35 1 6.5156 -0.2271 -3.1698 36 1 7.3976 0.5094 -1.7925 37 1 8.4286 1.6169 -3.6681 38 1 8.3526 0.1416 -4.6865 39 1 10.3002 0.8500 -2.4896 40 1 10.5447 -0.1903 -3.9251 41 1 9.8161 -0.9953 -1.2236 42 1 10.0970 -2.0370 -2.6474 43 1 5.7759 -2.7329 -2.0629 44 1 5.5999 -1.0900 -1.4015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929282490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:51 Heat of formation + Delta-G solvation = -43.355651 kcal Electronic energy + Delta-G solvation = -21948.382865 eV Core-core repulsion = 18900.206327 eV Total energy + Delta-G solvation = -3048.176538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.72406 -37.84852 -35.87804 -33.19648 -32.20444 -31.81285 -29.13462 -28.35591 -28.20052 -25.30156 -23.16046 -22.71027 -20.80806 -20.72805 -19.98183 -19.49878 -17.37814 -16.15622 -16.04556 -15.06218 -14.88000 -14.68754 -14.56088 -14.22473 -13.88192 -13.59211 -13.35278 -13.20175 -12.77220 -12.63559 -12.55419 -12.23269 -11.68670 -11.50879 -11.41531 -11.25114 -11.16350 -10.95695 -10.91286 -10.68269 -10.63876 -10.42869 -10.32214 -10.11538 -9.74393 -8.97872 -8.59954 -8.39184 -8.21258 -7.73624 -6.11275 -4.22189 3.39743 3.49441 3.77280 3.83770 4.43211 4.55607 4.60840 4.62588 4.86648 4.98032 5.04560 5.15051 5.24439 5.27174 5.37794 5.46593 5.56300 5.62538 5.69518 5.70678 5.77461 5.81235 5.87899 5.90335 5.92304 5.93418 6.04195 6.05999 6.10136 6.16586 6.19948 6.30029 6.30704 6.48227 6.64748 6.90569 7.07077 7.32788 7.44032 7.64827 7.73200 8.31682 8.85795 9.14410 9.54120 10.99483 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.006129 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.765891 B = 4567.105476 C = 5736.429470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.215 1.215 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.202 3.798 10 H 0.050 0.950 11 O -0.571 6.571 12 C 0.042 3.958 13 N -0.530 5.530 14 C 0.054 3.946 15 C -0.114 4.114 16 C -0.108 4.108 17 C 0.081 3.919 18 H 0.051 0.949 19 N -0.515 5.515 20 C 0.031 3.969 21 C -0.123 4.123 22 C -0.131 4.131 23 C 0.038 3.962 24 C 0.065 3.935 25 H 0.264 0.736 26 H 0.354 0.646 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.274 -3.801 -3.414 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.120 4.120 3 Si 0.696 3.304 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.138 1.138 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.144 3.856 10 H 0.068 0.932 11 O -0.376 6.376 12 C -0.085 4.085 13 N -0.254 5.254 14 C -0.075 4.075 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.027 4.027 18 H 0.069 0.931 19 N -0.240 5.240 20 C -0.096 4.096 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.090 4.090 24 C -0.064 4.064 25 H 0.074 0.926 26 H 0.200 0.800 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.437 -3.418 -3.869 20.111 hybrid contribution -0.271 0.447 0.263 0.585 sum 19.166 -2.970 -3.606 19.727 Atomic orbital electron populations 1.69958 1.06783 1.27424 1.48978 1.24967 0.94577 0.99923 0.92523 0.87054 0.83224 0.81845 0.78325 1.21503 1.22282 1.13753 1.21528 0.89962 0.94788 1.54029 0.91105 1.19696 0.92970 0.86999 0.85898 0.93207 1.86649 1.77961 1.56886 1.16063 1.22808 0.84369 1.01057 1.00309 1.61875 1.08719 1.20424 1.34425 1.22081 0.94911 0.90234 1.00244 1.21556 0.95163 1.00479 0.98018 1.21581 0.99121 0.95944 0.97987 1.21816 0.94968 0.96010 0.89931 0.93070 1.64764 1.03234 1.23833 1.32165 1.23263 0.98736 0.89342 0.98274 1.22480 0.94163 1.00054 0.99460 1.22399 0.97858 0.97199 0.99453 1.22818 0.89799 0.97756 0.98632 1.22043 0.92917 1.00814 0.90607 0.92619 0.80029 0.91166 0.95051 0.91046 0.95511 0.91768 0.91275 0.91611 0.92400 0.89743 0.93285 0.91154 0.90837 0.91701 0.91243 0.93873 0.90668 0.94755 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.08 2.44 5.47 -17.82 -0.10 2.35 16 3 Si 0.87 21.99 26.99 -169.99 -4.59 17.40 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.22 -5.35 5.30 56.52 0.30 -5.05 16 7 C -0.57 -15.75 9.34 -34.44 -0.32 -16.07 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.20 4.75 2.18 -27.88 -0.06 4.69 16 10 H 0.05 1.22 5.90 -51.93 -0.31 0.92 16 11 O -0.57 -13.19 9.99 -35.23 -0.35 -13.54 16 12 C 0.04 0.84 4.57 -3.82 -0.02 0.82 16 13 N -0.53 -9.22 4.51 -234.67 -1.06 -10.28 16 14 C 0.05 0.77 5.46 -3.84 -0.02 0.75 16 15 C -0.11 -1.39 6.09 -26.65 -0.16 -1.55 16 16 C -0.11 -1.34 5.23 -26.61 -0.14 -1.48 16 17 C 0.08 1.16 1.81 -67.63 -0.12 1.04 16 18 H 0.05 0.81 7.96 -51.93 -0.41 0.39 16 19 N -0.52 -6.81 5.11 -222.39 -1.14 -7.95 16 20 C 0.03 0.41 5.31 -1.89 -0.01 0.40 16 21 C -0.12 -1.30 7.06 -24.87 -0.18 -1.47 16 22 C -0.13 -1.25 6.93 -25.37 -0.18 -1.42 16 23 C 0.04 0.42 5.60 -2.75 -0.02 0.40 16 24 C 0.06 1.08 4.35 -3.83 -0.02 1.07 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.35 7.38 9.04 45.56 0.41 7.79 16 27 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 28 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.07 0.99 8.01 -51.92 -0.42 0.57 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 35 H 0.08 1.18 7.68 -51.93 -0.40 0.78 16 36 H 0.05 0.69 8.02 -51.93 -0.42 0.28 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.04 0.47 7.65 -51.93 -0.40 0.08 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 1.49 5.03 -51.93 -0.26 1.22 16 LS Contribution 330.03 15.07 4.97 4.97 Total: -1.00 -30.62 330.03 -10.03 -40.65 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.30 Total: 5.88 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.34 Total: -10.48 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -1.42 Total: -44.89 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.35 Total: -13.54 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.59 Total: 17.40 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.62 -10.03 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929282490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.708 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds