Wall clock time and date at job start Mon Mar 30 2020 01:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99558 * 2 1 4 4 H 1.48499 * 109.47215 * 269.99909 * 3 2 1 5 5 H 1.48494 * 109.47314 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.46926 * 150.00199 * 3 2 1 7 7 C 1.37869 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00048 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00509 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.46866 * 300.00189 * 9 7 2 11 11 O 1.42896 * 109.46796 * 59.99861 * 9 7 2 12 12 C 1.53001 * 109.47312 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46887 * 180.66620 * 12 9 7 14 14 C 1.46847 * 111.00113 * 169.66705 * 13 12 9 15 15 C 1.53031 * 109.52543 * 185.83903 * 14 13 12 16 16 C 1.53120 * 109.27859 * 300.81733 * 15 14 13 17 17 C 1.53119 * 109.15946 * 57.65667 * 16 15 14 18 18 H 1.09001 * 109.53677 * 62.30230 * 17 16 15 19 19 N 1.46896 * 109.50476 * 182.40803 * 17 16 15 20 20 C 1.48537 * 111.00089 * 177.40755 * 19 17 16 21 21 C 1.54941 * 103.22586 * 159.71753 * 20 19 17 22 22 C 1.54597 * 102.92291 * 322.58261 * 21 20 19 23 23 C 1.47905 * 110.99690 * 294.79890 * 19 17 16 24 24 C 1.46846 * 110.99872 * 293.87484 * 13 12 9 25 25 H 0.97005 * 120.00525 * 359.97438 * 1 2 3 26 26 H 0.96701 * 114.00296 * 60.00424 * 11 9 7 27 27 H 1.09000 * 109.46666 * 300.66361 * 12 9 7 28 28 H 1.08994 * 109.47091 * 60.66485 * 12 9 7 29 29 H 1.09007 * 109.46134 * 305.85349 * 14 13 12 30 30 H 1.08999 * 109.46370 * 65.82097 * 14 13 12 31 31 H 1.09003 * 109.50437 * 180.87925 * 15 14 13 32 32 H 1.09000 * 109.50702 * 60.75826 * 15 14 13 33 33 H 1.08996 * 109.52567 * 297.75565 * 16 15 14 34 34 H 1.08996 * 109.52294 * 177.55904 * 16 15 14 35 35 H 1.09000 * 110.66783 * 278.15262 * 20 19 17 36 36 H 1.09001 * 110.66876 * 41.28363 * 20 19 17 37 37 H 1.09006 * 110.72175 * 204.22378 * 21 20 19 38 38 H 1.08993 * 110.72278 * 80.94690 * 21 20 19 39 39 H 1.08997 * 110.30798 * 263.04642 * 22 21 20 40 40 H 1.08994 * 110.30671 * 140.87414 * 22 21 20 41 41 H 1.09000 * 109.91994 * 333.51245 * 23 19 17 42 42 H 1.08998 * 109.91416 * 94.80616 * 23 19 17 43 43 H 1.09001 * 109.46230 * 294.17752 * 24 13 12 44 44 H 1.09000 * 109.46585 * 54.14897 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8745 -0.6807 -0.8905 11 8 3.9883 -0.5195 1.1661 12 6 4.0216 -2.6364 0.0001 13 7 5.4905 -2.6363 0.0156 14 6 6.0143 -3.9859 0.2621 15 6 7.5355 -3.9239 0.4162 16 6 8.1497 -3.3432 -0.8606 17 6 7.5518 -1.9579 -1.1209 18 1 7.8062 -1.2904 -0.2975 19 7 8.0929 -1.4179 -2.3752 20 6 7.4871 -0.0993 -2.6923 21 6 8.5029 0.5295 -3.6790 22 6 9.8656 0.0685 -3.1128 23 6 9.5480 -1.1768 -2.2644 24 6 6.0299 -2.0769 -1.2303 25 1 -0.4851 0.8400 0.0004 26 1 3.7033 -0.9224 1.9976 27 1 3.6489 -3.1534 0.8843 28 1 3.6677 -3.1470 -0.8955 29 1 5.5728 -4.3857 1.1751 30 1 5.7604 -4.6330 -0.5774 31 1 7.9256 -4.9279 0.5837 32 1 7.7899 -3.2879 1.2642 33 1 7.9285 -3.9994 -1.7023 34 1 9.2294 -3.2569 -0.7387 35 1 6.5156 -0.2271 -3.1698 36 1 7.3976 0.5094 -1.7925 37 1 8.4286 1.6169 -3.6681 38 1 8.3526 0.1416 -4.6865 39 1 10.3002 0.8500 -2.4896 40 1 10.5447 -0.1903 -3.9251 41 1 9.8161 -0.9953 -1.2236 42 1 10.0970 -2.0370 -2.6474 43 1 5.7759 -2.7329 -2.0629 44 1 5.5999 -1.0900 -1.4015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929282490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:51 Heat of formation + Delta-G solvation = -66.858148 kcal Electronic energy + Delta-G solvation = -21949.402010 eV Core-core repulsion = 18900.206327 eV Total energy + Delta-G solvation = -3049.195683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.84939 -39.09562 -37.55712 -34.51106 -34.38067 -32.88248 -30.48005 -29.78374 -29.26777 -27.02197 -24.52870 -23.89443 -22.09776 -21.83361 -21.28927 -20.63621 -19.41540 -17.36187 -17.05921 -16.82334 -16.46155 -16.17780 -16.10715 -15.46128 -15.07304 -14.99126 -14.87282 -14.51734 -14.26368 -13.88517 -13.64937 -13.50106 -13.22948 -12.95371 -12.77298 -12.64733 -12.47763 -12.32053 -12.21180 -11.96169 -11.83597 -11.73291 -11.46226 -11.38409 -11.25209 -10.96023 -10.81446 -10.12839 -9.42273 -9.18052 -8.37537 -6.51896 1.36394 1.41944 1.72903 2.41902 2.70995 3.00926 3.22088 3.64497 3.72854 3.91146 3.96823 4.03019 4.08938 4.13629 4.22007 4.33754 4.34612 4.40998 4.52198 4.58817 4.61341 4.67765 4.77456 4.81557 4.87376 4.92904 4.96523 4.97006 5.00923 5.04850 5.08268 5.15625 5.19680 5.32628 5.42358 5.43705 5.47122 5.89084 6.03404 6.07611 6.14566 6.31538 6.60551 7.21209 7.36557 8.76760 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.006129 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.765891 B = 4567.105476 C = 5736.429470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.032 3.968 3 Si 0.935 3.065 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.037 0.963 9 C 0.212 3.788 10 H 0.042 0.958 11 O -0.572 6.572 12 C 0.055 3.945 13 N -0.534 5.534 14 C 0.050 3.950 15 C -0.106 4.106 16 C -0.102 4.102 17 C 0.089 3.911 18 H 0.036 0.964 19 N -0.523 5.523 20 C 0.026 3.974 21 C -0.119 4.119 22 C -0.126 4.126 23 C 0.036 3.964 24 C 0.068 3.932 25 H 0.267 0.733 26 H 0.366 0.634 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.026 0.974 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.344 -3.901 -3.383 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.168 4.168 3 Si 0.759 3.241 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.129 1.129 7 C -0.605 4.605 8 H 0.056 0.944 9 C 0.154 3.846 10 H 0.059 0.941 11 O -0.379 6.379 12 C -0.074 4.074 13 N -0.259 5.259 14 C -0.078 4.078 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.020 4.020 18 H 0.054 0.946 19 N -0.248 5.248 20 C -0.102 4.102 21 C -0.157 4.157 22 C -0.164 4.164 23 C -0.092 4.092 24 C -0.060 4.060 25 H 0.076 0.924 26 H 0.213 0.787 27 H 0.092 0.908 28 H 0.039 0.961 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.044 0.956 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 22.528 -3.535 -3.833 23.124 hybrid contribution -1.266 0.402 0.253 1.352 sum 21.263 -3.134 -3.580 21.789 Atomic orbital electron populations 1.70074 1.08406 1.28404 1.50884 1.25793 0.95216 1.03426 0.92361 0.86039 0.82037 0.77662 0.78340 1.21253 1.22161 1.12872 1.21846 0.92356 0.93385 1.52938 0.94445 1.19439 0.90155 0.89215 0.85796 0.94077 1.86584 1.77650 1.57173 1.16446 1.22485 0.86501 0.98378 0.99998 1.61847 1.06739 1.22656 1.34667 1.22225 0.96707 0.88315 1.00542 1.21542 0.93096 1.02104 0.97721 1.21555 1.00169 0.94297 0.97985 1.21703 0.93080 0.97186 0.90001 0.94568 1.64784 1.04769 1.23794 1.31404 1.23256 0.98998 0.89624 0.98290 1.22474 0.93925 1.00514 0.98809 1.22406 0.97398 0.96723 0.99858 1.22921 0.88101 0.99043 0.99123 1.21985 0.94874 0.99100 0.90061 0.92398 0.78713 0.90818 0.96108 0.90337 0.95432 0.88892 0.91553 0.91761 0.90374 0.91477 0.94795 0.90183 0.90516 0.90834 0.89480 0.93838 0.89397 0.95588 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.86 13.96 21.44 0.30 -58.56 16 2 C 0.03 1.87 5.47 84.65 0.46 2.33 16 3 Si 0.93 46.03 26.99 68.60 1.85 47.88 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.21 -9.81 5.30 99.48 0.53 -9.29 16 7 C -0.57 -32.33 9.34 25.60 0.24 -32.09 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C 0.21 10.03 2.18 29.85 0.07 10.09 16 10 H 0.04 2.04 5.90 -2.39 -0.01 2.03 16 11 O -0.57 -25.94 9.99 -148.98 -1.49 -27.43 16 12 C 0.05 2.19 4.57 86.30 0.39 2.58 16 13 N -0.53 -18.23 4.51 -896.36 -4.04 -22.27 16 14 C 0.05 1.34 5.46 86.32 0.47 1.81 16 15 C -0.11 -2.28 6.09 30.64 0.19 -2.09 16 16 C -0.10 -2.25 5.23 30.67 0.16 -2.09 16 17 C 0.09 2.45 1.81 44.97 0.08 2.53 16 18 H 0.04 1.11 7.96 -2.39 -0.02 1.09 16 19 N -0.52 -13.15 5.11 -857.51 -4.38 -17.54 16 20 C 0.03 0.68 5.31 86.65 0.46 1.14 16 21 C -0.12 -2.30 7.06 31.80 0.22 -2.08 16 22 C -0.13 -2.04 6.93 31.47 0.22 -1.83 16 23 C 0.04 0.69 5.60 86.45 0.48 1.17 16 24 C 0.07 2.29 4.35 86.33 0.38 2.66 16 25 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 26 H 0.37 14.83 9.04 -74.06 -0.67 14.16 16 27 H 0.07 2.88 7.98 -2.39 -0.02 2.86 16 28 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 29 H 0.08 2.01 8.01 -2.38 -0.02 1.99 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.44 7.44 -2.39 -0.02 1.42 16 35 H 0.07 1.93 7.68 -2.39 -0.02 1.91 16 36 H 0.03 0.97 8.02 -2.39 -0.02 0.95 16 37 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.04 0.84 7.65 -2.39 -0.02 0.83 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 2.07 5.03 -2.39 -0.01 2.06 16 Total: -1.00 -66.21 330.03 -3.83 -70.04 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.11 Total: 23.72 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 3.82 Total: -15.85 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -8.12 Total: -98.37 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.49 Total: -27.43 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.85 Total: 47.88 kcal Total: -66.21 -3.83 -70.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929282490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.179 kcal (2) G-P(sol) polarization free energy of solvation -66.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds