Wall clock time and date at job start Mon Mar 30 2020 01:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.49572 * 111.15853 * 2 1 4 4 C 1.50815 * 102.39671 * 146.81726 * 3 2 1 5 5 C 1.53006 * 110.17273 * 69.54310 * 4 3 2 6 6 C 1.50339 * 126.14308 * 205.85765 * 4 3 2 7 7 N 1.49847 * 104.54744 * 143.97776 * 6 4 3 8 8 C 1.46897 * 110.98088 * 114.24645 * 7 6 4 9 9 C 1.53002 * 109.47049 * 70.55113 * 8 7 6 10 10 H 1.08995 * 109.47281 * 60.00332 * 9 8 7 11 11 O 1.42905 * 109.47031 * 300.00047 * 9 8 7 12 12 C 1.50704 * 109.47121 * 180.02562 * 9 8 7 13 13 H 1.08001 * 119.99734 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99958 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99982 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99726 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47210 * 59.99655 * 16 14 12 18 18 H 1.48506 * 109.46801 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47165 * 299.99218 * 16 14 12 20 20 C 1.50277 * 107.47252 * 352.70654 * 7 6 4 21 21 C 1.51049 * 101.86248 * 333.70352 * 20 7 6 22 22 C 1.53002 * 110.25741 * 291.99203 * 21 20 7 23 23 C 1.49662 * 111.00083 * 119.84071 * 2 1 3 24 24 H 1.08991 * 109.47324 * 300.15579 * 1 2 3 25 25 H 1.08997 * 109.47223 * 60.16014 * 1 2 3 26 26 H 1.09001 * 109.46890 * 180.16091 * 1 2 3 27 27 H 1.08999 * 110.46896 * 28.69012 * 3 2 1 28 28 H 1.09005 * 111.01654 * 265.18812 * 3 2 1 29 29 H 1.09001 * 109.47002 * 312.42337 * 5 4 3 30 30 H 1.08993 * 109.46955 * 72.42774 * 5 4 3 31 31 H 1.09000 * 109.47050 * 192.42603 * 5 4 3 32 32 H 1.08994 * 110.42340 * 262.78227 * 6 4 3 33 33 H 1.09003 * 110.41694 * 25.25271 * 6 4 3 34 34 H 1.08997 * 109.47486 * 190.54804 * 8 7 6 35 35 H 1.09007 * 109.47211 * 310.55701 * 8 7 6 36 36 H 0.96696 * 113.99773 * 299.99667 * 11 9 8 37 37 H 0.97002 * 119.99308 * 180.02562 * 15 14 12 38 38 H 1.09003 * 110.94812 * 215.56271 * 20 7 6 39 39 H 1.08994 * 110.97911 * 91.85778 * 20 7 6 40 40 H 1.08996 * 109.47620 * 167.04551 * 22 21 20 41 41 H 1.09003 * 109.47258 * 287.04316 * 22 21 20 42 42 H 1.08996 * 109.47764 * 47.03994 * 22 21 20 43 43 H 1.09002 * 110.38050 * 127.09460 * 23 2 1 44 44 H 1.09006 * 110.38030 * 4.73659 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0089 1.3949 0.0000 4 6 3.2755 1.2519 0.8062 5 6 4.3126 0.4462 0.0210 6 6 3.9519 2.3383 1.5950 7 7 4.4951 1.6420 2.8056 8 6 5.9639 1.6621 2.8091 9 6 6.4538 3.0862 3.0793 10 1 6.0836 3.4200 4.0485 11 8 5.9680 3.9590 2.0574 12 6 7.9607 3.1069 3.0823 13 1 8.5136 2.1955 2.9093 14 6 8.6335 4.2893 3.3070 15 7 7.9601 5.3991 3.5182 16 14 10.5013 4.3148 3.3115 17 1 11.0057 3.8604 1.9908 18 1 10.9768 5.6970 3.5736 19 1 11.0062 3.4075 4.3732 20 6 3.9758 0.2320 2.7860 21 6 2.6962 0.3832 1.9979 22 6 1.6739 1.1932 2.7978 23 6 2.0054 -0.6952 1.2120 24 1 -0.3633 0.5162 0.8885 25 1 -0.3633 0.5113 -0.8914 26 1 -0.3633 -1.0277 0.0029 27 1 1.3111 2.0737 0.4902 28 1 2.2296 1.7287 -1.0139 29 1 3.8444 -0.4503 -0.3855 30 1 4.7030 1.0542 -0.7950 31 1 5.1290 0.1608 0.6843 32 1 4.7615 2.7814 1.0152 33 1 3.2305 3.1013 1.8875 34 1 6.3346 0.9965 3.5886 35 1 6.3343 1.3283 1.8398 36 1 6.2588 3.7214 1.1663 37 1 8.4335 6.2309 3.6759 38 1 3.7717 -0.1222 3.7965 39 1 4.6719 -0.4332 2.2751 40 1 0.8544 1.4911 2.1439 41 1 1.2847 0.5832 3.6131 42 1 2.1542 2.0821 3.2066 43 1 2.7168 -1.4686 0.9222 44 1 1.1907 -1.1264 1.7939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931313827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:31 Heat of formation + Delta-G solvation = 0.155122 kcal Electronic energy + Delta-G solvation = -22527.522371 eV Core-core repulsion = 19481.232602 eV Total energy + Delta-G solvation = -3046.289770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59263 -37.13084 -35.19976 -32.17356 -31.96185 -31.58725 -28.69239 -28.17620 -26.57316 -26.24570 -25.23336 -23.27783 -21.60796 -20.17095 -19.85512 -18.25026 -16.87375 -15.72617 -15.52080 -15.37255 -15.09275 -14.59806 -14.25973 -14.15161 -13.79533 -13.21538 -13.16482 -12.65743 -12.37120 -12.17122 -12.10154 -12.05473 -11.79589 -11.73075 -11.63422 -11.47181 -11.06740 -11.03994 -10.88210 -10.81546 -10.67372 -10.38824 -10.12397 -10.01877 -9.52881 -8.95460 -8.55287 -8.42795 -8.00049 -7.66293 -5.98463 -4.16895 3.29643 3.35145 3.36691 3.86971 3.95573 4.32472 4.49732 4.76432 5.13574 5.15924 5.21747 5.25971 5.26795 5.28240 5.38235 5.48238 5.60852 5.70144 5.73375 5.77428 5.85702 5.89245 5.96588 5.97764 6.06333 6.09064 6.18518 6.23304 6.36597 6.39213 6.45093 6.50184 6.63652 6.66755 6.74695 6.93263 6.96324 7.41305 7.58000 7.78221 7.96995 8.23166 8.86522 9.39297 9.60027 11.05478 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042697 B = 0.004568 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.632671 B = 6128.290201 C = 6140.262921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.528 5.528 3 C 0.064 3.936 4 C -0.110 4.110 5 C -0.140 4.140 6 C 0.072 3.928 7 N -0.511 5.511 8 C 0.023 3.977 9 C 0.238 3.762 10 H 0.062 0.938 11 O -0.557 6.557 12 C -0.574 4.574 13 H 0.053 0.947 14 C 0.081 3.919 15 N -0.858 5.858 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.060 3.940 21 C -0.112 4.112 22 C -0.138 4.138 23 C 0.065 3.935 24 H 0.028 0.972 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.338 0.662 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.890 -10.579 -5.884 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.251 5.251 3 C -0.063 4.063 4 C -0.112 4.112 5 C -0.197 4.197 6 C -0.056 4.056 7 N -0.235 5.235 8 C -0.105 4.105 9 C 0.180 3.820 10 H 0.079 0.921 11 O -0.360 6.360 12 C -0.612 4.612 13 H 0.071 0.929 14 C -0.125 4.125 15 N -0.493 5.493 16 Si 0.715 3.285 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.068 4.068 21 C -0.113 4.113 22 C -0.195 4.195 23 C -0.062 4.062 24 H 0.046 0.954 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.183 0.817 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.179 -10.085 -5.303 17.422 hybrid contribution 1.370 -0.328 -0.358 1.453 sum -11.809 -10.413 -5.661 16.731 Atomic orbital electron populations 1.22537 0.88377 1.01664 1.00574 1.64978 1.07487 1.14510 1.38172 1.22237 0.94789 0.89256 1.00021 1.22216 0.95296 0.98671 0.95024 1.21972 0.97961 1.00150 0.99604 1.22288 0.99226 0.94247 0.89821 1.65368 1.09688 1.10451 1.38004 1.23167 0.85558 1.02639 0.99127 1.19330 0.91596 0.82337 0.88725 0.92055 1.86658 1.74998 1.57649 1.16717 1.21611 0.92205 0.94693 1.52734 0.92875 1.25012 0.98016 0.95634 0.93871 1.70076 1.35147 0.98909 1.45186 0.86756 0.86028 0.77083 0.78589 1.20230 1.21210 1.20183 1.22429 0.93478 0.91829 0.99093 1.22043 0.95968 0.97286 0.96039 1.21945 0.97503 1.01140 0.98945 1.22068 0.98527 0.95934 0.89678 0.95383 0.91575 0.91645 0.92769 0.90191 0.91630 0.92650 0.92526 0.89906 0.91020 0.91687 0.95676 0.81749 0.92978 0.90878 0.93218 0.93497 0.93108 0.90145 0.90394 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.12 60.07 0.55 0.71 16 2 N -0.53 -6.03 4.98 -241.15 -1.20 -7.24 16 3 C 0.06 0.78 5.51 -3.43 -0.02 0.77 16 4 C -0.11 -1.50 1.12 -153.93 -0.17 -1.67 16 5 C -0.14 -1.89 7.86 37.16 0.29 -1.60 16 6 C 0.07 1.19 4.28 -3.50 -0.01 1.18 16 7 N -0.51 -9.09 4.65 -231.87 -1.08 -10.17 16 8 C 0.02 0.48 4.28 -3.82 -0.02 0.46 16 9 C 0.24 5.96 3.09 -27.88 -0.09 5.87 16 10 H 0.06 1.75 8.14 -51.93 -0.42 1.33 16 11 O -0.56 -13.83 10.28 -35.23 -0.36 -14.19 16 12 C -0.57 -15.64 8.76 -34.44 -0.30 -15.95 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 14 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 15 N -0.86 -25.33 12.84 55.43 0.71 -24.61 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.06 0.88 5.50 -2.91 -0.02 0.86 16 21 C -0.11 -1.44 1.14 -153.85 -0.17 -1.61 16 22 C -0.14 -1.78 7.88 37.16 0.29 -1.49 16 23 C 0.07 0.75 5.40 -3.64 -0.02 0.73 16 24 H 0.03 0.27 6.69 -51.93 -0.35 -0.08 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.66 6.12 -51.93 -0.32 0.34 16 28 H 0.08 0.96 8.13 -51.93 -0.42 0.53 16 29 H 0.06 0.85 6.16 -51.93 -0.32 0.53 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.83 4.55 -51.93 -0.24 0.60 16 32 H 0.08 1.50 4.76 -51.93 -0.25 1.25 16 33 H 0.07 1.26 7.16 -51.93 -0.37 0.89 16 34 H 0.06 1.33 8.09 -51.93 -0.42 0.91 16 35 H 0.03 0.50 6.81 -51.93 -0.35 0.15 16 36 H 0.34 7.58 7.89 45.56 0.36 7.94 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.73 6.02 -51.93 -0.31 0.41 16 40 H 0.05 0.56 4.60 -51.93 -0.24 0.33 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.22 6.05 -51.93 -0.31 0.90 16 43 H 0.08 0.90 7.22 -51.93 -0.37 0.52 16 44 H 0.06 0.62 7.50 -51.93 -0.39 0.23 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -28.94 315.61 -8.37 -37.31 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.38 Total: 7.62 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 0.22 Total: -9.58 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: -1.57 Total: -42.02 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.36 Total: -14.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.94 -8.37 -37.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931313827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.462 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds