Wall clock time and date at job start Mon Mar 30 2020 01:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.49572 * 111.15853 * 2 1 4 4 C 1.50815 * 102.39671 * 146.81726 * 3 2 1 5 5 C 1.53006 * 110.17273 * 69.54310 * 4 3 2 6 6 C 1.50339 * 126.14308 * 205.85765 * 4 3 2 7 7 N 1.49847 * 104.54744 * 143.97776 * 6 4 3 8 8 C 1.46897 * 110.98088 * 114.24645 * 7 6 4 9 9 C 1.53002 * 109.47049 * 70.55113 * 8 7 6 10 10 H 1.08995 * 109.47281 * 60.00332 * 9 8 7 11 11 O 1.42905 * 109.47031 * 300.00047 * 9 8 7 12 12 C 1.50704 * 109.47121 * 180.02562 * 9 8 7 13 13 H 1.08001 * 119.99734 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99958 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99982 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99726 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47210 * 59.99655 * 16 14 12 18 18 H 1.48506 * 109.46801 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47165 * 299.99218 * 16 14 12 20 20 C 1.50277 * 107.47252 * 352.70654 * 7 6 4 21 21 C 1.51049 * 101.86248 * 333.70352 * 20 7 6 22 22 C 1.53002 * 110.25741 * 291.99203 * 21 20 7 23 23 C 1.49662 * 111.00083 * 119.84071 * 2 1 3 24 24 H 1.08991 * 109.47324 * 300.15579 * 1 2 3 25 25 H 1.08997 * 109.47223 * 60.16014 * 1 2 3 26 26 H 1.09001 * 109.46890 * 180.16091 * 1 2 3 27 27 H 1.08999 * 110.46896 * 28.69012 * 3 2 1 28 28 H 1.09005 * 111.01654 * 265.18812 * 3 2 1 29 29 H 1.09001 * 109.47002 * 312.42337 * 5 4 3 30 30 H 1.08993 * 109.46955 * 72.42774 * 5 4 3 31 31 H 1.09000 * 109.47050 * 192.42603 * 5 4 3 32 32 H 1.08994 * 110.42340 * 262.78227 * 6 4 3 33 33 H 1.09003 * 110.41694 * 25.25271 * 6 4 3 34 34 H 1.08997 * 109.47486 * 190.54804 * 8 7 6 35 35 H 1.09007 * 109.47211 * 310.55701 * 8 7 6 36 36 H 0.96696 * 113.99773 * 299.99667 * 11 9 8 37 37 H 0.97002 * 119.99308 * 180.02562 * 15 14 12 38 38 H 1.09003 * 110.94812 * 215.56271 * 20 7 6 39 39 H 1.08994 * 110.97911 * 91.85778 * 20 7 6 40 40 H 1.08996 * 109.47620 * 167.04551 * 22 21 20 41 41 H 1.09003 * 109.47258 * 287.04316 * 22 21 20 42 42 H 1.08996 * 109.47764 * 47.03994 * 22 21 20 43 43 H 1.09002 * 110.38050 * 127.09460 * 23 2 1 44 44 H 1.09006 * 110.38030 * 4.73659 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0089 1.3949 0.0000 4 6 3.2755 1.2519 0.8062 5 6 4.3126 0.4462 0.0210 6 6 3.9519 2.3383 1.5950 7 7 4.4951 1.6420 2.8056 8 6 5.9639 1.6621 2.8091 9 6 6.4538 3.0862 3.0793 10 1 6.0836 3.4200 4.0485 11 8 5.9680 3.9590 2.0574 12 6 7.9607 3.1069 3.0823 13 1 8.5136 2.1955 2.9093 14 6 8.6335 4.2893 3.3070 15 7 7.9601 5.3991 3.5182 16 14 10.5013 4.3148 3.3115 17 1 11.0057 3.8604 1.9908 18 1 10.9768 5.6970 3.5736 19 1 11.0062 3.4075 4.3732 20 6 3.9758 0.2320 2.7860 21 6 2.6962 0.3832 1.9979 22 6 1.6739 1.1932 2.7978 23 6 2.0054 -0.6952 1.2120 24 1 -0.3633 0.5162 0.8885 25 1 -0.3633 0.5113 -0.8914 26 1 -0.3633 -1.0277 0.0029 27 1 1.3111 2.0737 0.4902 28 1 2.2296 1.7287 -1.0139 29 1 3.8444 -0.4503 -0.3855 30 1 4.7030 1.0542 -0.7950 31 1 5.1290 0.1608 0.6843 32 1 4.7615 2.7814 1.0152 33 1 3.2305 3.1013 1.8875 34 1 6.3346 0.9965 3.5886 35 1 6.3343 1.3283 1.8398 36 1 6.2588 3.7214 1.1663 37 1 8.4335 6.2309 3.6759 38 1 3.7717 -0.1222 3.7965 39 1 4.6719 -0.4332 2.2751 40 1 0.8544 1.4911 2.1439 41 1 1.2847 0.5832 3.6131 42 1 2.1542 2.0821 3.2066 43 1 2.7168 -1.4686 0.9222 44 1 1.1907 -1.1264 1.7939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931313827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:31 Heat of formation + Delta-G solvation = -21.953429 kcal Electronic energy + Delta-G solvation = -22528.481070 eV Core-core repulsion = 19481.232602 eV Total energy + Delta-G solvation = -3047.248468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.71275 -38.63295 -36.77349 -34.26180 -33.28664 -32.71370 -30.25120 -29.40117 -27.69193 -27.38156 -26.82896 -24.66065 -22.94014 -21.82411 -20.96181 -19.37125 -18.94250 -16.87416 -16.68910 -16.61885 -16.49305 -16.32546 -16.01948 -15.63834 -15.04509 -14.57170 -14.46776 -13.98375 -13.64843 -13.38248 -13.31784 -13.16940 -13.09225 -13.05891 -12.85114 -12.75944 -12.70601 -12.65301 -12.40985 -12.21152 -12.06889 -11.77965 -11.69027 -11.25262 -11.00066 -10.69283 -10.64956 -9.94795 -9.33505 -9.06180 -8.11847 -6.38027 1.40937 1.42450 1.50563 2.38973 2.86777 2.96317 3.08649 3.14142 3.71653 4.07850 4.14624 4.17777 4.20368 4.22265 4.32150 4.46584 4.46792 4.53793 4.59911 4.62037 4.72467 4.75081 4.77123 4.87216 4.90084 4.95320 4.98916 5.06211 5.07352 5.10814 5.22705 5.26689 5.33593 5.40313 5.51068 5.63432 5.73349 5.82443 6.00710 6.09901 6.11224 6.28005 6.75302 7.34244 7.54905 8.92157 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042697 B = 0.004568 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.632671 B = 6128.290201 C = 6140.262921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.531 5.531 3 C 0.069 3.931 4 C -0.108 4.108 5 C -0.132 4.132 6 C 0.077 3.923 7 N -0.527 5.527 8 C 0.045 3.955 9 C 0.241 3.759 10 H 0.017 0.983 11 O -0.567 6.567 12 C -0.588 4.588 13 H 0.058 0.942 14 C 0.028 3.972 15 N -0.899 5.899 16 Si 0.959 3.041 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.269 1.269 20 C 0.061 3.939 21 C -0.102 4.102 22 C -0.133 4.133 23 C 0.070 3.930 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.349 0.651 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.381 -12.390 -6.845 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.255 5.255 3 C -0.059 4.059 4 C -0.110 4.110 5 C -0.189 4.189 6 C -0.050 4.050 7 N -0.251 5.251 8 C -0.084 4.084 9 C 0.183 3.817 10 H 0.035 0.965 11 O -0.371 6.371 12 C -0.626 4.626 13 H 0.076 0.924 14 C -0.175 4.175 15 N -0.535 5.535 16 Si 0.783 3.217 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.066 4.066 21 C -0.104 4.104 22 C -0.190 4.190 23 C -0.057 4.057 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.194 0.806 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.680 -11.919 -6.273 19.198 hybrid contribution 1.450 0.253 -0.046 1.472 sum -12.230 -11.666 -6.319 18.045 Atomic orbital electron populations 1.22610 0.86914 1.02706 1.00992 1.64988 1.08872 1.13607 1.38008 1.22193 0.93836 0.90012 0.99842 1.22087 0.95936 0.97431 0.95570 1.21886 0.97425 1.00418 0.99142 1.22077 0.98444 0.94824 0.89668 1.65259 1.07915 1.12869 1.39088 1.22721 0.87382 0.99176 0.99126 1.19098 0.90828 0.84738 0.87060 0.96503 1.86599 1.74995 1.58220 1.17324 1.22011 0.93509 0.94916 1.52186 0.92384 1.25873 1.03031 0.95198 0.93374 1.70222 1.37188 0.99550 1.46588 0.85634 0.79909 0.77109 0.79031 1.19197 1.21073 1.19395 1.22441 0.94443 0.89839 0.99894 1.21994 0.95194 0.97869 0.95328 1.21878 0.97535 1.00144 0.99439 1.22074 0.98925 0.95253 0.89465 0.95298 0.90852 0.90297 0.92809 0.89853 0.90539 0.92809 0.93866 0.91672 0.92542 0.91872 0.95194 0.80604 0.93055 0.90422 0.92675 0.92469 0.91952 0.92925 0.90075 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.12 127.69 1.16 1.42 16 2 N -0.53 -10.60 4.98 -916.86 -4.57 -15.17 16 3 C 0.07 1.55 5.51 85.07 0.47 2.02 16 4 C -0.11 -2.83 1.12 -51.80 -0.06 -2.89 16 5 C -0.13 -3.37 7.86 71.98 0.57 -2.81 16 6 C 0.08 2.60 4.28 84.87 0.36 2.97 16 7 N -0.53 -18.96 4.65 -887.50 -4.13 -23.09 16 8 C 0.04 1.85 4.28 86.30 0.37 2.21 16 9 C 0.24 12.46 3.09 29.85 0.09 12.55 16 10 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 11 O -0.57 -29.12 10.28 -148.98 -1.53 -30.65 16 12 C -0.59 -32.46 8.76 25.60 0.22 -32.24 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.03 1.56 5.40 84.65 0.46 2.02 16 15 N -0.90 -54.26 12.84 21.45 0.28 -53.98 16 16 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.06 1.74 5.50 85.00 0.47 2.20 16 21 C -0.10 -2.46 1.14 -51.75 -0.06 -2.51 16 22 C -0.13 -3.24 7.88 71.98 0.57 -2.67 16 23 C 0.07 1.40 5.40 84.88 0.46 1.85 16 24 H 0.03 0.46 6.69 -2.39 -0.02 0.44 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.22 6.12 -2.39 -0.01 1.20 16 28 H 0.08 1.83 8.13 -2.38 -0.02 1.81 16 29 H 0.08 1.80 6.16 -2.39 -0.01 1.78 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.21 4.55 -2.39 -0.01 1.20 16 32 H 0.07 2.41 4.76 -2.39 -0.01 2.40 16 33 H 0.06 2.05 7.16 -2.39 -0.02 2.03 16 34 H 0.06 2.59 8.09 -2.39 -0.02 2.58 16 35 H 0.03 1.20 6.81 -2.38 -0.02 1.18 16 36 H 0.35 16.06 7.89 -74.06 -0.58 15.48 16 37 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 1.53 6.02 -2.39 -0.01 1.51 16 40 H 0.06 1.27 4.60 -2.39 -0.01 1.26 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.59 6.05 -2.39 -0.01 1.57 16 43 H 0.08 1.60 7.22 -2.39 -0.02 1.59 16 44 H 0.07 1.29 7.50 -2.38 -0.02 1.27 16 Total: -1.00 -62.47 315.61 -2.43 -64.90 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.41 Total: 28.32 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 5.08 Total: -15.88 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -8.42 Total: -92.24 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.53 Total: -30.65 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -62.47 -2.43 -64.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931313827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.950 kcal (2) G-P(sol) polarization free energy of solvation -62.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds