Wall clock time and date at job start Mon Mar 30 2020 01:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48515 * 110.99916 * 2 1 4 4 C 1.54292 * 104.70891 * 159.28600 * 3 2 1 5 5 C 1.52998 * 112.37375 * 213.49309 * 4 3 2 6 6 C 1.54279 * 108.82346 * 87.77481 * 4 3 2 7 7 N 1.48523 * 104.71937 * 272.16985 * 6 4 3 8 8 C 1.46905 * 111.00023 * 200.73564 * 7 6 4 9 9 C 1.53000 * 109.47123 * 285.40389 * 8 7 6 10 10 H 1.09002 * 109.47398 * 59.99875 * 9 8 7 11 11 O 1.42903 * 109.46726 * 299.99631 * 9 8 7 12 12 C 1.50699 * 109.47083 * 179.97438 * 9 8 7 13 13 H 1.08000 * 119.99792 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99730 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 9 17 17 H 1.48501 * 109.46854 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46995 * 209.99565 * 16 14 12 19 19 H 1.48503 * 109.46814 * 329.99605 * 16 14 12 20 20 C 1.48506 * 104.20848 * 320.28311 * 7 6 4 21 21 C 1.54296 * 104.70888 * 39.73539 * 20 7 6 22 22 C 1.52997 * 112.37878 * 212.89474 * 21 20 7 23 23 C 1.48511 * 111.00004 * 115.40373 * 2 1 3 24 24 H 1.08999 * 109.47042 * 304.59410 * 1 2 3 25 25 H 1.08997 * 109.47402 * 64.59824 * 1 2 3 26 26 H 1.09007 * 109.47177 * 184.59906 * 1 2 3 27 27 H 1.09003 * 110.38915 * 278.09141 * 3 2 1 28 28 H 1.08997 * 110.39060 * 40.35995 * 3 2 1 29 29 H 1.09003 * 109.46839 * 178.09278 * 5 4 3 30 30 H 1.08997 * 109.47050 * 298.08825 * 5 4 3 31 31 H 1.08993 * 109.47317 * 58.09252 * 5 4 3 32 32 H 1.09000 * 110.38672 * 153.36594 * 6 4 3 33 33 H 1.08996 * 110.38923 * 30.98284 * 6 4 3 34 34 H 1.08992 * 109.47078 * 165.40076 * 8 7 6 35 35 H 1.09004 * 109.46829 * 45.39722 * 8 7 6 36 36 H 0.96700 * 114.00234 * 300.00043 * 11 9 8 37 37 H 0.96999 * 119.99784 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.39369 * 158.54408 * 20 7 6 39 39 H 1.09004 * 110.39249 * 280.93312 * 20 7 6 40 40 H 1.09003 * 109.47120 * 58.98774 * 22 21 20 41 41 H 1.08993 * 109.46893 * 178.98556 * 22 21 20 42 42 H 1.08998 * 109.47241 * 298.98715 * 22 21 20 43 43 H 1.08999 * 110.39024 * 81.92959 * 23 2 1 44 44 H 1.08991 * 110.39000 * 319.54396 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3865 0.0000 4 6 3.4448 1.2520 0.5279 5 6 3.8792 2.4661 1.3514 6 6 4.3853 0.9677 -0.6616 7 7 4.3753 -0.5105 -0.8056 8 6 5.5588 -0.9758 -1.5411 9 6 5.3942 -0.6542 -3.0279 10 1 5.2865 0.4228 -3.1569 11 8 4.2306 -1.3132 -3.5318 12 6 6.6085 -1.1309 -3.7824 13 1 7.4169 -1.6146 -3.2542 14 6 6.6874 -0.9497 -5.1469 15 7 7.7474 -1.3653 -5.8053 16 14 5.2894 -0.1125 -6.0603 17 1 5.5321 1.3519 -6.1017 18 1 5.2165 -0.6416 -7.4459 19 1 4.0084 -0.3824 -5.3593 20 6 4.3858 -1.0129 0.5919 21 6 3.4446 -0.0600 1.3579 22 6 3.8833 0.1505 2.8084 23 6 2.0012 -0.5948 1.2524 24 1 -0.3633 0.5835 0.8460 25 1 -0.3634 0.4408 -0.9283 26 1 -0.3634 -1.0244 0.0824 27 1 2.0031 1.7926 -1.0116 28 1 1.4105 2.0200 0.6616 29 1 4.8898 2.3070 1.7277 30 1 3.8615 3.3565 0.7230 31 1 3.1960 2.5995 2.1901 32 1 5.3928 1.3209 -0.4420 33 1 4.0054 1.4400 -1.5675 34 1 5.6665 -2.0527 -1.4121 35 1 6.4463 -0.4731 -1.1568 36 1 4.2574 -2.2763 -3.4495 37 1 7.8030 -1.2375 -6.7652 38 1 4.0065 -2.0340 0.6313 39 1 5.3933 -0.9649 1.0052 40 1 4.8920 0.5632 2.8268 41 1 3.1985 0.8427 3.2982 42 1 3.8719 -0.8046 3.3337 43 1 2.0034 -1.6827 1.1851 44 1 1.4116 -0.2676 2.1087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931313829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:37 Heat of formation + Delta-G solvation = -29.118971 kcal Electronic energy + Delta-G solvation = -22397.368855 eV Core-core repulsion = 19349.809665 eV Total energy + Delta-G solvation = -3047.559189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67284 -36.81328 -35.28685 -33.16560 -32.13094 -32.10839 -28.86509 -27.73213 -26.07721 -25.78011 -25.59489 -23.13532 -21.71403 -20.52185 -20.02047 -18.11954 -17.14234 -15.95774 -15.12432 -14.86637 -14.78943 -14.50186 -14.37778 -13.88170 -13.74525 -13.67495 -13.37125 -13.18552 -12.94579 -12.60150 -12.19187 -12.08605 -11.90036 -11.67127 -11.55615 -11.40368 -11.21381 -11.00523 -10.80852 -10.67877 -10.52385 -10.23046 -10.20873 -10.18808 -9.74969 -8.92212 -8.53364 -8.26459 -8.09464 -7.69354 -6.05609 -4.15974 3.45934 3.55265 3.85765 4.07741 4.37020 4.44119 4.60270 4.62774 4.82236 5.06956 5.19540 5.25204 5.30242 5.31526 5.39847 5.43399 5.52324 5.55542 5.64052 5.66339 5.68927 5.86554 5.88319 5.89586 5.95338 5.99177 6.00925 6.06804 6.12073 6.17722 6.21620 6.31009 6.41792 6.45364 6.72786 6.97142 7.16878 7.31061 7.52547 7.59733 7.82545 8.38157 8.91931 9.26130 9.60754 11.05203 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025217 B = 0.005717 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.100087 B = 4896.586060 C = 5256.244219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.489 5.489 3 C 0.052 3.948 4 C -0.067 4.067 5 C -0.130 4.130 6 C 0.053 3.947 7 N -0.478 5.478 8 C 0.029 3.971 9 C 0.207 3.793 10 H 0.048 0.952 11 O -0.566 6.566 12 C -0.564 4.564 13 H 0.069 0.931 14 C 0.083 3.917 15 N -0.897 5.897 16 Si 0.870 3.130 17 H -0.290 1.290 18 H -0.297 1.297 19 H -0.213 1.213 20 C 0.048 3.952 21 C -0.067 4.067 22 C -0.130 4.130 23 C 0.052 3.948 24 H 0.019 0.981 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.352 0.648 37 H 0.264 0.736 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.747 4.979 17.373 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.211 5.211 3 C -0.076 4.076 4 C -0.068 4.068 5 C -0.188 4.188 6 C -0.076 4.076 7 N -0.201 5.201 8 C -0.099 4.099 9 C 0.149 3.851 10 H 0.066 0.934 11 O -0.371 6.371 12 C -0.602 4.602 13 H 0.087 0.913 14 C -0.121 4.121 15 N -0.534 5.534 16 Si 0.697 3.303 17 H -0.217 1.217 18 H -0.224 1.224 19 H -0.135 1.135 20 C -0.080 4.080 21 C -0.068 4.068 22 C -0.188 4.188 23 C -0.076 4.076 24 H 0.037 0.963 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.198 0.802 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.171 5.061 16.279 20.946 hybrid contribution 0.290 0.552 0.632 0.888 sum -11.881 5.613 16.911 21.416 Atomic orbital electron populations 1.22507 0.88771 1.01571 1.00485 1.65322 1.06777 1.14868 1.34172 1.23113 0.93634 0.90054 1.00787 1.22016 0.95543 0.94209 0.95043 1.21696 1.01195 0.96737 0.99181 1.23081 0.96741 0.90759 0.96993 1.65425 1.39216 1.05025 1.10436 1.23014 0.89281 0.99912 0.97697 1.19583 0.84748 0.93460 0.87295 0.93393 1.86673 1.43813 1.22159 1.84436 1.21571 1.03904 1.41398 0.93342 0.91269 1.24979 0.95565 0.93875 0.97661 1.69972 1.28806 1.46086 1.08554 0.87039 0.86593 0.78537 0.78163 1.21650 1.22410 1.13507 1.23097 0.96651 0.98443 0.89853 1.22005 0.95398 0.94978 0.94427 1.21693 1.01257 1.01439 0.94371 1.23096 0.93715 1.00185 0.90588 0.96261 0.91353 0.91524 0.89992 0.94777 0.92185 0.92369 0.92579 0.94581 0.90145 0.91508 0.95165 0.80232 0.92714 0.90604 0.94858 0.92183 0.92562 0.92487 0.90216 0.94806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.53 60.07 0.57 0.75 16 2 N -0.49 -6.74 5.50 -238.43 -1.31 -8.05 16 3 C 0.05 0.68 5.49 -2.25 -0.01 0.66 16 4 C -0.07 -0.86 1.07 -151.97 -0.16 -1.02 16 5 C -0.13 -1.34 7.68 37.16 0.29 -1.06 16 6 C 0.05 0.85 4.94 -2.26 -0.01 0.84 16 7 N -0.48 -8.47 5.05 -230.17 -1.16 -9.63 16 8 C 0.03 0.59 4.43 -3.82 -0.02 0.58 16 9 C 0.21 5.00 2.37 -27.88 -0.07 4.93 16 10 H 0.05 1.21 6.89 -51.93 -0.36 0.85 16 11 O -0.57 -13.59 10.01 -35.23 -0.35 -13.94 16 12 C -0.56 -16.01 9.34 -34.44 -0.32 -16.33 16 13 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 14 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 15 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 16 Si 0.87 22.50 26.99 -169.99 -4.59 17.91 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 19 H -0.21 -5.45 5.31 56.52 0.30 -5.15 16 20 C 0.05 0.70 5.45 -2.26 -0.01 0.69 16 21 C -0.07 -0.82 1.07 -151.96 -0.16 -0.98 16 22 C -0.13 -1.25 7.65 37.16 0.28 -0.97 16 23 C 0.05 0.64 5.49 -2.26 -0.01 0.62 16 24 H 0.02 0.19 7.97 -51.93 -0.41 -0.22 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 28 H 0.03 0.39 7.74 -51.93 -0.40 -0.01 16 29 H 0.06 0.61 7.20 -51.93 -0.37 0.23 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.51 7.24 -51.93 -0.38 0.13 16 32 H 0.04 0.59 7.60 -51.93 -0.39 0.19 16 33 H 0.08 1.43 7.18 -51.93 -0.37 1.06 16 34 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 35 H 0.03 0.62 7.77 -51.93 -0.40 0.22 16 36 H 0.35 7.69 9.04 45.56 0.41 8.10 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.08 1.10 7.48 -51.93 -0.39 0.71 16 39 H 0.03 0.48 7.84 -51.93 -0.41 0.08 16 40 H 0.06 0.58 7.20 -51.93 -0.37 0.20 16 41 H 0.06 0.49 7.25 -51.93 -0.38 0.11 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.99 7.48 -51.93 -0.39 0.60 16 44 H 0.03 0.37 7.81 -51.93 -0.41 -0.04 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -31.86 329.14 -8.59 -40.46 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.18 Total: 4.36 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 0.27 Total: -8.93 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -1.70 Total: -44.82 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.35 Total: -13.94 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.59 Total: 17.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.86 -8.59 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931313829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.337 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds